FvH4_5g27998

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
19256356 .. 19259026
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27998.t1

Sequence Viewer

Length: 1611 bp
ATGAATGATGATAAGCCAATTGAACGTTATCAGGTGCGGACGTCCGCACCGTGCGGATGTCCCTCCTTTCGCCACCGGCGAGGGCACGCCTCCACCCTAGCGGACTCCAGCAGCTTCCCCGACCTATTTCCATCTCCGGCGAGTCCGTCGAATTTCAGTTTTCCTGCCAGATCACCTAAAACTTCAAACAAAGTCGATCTGGCCGGAAAACTGGAATTCGGCGGACTTGCCGGGGATGGAAAGAGGTCGGGGAAGCTGCTGGAGTCTGCTGGGGTGGAGGCGCGCCCTCGCCGTACGGAGGGAAATCCACACAGTAAGGCGGTGCGGACGTCCTGCGGACGTCCCTCTGTTCTTGGTGTGGAAAGGCGAGCTGCAAGAGCCGGTGATGAACCTATCACTCATTGGGAGGAGATGAAAGAAAGGCTGAAGGAGAAGTACGTTCCTTTGGCTTACAAAGAGCGCTTGCTGGACCAGTGGCAATCTCTTCGTCAAGGGAACATGACAGCTGCTGAGTATATTGATAAGTTTGAAGAATTTATGGTGAGATGCAACATAAATGAAGATCCTTCTGTGACACTCGCTCGTTTCAGAACCGGCCTTCGTCTAGAACTTCAGAGGGAGCTGATTCCTCATGAACTCATCGGGAACAGCCCATCTCCATTTGTCAATAGCTCCAGTACTGCCAATTCATTGGTGAAAGCTGATACGGGAAAGGGAGTACAATCCGGTGTTCGAGGAGGGGGATCTGTAAAGTGCTACAAGTGTCTAGGCCATGGTCACTATGCTGGCCAATGCCCAACCAAAGAGAAACCTCGTAGTCTGTTTGCAGCAAGCACAGGAAAAGAGGCTCGAGAGGAATTGGAGGAAGAAGTTTATATCCCTGAAATTCCTGCCGTTGATGATGACTTGGATGATGAACCTATGGCCCAAATTCAACCAAGAACGGCGGTGGTAAGGTGCACTTTGACTCAACCTGAAACGGCTGAGGATTGGAAGAGGACCAGCATCTTTCACACTTATGTGAAGTATGGAGACAGAAGTTATAAGGTCATCATTGACAATGGAAGCTGTGTCAATATTGTCTCCCCTCCAACCATCTCTAACCTGGGGTTGTCCCCTGCTGATCATCCTCAACCTTATCATGTGGCATGGATTGATAAGTGTTCTATTCCCGTAACACAACGGTGTCAGGTTCCTATTCAATTCTCATCATACAAGGATACTGTTTGGTGTGATGTGGTGCCAATGGACGTGGGACACATTCTTTTGGGCAGACCATGGTTGTATGATCTAGATGGAGGGCAGCAGGCAAAATCGCTTAACATCATCGTTCCAAGAGATGTGGTAGAAAACATTGTGGATGAGCAGGTGGTTTCAACAAAACAAGGAGGCTACCAGAAGTATTCAATTAAATGGAAAGAAAAACCCGACTCTGACAAGGAGGAGCTGCAGCACACCAATCCAGATATCTTGGAAAGATACTACAGTTTTATCTCGCCGGAGGCGAGCTCTTCTCAGCCGGGGAGAATTGATGAGGACATCATAGTCAAACCTTTCAAGGTTTATGAGCGAAACAAATGGAAGGAGAAAGCACCTAATCATTCAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

537

Amino Acids

60.05

Weight (kDa)

7.18

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 130 - 201 1.7e-13 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AarI CACCTGC 1 cut(s) 1357
AasI GACNNNNNNGTC 1 cut(s) 1544
AatII GACGTC 3 cut(s) 44, 332, 343
Acc36I ACCTGC 1 cut(s) 1357
AccB1I GGYRCC 1 cut(s) 1240
AccII CGCG 1 cut(s) 283
AciI CCGC 9 cut(s) 37, 45, 54, 101, 222, 320, 325, 336, 947
AclI AACGTT 1 cut(s) 25
AclWI GGATC 2 cut(s) 557, 751
AcoI YGGCCR 2 cut(s) 201, 787
AcsI RAATTY 5 cut(s) 151, 215, 533, 885, 930
AcuI CTGAAG 2 cut(s) 446, 596
AcyI GRCGYC 3 cut(s) 41, 329, 340
AfaI GTAC 4 cut(s) 295, 437, 679, 720
