FvH4_5g32251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
23271121 .. 23272437
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32251.t1

Sequence Viewer

Length: 312 bp
ATGGCTTCTCTCCTTCCCGGACGACAGTACAGGCTTCCAGGACGGCTTCTCTCCTTCCAGGATTGGCCAGCGACAAGTTTTCCGGCCAACCTTGATCAATCATGGTGTTTTCCGTCCAGAGCTTCAATCCGGCCGGAAAACTTGTCGCTGGTCAGTCCTAGAAGGAGAGAAACCGTCCTAGAAGCCTGTGCTGTCGTCCGGGAAGGAGAGAAGCCGCTTGGAATTGCAGACGAACCAAACCCTTGTCTTACTACTGAAACCTCGTCGCTTATACTCGGTTTGCGTTTTTATCTGACAAGATCGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

8.63

Isoelectric Point (pI)

68.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 3 cut(s) 65, 84, 131
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 1 cut(s) 126
AjnI CCWGG 2 cut(s) 37, 57
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AoxI GGCC 3 cut(s) 65, 84, 131
AsuC2I CCSGG 2 cut(s) 18, 200
BalI TGGCCA 1 cut(s) 67
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 39, 59
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 18, 200
BfaI CTAG 2 cut(s) 159, 179
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 4 cut(s) 18, 39, 59, 200
BmrFI CCNGG 4 cut(s) 18, 39, 59, 200
BpuMI CCSGG 2 cut(s) 18, 200
BseBI CCWGG 2 cut(s) 39, 59
BseX3I CGGCCG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 67, 86, 133
BsiEI CGRYCG 1 cut(s) 134
BsiSI CCGG 5 cut(s) 18, 83, 130, 134, 199
BsnI GGCC 3 cut(s) 67, 86, 133
Bsp143I GATC 2 cut(s) 94, 299
BspACI CCGC 1 cut(s) 215
BspANI GGCC 3 cut(s) 67, 86, 133
BssMI GATC 2 cut(s) 94, 299
Bst2UI CCWGG 2 cut(s) 39, 59
Bst4CI ACNGT 2 cut(s) 27, 175
BstC8I GCNNGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 97, 302
BstMBI GATC 2 cut(s) 94, 299
BstMCI CGRYCG 1 cut(s) 134
BstNI CCWGG 2 cut(s) 39, 59
BstSCI CCNGG 4 cut(s) 16, 37, 57, 198
BstZI CGGCCG 1 cut(s) 131
BsuRI GGCC 3 cut(s) 67, 86, 133
Cac8I GCNNGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 102
CviJI RGCY 9 cut(s) 5, 34, 46, 67, 86, 122, 133, 185, 214
CviKI_1 RGCY 9 cut(s) 5, 34, 46, 67, 86, 122, 133, 185, 214
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 96, 301
DpnII GATC 2 cut(s) 94, 299
EaeI YGGCCR 3 cut(s) 65, 84, 131
EagI CGGCCG 1 cut(s) 131
EclXI CGGCCG 1 cut(s) 131
Eco52I CGGCCG 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 37, 57
FaeI CATG 1 cut(s) 105
FaiI YATR 2 cut(s) 103, 272
FatI CATG 1 cut(s) 101
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 159, 179
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 3 cut(s) 67, 86, 133
HapII CCGG 5 cut(s) 18, 83, 130, 134, 199
Hin1II CATG 1 cut(s) 105
HpaII CCGG 5 cut(s) 18, 83, 130, 134, 199
Hpy188I TCNGA 2 cut(s) 294, 311
Hpy188III TCNNGA 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 4 cut(s) 23, 64, 156, 197
HpyCH4III ACNGT 2 cut(s) 27, 175
HpyCH4V TGCA 1 cut(s) 227
Hsp92II CATG 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 94, 299
MaeI CTAG 2 cut(s) 159, 179
MalI GATC 2 cut(s) 96, 301
MboI GATC 2 cut(s) 94, 299
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 67
MnlI CCTC 1 cut(s) 271
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 5 cut(s) 18, 83, 130, 134, 199
MspR9I CCNGG 4 cut(s) 18, 39, 59, 200
MvaI CCWGG 2 cut(s) 39, 59
NciI CCSGG 2 cut(s) 18, 200
NdeII GATC 2 cut(s) 94, 299
NlaIII CATG 1 cut(s) 105
PfoI TCCNGGA 4 cut(s) 16, 37, 57, 198
PkrI GCNGC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 37, 57
PspGI CCWGG 2 cut(s) 37, 57
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 2 cut(s) 94, 299
ScrFI CCNGG 4 cut(s) 18, 39, 59, 200
SetI ASST 3 cut(s) 93, 124, 263
Sse9I AATT 1 cut(s) 222
SsiI CCGC 1 cut(s) 215
SspMI CTAG 2 cut(s) 159, 179
StyD4I CCNGG 4 cut(s) 16, 37, 57, 198
TaaI ACNGT 2 cut(s) 27, 175
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 27
TauI GCSGC 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 102
XspI CTAG 2 cut(s) 159, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.