FvH4_6g25391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
19259941 .. 19260524
584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25391.t1

Sequence Viewer

Length: 450 bp
ATGGACTCGCCGGCGACAAATTTGCAACCAACCTTGATCGATCTTGAAGTTTTGAGTGAGGTTGTTGCCCAGACCTTCAATCCCGATCTCCTTAGCTTTCTTCTTCATGACTGGGATGCCTCTAGTGTTCATCCGGCAAACGCAGCTCCGTTGTCGACGCCTGATGCTGGAGAAATCAGCGACGTTCGCACTTTAAGGGCTTGCGCGCCTCCACCCCAAAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCACCGACGAGTCCGTTCTTTTCCAGTTTTCCGGCGAGATCAATCTTGTTTGAAGTTTTGGGTGATCTCGCCGGAAAACTGGAAAAGAACGGACTCGCCGGGGAGGGAAAGTGGTCGGGGACGTTGCTGGAGTTTTCTGGGGTGGAGGCGCGCCGTCGTCAACGCCGAAGGGTGGAGAACGGAGGGACGTGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

8.63

Isoelectric Point (pI)

76.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AccII CGCG 2 cut(s) 206, 402
AcsI RAATTY 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 167, 423
AgsI TTSAA 3 cut(s) 47, 79, 304
AjiI CACGTC 1 cut(s) 440
AluBI AGCT 2 cut(s) 96, 146
AluI AGCT 2 cut(s) 96, 146
Alw21I GWGCWC 1 cut(s) 445
Alw44I GTGCAC 1 cut(s) 441
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 143, 230
ApoI RAATTY 1 cut(s) 19
AscI GGCGCGCC 1 cut(s) 400
AspLEI GCGC 4 cut(s) 206, 208, 402, 404
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 245, 325
BaeGI GKGCMC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 155, 242
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BcnI CCSGG 1 cut(s) 351
BfaI CTAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 144, 231
BlsI GCNGC 2 cut(s) 145, 232
Bme1390I CCNGG 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 2 cut(s) 106, 154
BmuI ACTGGG 1 cut(s) 121
BpmI CTGGAG 3 cut(s) 189, 210, 400
Bpu10I CCTNAGC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 423
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 116, 275, 335
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 121, 130
BseLI CCNNNNNNNGG 2 cut(s) 167, 423
BseNI ACTGG 3 cut(s) 116, 275, 335
BsePI GCGCGC 2 cut(s) 204, 400
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 155, 242
Bsh1236I CGCG 2 cut(s) 206, 402
BshVI ATCGAT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 5 cut(s) 11, 134, 283, 323, 350
BslFI GGGAC 2 cut(s) 220, 384
BslI CCNNNNNNNGG 2 cut(s) 167, 423
BsmFI GGGAC 2 cut(s) 220, 384
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 5 cut(s) 36, 40, 85, 289, 315
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 2 cut(s) 206, 402
BspHI TCATGA 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 3 cut(s) 116, 275, 335
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 350
BssHII GCGCGC 2 cut(s) 204, 400
BssMI GATC 5 cut(s) 36, 40, 85, 289, 315
BssNI GRCGYC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 4 cut(s) 12, 202, 206, 402
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 121, 130
BstFNI CGCG 2 cut(s) 206, 402
BstHHI GCGC 4 cut(s) 206, 208, 402, 404
BstKTI GATC 5 cut(s) 39, 43, 88, 292, 318
BstMBI GATC 5 cut(s) 36, 40, 85, 289, 315
BstMWI GCNNNNNNNGC 2 cut(s) 143, 186
BstSCI CCNGG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 2 cut(s) 206, 402
BstV1I GCAGC 2 cut(s) 155, 242
Bsu15I ATCGAT 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 39
BtrI CACGTC 1 cut(s) 440
BtsCI GGATG 2 cut(s) 121, 130
Cac8I GCNNGC 4 cut(s) 12, 202, 206, 402
CciI TCATGA 1 cut(s) 106
CfoI GCGC 4 cut(s) 206, 208, 402, 404
