FvH4_6g14161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
8693744 .. 8696544
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14161.t1

Sequence Viewer

Length: 495 bp
ATGGAGGTGGATGAGCGCATAGTTATTACTCCGAGTGGACGAGACAGGTGCTATGTATTTGTGGCAGACAGACCATGTGGATTGTCTCTGAATCAATATATGATGGTGTTCTCACAGTGGTGGTTTGATGATGATCATGGTGGCAAGGAATTGAAGGAAGGATATGAAGCGGACGTCCGCACTCGGCTTAAAGTGCGGACGTCCTGCGGACGTCCGTCCGTTCTCCACCCTCCGGCCCCGGCGACGGCGCGCCTCCACCCTAGAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCCTCGGCGAATCCATTCTTTTCCGGTTTGCCGGCGAGATCACCCAAAACTTCAAACAAAGTCGATCTCACCGGAAACTGGAAAAAAACGGATTCGCCGGGGAGAGAAAGTGGTCAGGGACGCTGCTGAAATCTTTTGGGGTGGGGGCGCGCCGTCGCCGGCACCGGAGGATGAAGAACGGACGGACGTCCGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.97

Weight (kDa)

10.99

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 4 cut(s) 177, 203, 214, 485
AccB1I GGYRCC 1 cut(s) 456
AccII CGCG 2 cut(s) 250, 445
AciI CCGC 5 cut(s) 170, 178, 196, 207, 486
AcyI GRCGYC 4 cut(s) 174, 200, 211, 482
AfiI CCNNNNNNNGG 3 cut(s) 232, 244, 373
AgsI TTSAA 2 cut(s) 154, 349
AleI CACNNNNGTG 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 36, 90
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 274, 418
AscI GGCGCGCC 2 cut(s) 248, 443
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 5 cut(s) 18, 250, 252, 445, 447
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 239, 394
AsuHPI GGTGA 2 cut(s) 328, 356
BanI GGYRCC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 286, 405
BccI CCATC 1 cut(s) 97
BceAI ACGGC 2 cut(s) 261, 432
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 239, 394
BcoDI GTCTC 2 cut(s) 36, 90
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 275, 419
BlsI GCNGC 2 cut(s) 276, 420
Bme1390I CCNGG 2 cut(s) 239, 394
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 237, 458
BmrFI CCNGG 2 cut(s) 239, 394
BoxI GACNNNNGTC 2 cut(s) 214, 481
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 254
BpuMI CCSGG 2 cut(s) 239, 394
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 4 cut(s) 174, 200, 211, 482
BsaJI CCNNGG 3 cut(s) 237, 298, 393
BsaWI WCCGGW 3 cut(s) 318, 366, 459
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 389, 419
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 244, 373
Bse118I RCCGGY 2 cut(s) 326, 453
Bse1I ACTGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 237, 298, 393
BseGI GGATG 2 cut(s) 16, 471
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 232, 244, 373
BseNI ACTGG 1 cut(s) 378
BsePI GCGCGC 2 cut(s) 248, 443
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 2 cut(s) 286, 405
Bsh1236I CGCG 2 cut(s) 250, 445
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 456
BsiSI CCGG 8 cut(s) 233, 239, 319, 327, 367, 393, 454, 460
BslFI GGGAC 2 cut(s) 264, 427
BslI CCNNNNNNNGG 3 cut(s) 232, 244, 373
BsmAI GTCTC 2 cut(s) 36, 90
BsmFI GGGAC 2 cut(s) 264, 427
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 133, 333, 359
BspACI CCGC 5 cut(s) 170, 178, 196, 207, 486
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 2 cut(s) 250, 445
BspLI GGNNCC 2 cut(s) 237, 458
BspT107I GGYRCC 1 cut(s) 456
BsrFI RCCGGY 2 cut(s) 326, 453
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 2 cut(s) 326, 453
BssECI CCNNGG 3 cut(s) 237, 298, 393
BssHII GCGCGC 2 cut(s) 248, 443
BssMI GATC 3 cut(s) 133, 333, 359
BssNI GRCGYC 4 cut(s) 174, 200, 211, 482
Bst4CI ACNGT 1 cut(s) 117
BstACI GRCGYC 4 cut(s) 174, 200, 211, 482
BstC8I GCNNGC 4 cut(s) 250, 328, 445, 455
BstF5I GGATG 2 cut(s) 16, 471
BstFNI CGCG 2 cut(s) 250, 445
BstHHI GCGC 5 cut(s) 18, 250, 252, 445, 447
BstKTI GATC 3 cut(s) 136, 336, 362
BstMAI GTCTC 2 cut(s) 36, 90
BstMBI GATC 3 cut(s) 133, 333, 359
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstPAI GACNNNNGTC 2 cut(s) 214, 481
BstSCI CCNGG 2 cut(s) 237, 392
BstUI CGCG 2 cut(s) 250, 445
BstV1I GCAGC 2 cut(s) 286, 405
BstV2I GAAGAC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 16, 471
