Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

22332783 .. 22334446

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18462.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCTGTCAACCAAAGAGCAAGTTTACAAGCACAAGGCCATGGGGAACTGGGAGCTAGCTTGAGCCCCGGATCATGTAAAGATGGAGTAGCCTTGAATCCTGGCTCTCGTTCCAACAGTACAACTCACAATATCTACTGGGCAACTGTACAAGGCTTCACTGCCGTTTCAGATACGGACGTCCGCACCGGCCTTAAAGTGCGGACGTCCCTTCGTTCGCCATCGTACGGCGCCTCTACCCTAACAGACTCTAGCAGCGTCCCCGACCACTTTCCCTCCCCAGCGAGTCCGCCGAATTCCAGTTTTCCAGCTAGATCACCCAAAACTTCAAACAAAGTCAATTTGGCCGGAAAACTGGAATTCGGCGAACTCGCCGAGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTTCGTTGGGGTGGAGACGCGCCCTCGCCAGTGCCGTACGGTGGCGAAGGAGGGACGTCCGCACTTTAAGAGCCGTGCGGACGTCCGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

167

Amino Acids

17.67

Weight (kDa)

9.79

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	4 cut(s)	183, 209, 466, 492
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	1 cut(s)	427
AciI	CCGC	5 cut(s)	184, 202, 290, 467, 485
AclWI	GGATC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	295, 359
AcyI	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
AfaI	GTAC	5 cut(s)	121, 150, 227, 445, 496
AfiI	CCNNNNNNNGG	2 cut(s)	227, 448
AgsI	TTSAA	2 cut(s)	97, 330
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	4 cut(s)	56, 60, 311, 400
AluI	AGCT	4 cut(s)	56, 60, 311, 400
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	3 cut(s)	37, 190, 345
ApeKI	GCWGC	2 cut(s)	255, 400
ApoI	RAATTY	2 cut(s)	295, 359
AspLEI	GCGC	2 cut(s)	233, 429
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	309
AsuNHI	GCTAGC	1 cut(s)	56
BaeI	ACNNNNGTAYC	3 cut(s)	165, 198, 478
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	267, 387
BccI	CCATC	3 cut(s)	77, 229, 374
BceAI	ACGGC	4 cut(s)	149, 244, 426, 465
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	57, 252, 312
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	2 cut(s)	256, 401
BlsI	GCNGC	2 cut(s)	257, 402
Bme1390I	CCNGG	2 cut(s)	69, 102
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	69, 102
BmrI	ACTGGG	2 cut(s)	59, 148
BmtI	GCTAGC	1 cut(s)	60
BmuI	ACTGGG	2 cut(s)	59, 148
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	69
BsaHI	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
BsaJI	CCNNGG	3 cut(s)	40, 67, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 448
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	5 cut(s)	54, 143, 300, 360, 436
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	40, 67, 375
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	227, 448
BseNI	ACTGG	5 cut(s)	54, 143, 300, 360, 436
BseXI	GCAGC	2 cut(s)	267, 387
BseYI	CCCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	39, 192, 347
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	69, 189, 348
BsiWI	CGTACG	2 cut(s)	225, 443
BslFI	GGGAC	3 cut(s)	193, 245, 474
BslI	CCNNNNNNNGG	2 cut(s)	227, 448
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	3 cut(s)	193, 245, 474
BsnI	GGCC	3 cut(s)	39, 192, 347
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	71, 314
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	5 cut(s)	184, 202, 290, 467, 485
BspANI	GGCC	3 cut(s)	39, 192, 347
BspFNI	CGCG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	5 cut(s)	54, 143, 300, 360, 436
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	40, 67, 375
BssMI	GATC	2 cut(s)	71, 314
BssNI	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	119, 148, 448
BstACI	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
BstAUI	TGTACA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 429
BstKTI	GATC	2 cut(s)	74, 317
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	71, 314
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	67, 100
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	267, 387
BsuRI	GGCC	3 cut(s)	39, 192, 347
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 443