AfeI AGCGCT 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 9 cut(s) 23, 186, 530, 935, 1202, 1377, 1407, 1558, 1605
AjiI CACGTC 1 cut(s) 1252
AjnI CCWGG 1 cut(s) 1104
AleI CACNNNNGTG 2 cut(s) 1019, 1183
Alw21I GWGCWC 2 cut(s) 962, 1511
Alw26I GTCTC 2 cut(s) 1026, 1087
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 2 cut(s) 557, 751
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 849
Aor51HI AGCGCT 1 cut(s) 461
AoxI GGCC 5 cut(s) 201, 595, 769, 787, 924
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 8 cut(s) 111, 256, 371, 506, 827, 1303, 1447, 1450
ApoI RAATTY 5 cut(s) 151, 215, 533, 885, 930
AscI GGCGCGCC 1 cut(s) 281
AspLEI GCGC 3 cut(s) 283, 285, 462
AspS9I GGNCC 3 cut(s) 469, 925, 999
AsuC2I CCSGG 2 cut(s) 232, 1521
AsuHPI GGTGA 4 cut(s) 165, 395, 553, 706
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 2 cut(s) 469, 999
BaeGI GKGCMC 2 cut(s) 87, 962
BaeI ACNNNNGTAYC 2 cut(s) 1471, 1504
BalI TGGCCA 1 cut(s) 789
BanI GGYRCC 1 cut(s) 1240
BanII GRGCYC 1 cut(s) 1511
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
Bbv12I GWGCWC 2 cut(s) 962, 1511
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 8 cut(s) 123, 243, 358, 493, 839, 1315, 1434, 1462
BccI CCATC 5 cut(s) 139, 230, 661, 1103, 1289
BceAI ACGGC 4 cut(s) 276, 878, 960, 996
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 1106
BciVI GTATCC 1 cut(s) 1213
BclI TGATCA 1 cut(s) 1123
BcnI CCSGG 2 cut(s) 232, 1521
BcoDI GTCTC 2 cut(s) 1026, 1087
BfaI CTAG 4 cut(s) 98, 605, 767, 1292
BfmI CTRYAG 2 cut(s) 1448, 1483
BfoI RGCGCY 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 1357
BfuI GTATCC 1 cut(s) 1213
BisI GCNGC 8 cut(s) 112, 257, 372, 507, 828, 1304, 1448, 1451
BlsI GCNGC 8 cut(s) 113, 258, 373, 508, 829, 1305, 1449, 1452
BmcAI AGTACT 1 cut(s) 679
Bme1390I CCNGG 3 cut(s) 232, 1106, 1521
Bme18I GGWCC 2 cut(s) 469, 999
BmeT110I CYCGRG 1 cut(s) 849
BmgBI CACGTC 1 cut(s) 1252
BmgT120I GGNCC 3 cut(s) 469, 925, 999
BmiI GGNNCC 2 cut(s) 1194, 1242
BmrFI CCNGG 3 cut(s) 232, 1106, 1521
BmsI GCATC 2 cut(s) 536, 1014
BplI GAGNNNNNCTC 4 cut(s) 1493, 1525, 1498, 1530
BpmI CTGGAG 3 cut(s) 91, 281, 658
Bpu10I CCTNAGC 1 cut(s) 984
BpuMI CCSGG 2 cut(s) 232, 1521
BsaHI GRCGYC 3 cut(s) 41, 329, 340
BsaJI CCNNGG 5 cut(s) 231, 772, 1105, 1277, 1520
BsaWI WCCGGW 1 cut(s) 725
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 3 cut(s) 75, 380, 593
Bse1I ACTGG 3 cut(s) 216, 472, 675
BseBI CCWGG 1 cut(s) 1106
BseDI CCNNGG 5 cut(s) 231, 772, 1105, 1277, 1520
