FvH4_2g19611

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
16605799 .. 16608040
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19611.t1

Sequence Viewer

Length: 252 bp
ATGGGAGATATAGACTGTGTTACCCCCGTAACTCCATATAGATCTAACATGTATGACTCCACTGCCTCACCGCAGCAGCCGCACCATGTGCGCCCCACGACCGTGCTCTTCGGCGTTGACTGGGGCTGGGTCCCCGTTGACTACACCCTCCCCGTCACTGGTGACAAGAACTTTAAGGACGACTTCGATGTGCCGCCGACGACGACAAAGGGGGACGGAGCTAGAGTAGACGCTCGTGGAGGTCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

84

Amino Acids

9.11

Weight (kDa)

4.69

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 3 cut(s) 71, 80, 194
AdeI CACNNNGTG 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 48
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 73, 76
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 60, 173
AvaII GGWCC 1 cut(s) 130
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 85, 88
BfaI CTAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 41
BisI GCNGC 4 cut(s) 74, 77, 80, 194
BlsI GCNGC 4 cut(s) 75, 78, 81, 195
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 2 cut(s) 131, 132
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 125, 163
BseLI CCNNNNNNNGG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 125, 163
BseXI GCAGC 2 cut(s) 85, 88
BseYI CCCAGC 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 2 cut(s) 116, 227
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 116, 227
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 41
BspACI CCGC 3 cut(s) 71, 80, 194
BspLI GGNNCC 2 cut(s) 131, 132
BspQI GCTCTTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 125, 163
BssMI GATC 1 cut(s) 41
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 17, 103
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 88
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 79, 88
BstNSI RCATGY 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 85, 88
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 60, 156
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 239
CviAII CATG 2 cut(s) 49, 86
CviJI RGCY 3 cut(s) 79, 126, 221
CviKI_1 RGCY 3 cut(s) 79, 126, 221
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
DraIII CACNNNGTG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 130
FaeI CATG 2 cut(s) 52, 89
FaiI YATR 6 cut(s) 11, 37, 39, 50, 54, 87
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 116, 227
FatI CATG 2 cut(s) 48, 85
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 74, 77, 80, 194
Fsp4HI GCNGC 4 cut(s) 74, 77, 80, 194
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 74, 77, 80, 194
GsaI CCCAGC 1 cut(s) 130
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 52, 89
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 118, 139
HindII GTYRAC 2 cut(s) 118, 139
HinfI GANTC 1 cut(s) 56
HphI GGTGA 2 cut(s) 60, 173
Hpy166II GTNNAC 3 cut(s) 118, 139, 229
Hpy188I TCNGA 1 cut(s) 246
Hpy8I GTNNAC 3 cut(s) 118, 139, 229
Hpy99I CGWCG 2 cut(s) 202, 205
HpyCH4III ACNGT 2 cut(s) 17, 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 88
Hsp92II CATG 2 cut(s) 52, 89
HspAI GCGC 1 cut(s) 91
KflI GGGWCCC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 41
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 3 cut(s) 106, 112, 144
Lsp1109I GCAGC 2 cut(s) 85, 88
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 4 cut(s) 19, 28, 154, 161
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 247
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 3 cut(s) 76, 158, 233
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 79, 88
NdeII GATC 1 cut(s) 41
NlaIII CATG 2 cut(s) 52, 89
NlaIV GGNNCC 2 cut(s) 131, 132
NmuCI GTSAC 2 cut(s) 154, 161
NspI RCATGY 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 101
PciI ACATGT 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 113
PkrI GCNGC 4 cut(s) 75, 78, 81, 195
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 130
PscI ACATGT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 131, 132
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 4 cut(s) 74, 77, 80, 194
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 108
SetI ASST 2 cut(s) 223, 244
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 247
SsiI CCGC 3 cut(s) 71, 80, 194
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 17, 103
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 247
TauI GCSGC 2 cut(s) 82, 196
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 67, 163
TseFI GTSAC 2 cut(s) 154, 161
TseI GCWGC 2 cut(s) 73, 76
Tsp45I GTSAC 2 cut(s) 154, 161
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 67, 163
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.