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	2 cut(s)	233, 429
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	2 cut(s)	247, 433
Csp6I	GTAC	5 cut(s)	120, 149, 226, 444, 495
CviAII	CATG	2 cut(s)	41, 75
CviQI	GTAC	5 cut(s)	120, 149, 226, 444, 495
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	2 cut(s)	73, 316
DpnII	GATC	2 cut(s)	71, 314
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	68
EcoRI	GAATTC	2 cut(s)	295, 359
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	44, 78
FaiI	YATR	2 cut(s)	42, 76
FaqI	GGGAC	3 cut(s)	193, 245, 474
FatI	CATG	2 cut(s)	40, 74
Fnu4HI	GCNGC	2 cut(s)	256, 401
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	256, 401
FspBI	CTAG	3 cut(s)	57, 252, 312
GlaI	GCGC	2 cut(s)	232, 428
GluI	GCNGC	2 cut(s)	256, 401
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	39, 192, 347
HapII	CCGG	3 cut(s)	69, 189, 348
HgaI	GACGC	2 cut(s)	247, 433
HhaI	GCGC	2 cut(s)	233, 429
Hin1I	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
Hin1II	CATG	2 cut(s)	44, 78
Hin6I	GCGC	2 cut(s)	231, 427
HinP1I	GCGC	2 cut(s)	231, 427
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	97, 248, 286
HpaII	CCGG	3 cut(s)	69, 189, 348
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	10, 26
Hpy188I	TCNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	10, 26
HpyAV	CCTTC	2 cut(s)	221, 448
HpyCH4III	ACNGT	3 cut(s)	119, 148, 448
HpyCH4IV	ACGT	4 cut(s)	180, 206, 463, 489
HpySE526I	ACGT	4 cut(s)	180, 206, 463, 489
Hsp92I	GRCGYC	5 cut(s)	180, 206, 231, 463, 489
Hsp92II	CATG	2 cut(s)	44, 78
HspAI	GCGC	2 cut(s)	231, 427
KasI	GGCGCC	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	71, 314
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	267, 387
MaeI	CTAG	3 cut(s)	57, 252, 312
MaeII	ACGT	4 cut(s)	180, 206, 463, 489
MalI	GATC	2 cut(s)	73, 316
MboI	GATC	2 cut(s)	71, 314
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	3 cut(s)	295, 340, 359
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	242, 295
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	244, 286, 370, 441, 451
MseI	TTAA	2 cut(s)	195, 474
MspI	CCGG	3 cut(s)	69, 189, 348
MspR9I	CCNGG	2 cut(s)	69, 102
MvaI	CCWGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	427
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	71, 314
NheI	GCTAGC	1 cut(s)	56
NlaIII	CATG	2 cut(s)	44, 78
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	400
PcsI	WCGNNNNNNNCGW	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	97
Pfl23II	CGTACG	2 cut(s)	225, 443
PkrI	GCNGC	2 cut(s)	257, 402
PleI	GAGTC	2 cut(s)	242, 294
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	2 cut(s)	242, 294
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	100
PspLI	CGTACG	2 cut(s)	225, 443
PspN4I	GGNNCC	1 cut(s)	232
RsaI	GTAC	5 cut(s)	121, 150, 227, 445, 496
RsaNI	GTAC	5 cut(s)	120, 149, 226, 444, 495
SaqAI	TTAA	2 cut(s)	195, 474
SatI	GCNGC	2 cut(s)	256, 401
Sau3AI	GATC	2 cut(s)	71, 314
SchI	GAGTC	2 cut(s)	242, 295
ScrFI	CCNGG	2 cut(s)	69, 102
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	9 cut(s)	58, 62, 183, 209, 313, 402, 466, 492, 500
SfoI	GGCGCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	295, 340, 359
SsiI	CCGC	5 cut(s)	184, 202, 290, 467, 485
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	57, 252, 312
StyD4I	CCNGG	2 cut(s)	67, 100
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	119, 148, 448
TaiI	ACGT	4 cut(s)	183, 209, 466, 492
TasI	AATT	3 cut(s)	295, 340, 359
TatI	WGTACW	2 cut(s)	119, 148
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	195, 474
Tru9I	TTAA	2 cut(s)	195, 474
TscAI	CASTG	2 cut(s)	166, 443
TseI	GCWGC	2 cut(s)	255, 400
TspGWI	ACGGA	2 cut(s)	191, 482
TspRI	CASTG	2 cut(s)	166, 443
XapI	RAATTY	2 cut(s)	295, 359
XspI	CTAG	3 cut(s)	57, 252, 312
ZraI	GACGTC	4 cut(s)	181, 207, 464, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.