BseGI GGATG 5 cut(s) 62, 241, 916, 1126, 1366
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 3 cut(s) 501, 975, 1529
BseNI ACTGG 3 cut(s) 216, 472, 675
BsePI GCGCGC 1 cut(s) 281
BseRI GAGGAG 3 cut(s) 422, 750, 1457
BseSI GKGCMC 2 cut(s) 87, 962
BseXI GCAGC 8 cut(s) 123, 243, 358, 493, 839, 1315, 1434, 1462
BseYI CCCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 5 cut(s) 203, 597, 771, 789, 926
BshNI GGYRCC 1 cut(s) 1240
BsiHKAI GWGCWC 2 cut(s) 962, 1511
BsiHKCI CYCGRG 1 cut(s) 849
BsiSI CCGG 9 cut(s) 76, 137, 204, 231, 381, 594, 726, 1499, 1520
BsiWI CGTACG 1 cut(s) 293
BslFI GGGAC 4 cut(s) 45, 327, 1099, 1269
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 2 cut(s) 1026, 1087
BsmFI GGGAC 4 cut(s) 45, 327, 1099, 1269
BsnI GGCC 5 cut(s) 203, 597, 771, 789, 926
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 3 cut(s) 87, 962, 1511
Bsp143I GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
Bsp19I CCATGG 2 cut(s) 772, 1277
BspACI CCGC 9 cut(s) 37, 45, 54, 101, 222, 320, 325, 336, 947
BspANI GGCC 5 cut(s) 203, 597, 771, 789, 926
BspCNI CTCAG 3 cut(s) 502, 976, 1528
BspFNI CGCG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 1194, 1242
BspMAI CTGCAG 1 cut(s) 1452
BspMI ACCTGC 1 cut(s) 1357
BspPI GGATC 2 cut(s) 557, 751
BspQI GCTCTTC 1 cut(s) 1516
BspT107I GGYRCC 1 cut(s) 1240
BsrFI RCCGGY 3 cut(s) 75, 380, 593
BsrI ACTGG 3 cut(s) 216, 472, 675
BssAI RCCGGY 3 cut(s) 75, 380, 593
BssECI CCNNGG 5 cut(s) 231, 772, 1105, 1277, 1520
BssHII GCGCGC 1 cut(s) 281
BssMI GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
BssNI GRCGYC 3 cut(s) 41, 329, 340
BssT1I CCWWGG 2 cut(s) 772, 1277
Bst2UI CCWGG 1 cut(s) 1106
Bst4CI ACNGT 5 cut(s) 51, 314, 1185, 1225, 1487
Bst6I CTCTTC 3 cut(s) 489, 989, 1516
BstACI GRCGYC 3 cut(s) 41, 329, 340
BstC8I GCNNGC 8 cut(s) 87, 283, 369, 464, 787, 832, 1308, 1507
BstDEI CTNAG 3 cut(s) 510, 984, 1515
BstDSI CCRYGG 2 cut(s) 772, 1277
BstF5I GGATG 5 cut(s) 62, 241, 916, 1126, 1366
BstFNI CGCG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 3 cut(s) 283, 285, 462
BstKTI GATC 6 cut(s) 173, 199, 565, 746, 1126, 1291
BstMAI GTCTC 2 cut(s) 1026, 1087
BstMBI GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 1106
BstSCI CCNGG 3 cut(s) 230, 1104, 1519
BstSFI CTRYAG 2 cut(s) 1448, 1483
BstSLI GKGCMC 2 cut(s) 87, 962
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 8 cut(s) 123, 243, 358, 493, 839, 1315, 1434, 1462
BstX2I RGATCY 2 cut(s) 562, 743