Cfr10I RCCGGY 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 2 cut(s) 166, 222
CviAII CATG 1 cut(s) 107
CviJI RGCY 3 cut(s) 96, 146, 200
CviKI_1 RGCY 3 cut(s) 96, 146, 200
DdeI CTNAG 1 cut(s) 92
DpnI GATC 5 cut(s) 38, 42, 87, 291, 317
DpnII GATC 5 cut(s) 36, 40, 85, 289, 315
FaeI CATG 1 cut(s) 110
FaiI YATR 1 cut(s) 108
FaqI GGGAC 2 cut(s) 220, 384
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 144, 231
FokI GGATG 2 cut(s) 117, 128
Fsp4HI GCNGC 2 cut(s) 144, 231
FspBI CTAG 1 cut(s) 123
GlaI GCGC 4 cut(s) 205, 207, 401, 403
GluI GCNGC 2 cut(s) 144, 231
GsuI CTGGAG 3 cut(s) 189, 210, 400
HapII CCGG 5 cut(s) 11, 134, 283, 323, 350
HgaI GACGC 2 cut(s) 166, 222
HhaI GCGC 4 cut(s) 206, 208, 402, 404
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 4 cut(s) 204, 206, 400, 402
HinP1I GCGC 4 cut(s) 204, 206, 400, 402
HincII GTYRAC 2 cut(s) 156, 412
HindII GTYRAC 2 cut(s) 156, 412
HinfI GANTC 4 cut(s) 5, 223, 261, 344
HpaII CCGG 5 cut(s) 11, 134, 283, 323, 350
HphI GGTGA 2 cut(s) 245, 325
Hpy166II GTNNAC 3 cut(s) 156, 412, 443
Hpy188III TCNNGA 3 cut(s) 44, 83, 107
Hpy8I GTNNAC 3 cut(s) 156, 412, 443
Hpy99I CGWCG 4 cut(s) 160, 185, 261, 410
HpyAV CCTTC 2 cut(s) 85, 413
HpyCH4IV ACGT 3 cut(s) 183, 373, 439
HpyCH4V TGCA 2 cut(s) 25, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 186
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 3 cut(s) 183, 373, 439
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 4 cut(s) 204, 206, 400, 402
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 5 cut(s) 36, 40, 85, 289, 315
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 2 cut(s) 155, 242
LweI GCATC 2 cut(s) 106, 154
MaeI CTAG 1 cut(s) 123
MaeII ACGT 3 cut(s) 183, 373, 439
MalI GATC 5 cut(s) 38, 42, 87, 291, 317
MboI GATC 5 cut(s) 36, 40, 85, 289, 315
MboII GAAGA 2 cut(s) 92, 95
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 1 cut(s) 19
MlyI GAGTC 3 cut(s) 217, 270, 338
MnlI CCTC 7 cut(s) 52, 130, 219, 261, 348, 390, 427
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 2 cut(s) 194, 448
MspI CCGG 5 cut(s) 11, 134, 283, 323, 350
MspR9I CCNGG 1 cut(s) 351
MvnI CGCG 2 cut(s) 206, 402
MwoI GCNNNNNNNGC 2 cut(s) 143, 186
NaeI GCCGGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 351
NdeII GATC 5 cut(s) 36, 40, 85, 289, 315
NgoMIV GCCGGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 110
PagI TCATGA 1 cut(s) 106
PalAI GGCGCGCC 1 cut(s) 400
PauI GCGCGC 2 cut(s) 204, 400
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 145, 232
PleI GAGTC 3 cut(s) 217, 269, 338
PpsI GAGTC 3 cut(s) 217, 269, 338
PteI GCGCGC 2 cut(s) 204, 400
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 194, 448
SatI GCNGC 2 cut(s) 144, 231
Sau3AI GATC 5 cut(s) 36, 40, 85, 289, 315
SchI GAGTC 3 cut(s) 217, 270, 338
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 445
SetI ASST 8 cut(s) 35, 63, 77, 98, 148, 186, 376, 442
SfaNI GCATC 2 cut(s) 106, 154
SgrAI CRCCGGYG 1 cut(s) 10
SgsI GGCGCGCC 1 cut(s) 400
Sse9I AATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 349
TaiI ACGT 3 cut(s) 186, 376, 442
TaqI TCGA 2 cut(s) 39, 155
TasI AATT 1 cut(s) 19
Tru1I TTAA 2 cut(s) 194, 448
Tru9I TTAA 2 cut(s) 194, 448
TseI GCWGC 2 cut(s) 143, 230
TspDTI ATGAA 2 cut(s) 95, 119
TspGWI ACGGA 4 cut(s) 138, 254, 356, 446
VneI GTGCAC 1 cut(s) 441
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.