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 4 cut(s) 250, 328, 445, 455
CfoI GCGC 5 cut(s) 18, 250, 252, 445, 447
Cfr10I RCCGGY 2 cut(s) 326, 453
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 2 cut(s) 266, 424
CviAII CATG 2 cut(s) 75, 137
CviJI RGCY 2 cut(s) 187, 236
CviKI_1 RGCY 2 cut(s) 187, 236
DpnI GATC 3 cut(s) 135, 335, 361
DpnII GATC 3 cut(s) 133, 333, 359
FaeI CATG 2 cut(s) 78, 140
FaiI YATR 7 cut(s) 20, 54, 76, 99, 101, 138, 165
FaqI GGGAC 2 cut(s) 264, 427
FatI CATG 2 cut(s) 74, 136
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 275, 419
FokI GGATG 2 cut(s) 23, 478
Fsp4HI GCNGC 2 cut(s) 275, 419
FspBI CTAG 1 cut(s) 261
GlaI GCGC 5 cut(s) 17, 249, 251, 444, 446
GluI GCNGC 2 cut(s) 275, 419
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 236
HapII CCGG 8 cut(s) 233, 239, 319, 327, 367, 393, 454, 460
HgaI GACGC 2 cut(s) 266, 424
HhaI GCGC 5 cut(s) 18, 250, 252, 445, 447
Hin1I GRCGYC 4 cut(s) 174, 200, 211, 482
Hin1II CATG 2 cut(s) 78, 140
Hin6I GCGC 5 cut(s) 16, 248, 250, 443, 445
HinP1I GCGC 5 cut(s) 16, 248, 250, 443, 445
HinfI GANTC 4 cut(s) 91, 267, 305, 387
HpaII CCGG 8 cut(s) 233, 239, 319, 327, 367, 393, 454, 460
HphI GGTGA 2 cut(s) 328, 356
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 33, 90
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 2 cut(s) 247, 453
HpyAV CCTTC 2 cut(s) 148, 152
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 4 cut(s) 174, 200, 211, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 4 cut(s) 174, 200, 211, 482
Hsp92I GRCGYC 4 cut(s) 174, 200, 211, 482
Hsp92II CATG 2 cut(s) 78, 140
HspAI GCGC 5 cut(s) 16, 248, 250, 443, 445
KroI GCCGGC 2 cut(s) 326, 453
KroNI GCCGGC 2 cut(s) 328, 455
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 333, 359
Lsp1109I GCAGC 2 cut(s) 286, 405
MaeI CTAG 1 cut(s) 261
MaeII ACGT 4 cut(s) 174, 200, 211, 482
MalI GATC 3 cut(s) 135, 335, 361
MboI GATC 3 cut(s) 133, 333, 359
MboII GAAGA 2 cut(s) 276, 481
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 5 cut(s) 240, 263, 305, 308, 456
MroNI GCCGGC 2 cut(s) 326, 453
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 2 cut(s) 189, 493
MslI CAYNNNNRTG 1 cut(s) 118
MspI CCGG 8 cut(s) 233, 239, 319, 327, 367, 393, 454, 460
MspR9I CCNGG 2 cut(s) 239, 394
MvnI CGCG 2 cut(s) 250, 445
MwoI GCNNNNNNNGC 1 cut(s) 193
NaeI GCCGGC 2 cut(s) 328, 455
NciI CCSGG 2 cut(s) 239, 394
NdeII GATC 3 cut(s) 133, 333, 359
NgoMIV GCCGGC 2 cut(s) 326, 453
NlaIII CATG 2 cut(s) 78, 140
NlaIV GGNNCC 2 cut(s) 237, 458
NmeAIII GCCGAG 2 cut(s) 163, 279
OliI CACNNNNGTG 1 cut(s) 118
PalAI GGCGCGCC 2 cut(s) 248, 443
PauI GCGCGC 2 cut(s) 248, 443
PdiI GCCGGC 2 cut(s) 328, 455
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 3 cut(s) 91, 305, 387
PkrI GCNGC 2 cut(s) 276, 420
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PshAI GACNNNNGTC 2 cut(s) 214, 481
PspN4I GGNNCC 2 cut(s) 237, 458
PspPI GGNCC 1 cut(s) 235
PteI GCGCGC 2 cut(s) 248, 443
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 189, 493
SatI GCNGC 2 cut(s) 275, 419
Sau3AI GATC 3 cut(s) 133, 333, 359
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 239, 394
SetI ASST 6 cut(s) 9, 50, 177, 203, 214, 485
SgsI GGCGCGCC 2 cut(s) 248, 443
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 1 cut(s) 149
SsiI CCGC 5 cut(s) 170, 178, 196, 207, 486
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 237, 392
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 4 cut(s) 177, 203, 214, 485
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 149
TfiI GAWTC 3 cut(s) 91, 305, 387
Tru1I TTAA 2 cut(s) 189, 493
Tru9I TTAA 2 cut(s) 189, 493
TscAI CASTG 1 cut(s) 122
TseI GCWGC 2 cut(s) 274, 418
TspDTI ATGAA 2 cut(s) 180, 482
TspGWI ACGGA 5 cut(s) 204, 208, 399, 489, 493
TspRI CASTG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 261
ZraI GACGTC 4 cut(s) 175, 201, 212, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.