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 562, 743
BsuI GTATCC 1 cut(s) 1213
BsuRI GGCC 5 cut(s) 203, 597, 771, 789, 926
BtgI CCRYGG 2 cut(s) 772, 1277
BtrI CACGTC 1 cut(s) 1252
BtsCI GGATG 5 cut(s) 62, 241, 916, 1126, 1366
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 1 cut(s) 1357
Cac8I GCNNGC 8 cut(s) 87, 283, 369, 464, 787, 832, 1308, 1507
CaiI CAGNNNCTG 1 cut(s) 509
CciI TCATGA 1 cut(s) 631
CfoI GCGC 3 cut(s) 283, 285, 462
Cfr10I RCCGGY 3 cut(s) 75, 380, 593
Cfr13I GGNCC 3 cut(s) 469, 925, 999
Csp6I GTAC 4 cut(s) 294, 436, 678, 719
CspCI CAANNNNNGTGG 4 cut(s) 1233, 1268, 1323, 1358
CviAII CATG 6 cut(s) 499, 632, 773, 1142, 1149, 1278
CviQI GTAC 4 cut(s) 294, 436, 678, 719
DdeI CTNAG 3 cut(s) 510, 984, 1515
DpnI GATC 6 cut(s) 172, 198, 564, 745, 1125, 1290
DpnII GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
DrdI GACNNNNNNGTC 1 cut(s) 1544
DseDI GACNNNNNNGTC 1 cut(s) 1544
EaeI YGGCCR 2 cut(s) 201, 787
Eam1104I CTCTTC 3 cut(s) 489, 989, 1516
EarI CTCTTC 3 cut(s) 489, 989, 1516
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 1509
Eco130I CCWWGG 2 cut(s) 772, 1277
Eco24I GRGCYC 1 cut(s) 1511
Eco32I GATATC 1 cut(s) 1468
Eco47I GGWCC 2 cut(s) 469, 999
Eco47III AGCGCT 1 cut(s) 461
Eco53kI GAGCTC 1 cut(s) 1509
Eco57I CTGAAG 2 cut(s) 446, 596
Eco88I CYCGRG 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 1509
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 1104
EcoRV GATATC 1 cut(s) 1468
EcoT14I CCWWGG 2 cut(s) 772, 1277
EcoT38I GRGCYC 1 cut(s) 1511
ErhI CCWWGG 2 cut(s) 772, 1277
FaeI CATG 6 cut(s) 502, 635, 776, 1145, 1152, 1281
FalI AAGNNNNNCTT 2 cut(s) 946, 978
FaqI GGGAC 4 cut(s) 45, 327, 1099, 1269
FatI CATG 6 cut(s) 498, 631, 772, 1141, 1148, 1277
FbaI TGATCA 1 cut(s) 1123
Fnu4HI GCNGC 8 cut(s) 112, 257, 372, 507, 828, 1304, 1448, 1451
FokI GGATG 5 cut(s) 69, 248, 923, 1113, 1373
FriOI GRGCYC 1 cut(s) 1511
Fsp4HI GCNGC 8 cut(s) 112, 257, 372, 507, 828, 1304, 1448, 1451
FspBI CTAG 4 cut(s) 98, 605, 767, 1292
GlaI GCGC 3 cut(s) 282, 284, 461
GluI GCNGC 8 cut(s) 112, 257, 372, 507, 828, 1304, 1448, 1451
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 3 cut(s) 91, 281, 658
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 5 cut(s) 203, 597, 771, 789, 926
HapII CCGG 9 cut(s) 76, 137, 204, 231, 381, 594, 726, 1499, 1520
HhaI GCGC 3 cut(s) 283, 285, 462
Hin1I GRCGYC 3 cut(s) 41, 329, 340
Hin1II CATG 6 cut(s) 502, 635, 776, 1145, 1152, 1281
Hin6I GCGC 3 cut(s) 281, 283, 460
HinP1I GCGC 3 cut(s) 281, 283, 460
HinfI GANTC 6 cut(s) 104, 142, 263, 625, 967, 1430
HpaII CCGG 9 cut(s) 76, 137, 204, 231, 381, 594, 726, 1499, 1520
HphI GGTGA 4 cut(s) 165, 395, 553, 706
Hpy166II GTNNAC 1 cut(s) 960
Hpy188I TCNGA 3 cut(s) 590, 615, 1435
Hpy188III TCNNGA 7 cut(s) 605, 632, 643, 851, 1292, 1463, 1605
Hpy8I GTNNAC 1 cut(s) 960
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 4 cut(s) 421, 576, 608, 1576
HpyCH4III ACNGT 5 cut(s) 51, 314, 1185, 1225, 1487
HpyCH4IV ACGT 6 cut(s) 25, 41, 329, 340, 438, 1251
HpyCH4V TGCA 5 cut(s) 374, 549, 827, 960, 1450
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 510, 984, 1515
HpySE526I ACGT 6 cut(s) 25, 41, 329, 340, 438, 1251
Hsp92I GRCGYC 3 cut(s) 41, 329, 340
Hsp92II CATG 6 cut(s) 502, 635, 776, 1145, 1152, 1281
HspAI GCGC 3 cut(s) 281, 283, 460
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
LguI GCTCTTC 1 cut(s) 1516
LmnI GCTCC 3 cut(s) 619, 677, 1444
Lsp1109I GCAGC 8 cut(s) 123, 243, 358, 493, 839, 1315, 1434, 1462
LweI GCATC 2 cut(s) 536, 1014
MaeI CTAG 4 cut(s) 98, 605, 767, 1292
MaeII ACGT 6 cut(s) 25, 41, 329, 340, 438, 1251
MaeIII GTNAC 3 cut(s) 571, 776, 1174
MalI GATC 6 cut(s) 172, 198, 564, 745, 1125, 1290
MboI GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
MboII GAAGA 6 cut(s) 476, 542, 572, 878, 1006, 1503
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 2 cut(s) 562, 743
MhlI GDGCHC 3 cut(s) 87, 962, 1511
MlsI TGGCCA 1 cut(s) 789
MluNI TGGCCA 1 cut(s) 789
MlyI GAGTC 5 cut(s) 98, 151, 272, 961, 1424
MmeI TCCRAC 1 cut(s) 1115
Mox20I TGGCCA 1 cut(s) 789
MscI TGGCCA 1 cut(s) 789
MseI TTAA 2 cut(s) 1320, 1410
MslI CAYNNNNRTG 3 cut(s) 1017, 1019, 1183
Msp20I TGGCCA 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 9 cut(s) 76, 137, 204, 231, 381, 594, 726, 1499, 1520
MspR9I CCNGG 3 cut(s) 232, 1106, 1521
MunI CAATTG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 1106
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 2 cut(s) 232, 1521
NcoI CCATGG 2 cut(s) 772, 1277
NdeII GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
NlaIII CATG 6 cut(s) 502, 635, 776, 1145, 1152, 1281
NlaIV GGNNCC 2 cut(s) 1194, 1242
NmuCI GTSAC 2 cut(s) 571, 776
OliI CACNNNNGTG 2 cut(s) 1019, 1183
PaeR7I CTCGAG 1 cut(s) 849
PagI TCATGA 1 cut(s) 631
PalAI GGCGCGCC 1 cut(s) 281
PaqCI CACCTGC 1 cut(s) 1357
PauI GCGCGC 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 1516
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 76, 1502
PfeI GAWTC 1 cut(s) 625
Pfl23II CGTACG 1 cut(s) 293
PkrI GCNGC 8 cut(s) 113, 258, 373, 508, 829, 1305, 1449, 1452
PleI GAGTC 5 cut(s) 98, 150, 271, 961, 1424
PpsI GAGTC 5 cut(s) 98, 150, 271, 961, 1424
PsiI TTATAA 1 cut(s) 1044
Psp124BI GAGCTC 1 cut(s) 1511
Psp1406I AACGTT 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 1104
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 1104
PspLI CGTACG 1 cut(s) 293
PspN4I GGNNCC 2 cut(s) 1194, 1242
PspPI GGNCC 3 cut(s) 469, 925, 999
PstI CTGCAG 1 cut(s) 1452
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 562, 743
PteI GCGCGC 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 4 cut(s) 295, 437, 679, 720
RsaNI GTAC 4 cut(s) 294, 436, 678, 719
RseI CAYNNNNRTG 3 cut(s) 1017, 1019, 1183
SacI GAGCTC 1 cut(s) 1511
SapI GCTCTTC 1 cut(s) 1516
SaqAI TTAA 2 cut(s) 1320, 1410
SatI GCNGC 8 cut(s) 112, 257, 372, 507, 828, 1304, 1448, 1451
Sau3AI GATC 6 cut(s) 170, 196, 562, 743, 1123, 1288
Sau96I GGNCC 3 cut(s) 469, 925, 999
ScaI AGTACT 1 cut(s) 679
SchI GAGTC 5 cut(s) 98, 151, 272, 961, 1424
ScrFI CCNGG 3 cut(s) 232, 1106, 1521
SduI GDGCHC 3 cut(s) 87, 962, 1511
SfaNI GCATC 2 cut(s) 536, 1014
SfcI CTRYAG 2 cut(s) 1448, 1483
Sfr274I CTCGAG 1 cut(s) 849
SgrAI CRCCGGYG 1 cut(s) 75
SgsI GGCGCGCC 1 cut(s) 281
SinI GGWCC 2 cut(s) 469, 999
SlaI CTCGAG 1 cut(s) 849
SmiMI CAYNNNNRTG 3 cut(s) 1017, 1019, 1183
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
SsiI CCGC 9 cut(s) 37, 45, 54, 101, 222, 320, 325, 336, 947
SspI AATATT 1 cut(s) 1078
SspMI CTAG 4 cut(s) 98, 605, 767, 1292
SstI GAGCTC 1 cut(s) 1511
StyD4I CCNGG 3 cut(s) 230, 1104, 1519
StyI CCWWGG 2 cut(s) 772, 1277
TaaI ACNGT 5 cut(s) 51, 314, 1185, 1225, 1487
TaiI ACGT 6 cut(s) 28, 44, 332, 343, 441, 1254
TaqI TCGA 4 cut(s) 149, 195, 733, 850
TatI WGTACW 2 cut(s) 677, 718
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 2 cut(s) 1320, 1410
Tru9I TTAA 2 cut(s) 1320, 1410
TscAI CASTG 1 cut(s) 479
TseFI GTSAC 2 cut(s) 571, 776
TseI GCWGC 8 cut(s) 111, 256, 371, 506, 827, 1303, 1447, 1450
Tsp45I GTSAC 2 cut(s) 571, 776
TspDTI ATGAA 7 cut(s) 17, 402, 428, 573, 648, 678, 930
TspGWI ACGGA 2 cut(s) 135, 311
TspRI CASTG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 958
VpaK11BI GGWCC 2 cut(s) 469, 999
XapI RAATTY 5 cut(s) 151, 215, 533, 885, 930
XbaI TCTAGA 2 cut(s) 604, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 1102
XhoI CTCGAG 1 cut(s) 849
XspI CTAG 4 cut(s) 98, 605, 767, 1292
ZraI GACGTC 3 cut(s) 42, 330, 341
ZrmI AGTACT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.