FvH4_2g15311

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
13490264 .. 13491156
893 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15311.t1

Sequence Viewer

Length: 432 bp
ATGGCTGAAAAAATGAGTCCAGTGCTTATCAATCATAGGACTTTTGAACCCGCCAACAGTACCGTCCTCAGTTCCCATCACTCATCCTTCATGGACCAAAACCCTAATGTCCACACCATCGTGGCTGTTGATGATATTGAAATCCCCACAGTTGATTGCTCTGTGCTACTCTCTGATGATCTTGAAGAAAGATCTAAGGCTATTAAAAACATCGGCCATGTCTGCGAGGACTTTGGCTTCTTCTATAATGACGAAGAAGGCCGGAGAGATCGCGATCGGAGGTCCATCATGATCGGTCGTGAAGTTCTGAGTGAGATTGCTGCACAGACCTCCGATCGCGATCTCTCCGGCCTTCTTCTTCATTCCAACACCGTCGGGGGAGGTCTGGGATCACGCCGGGGAGAAGAAACGACGTCGTCGGAGCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

144

Amino Acids

15.86

Weight (kDa)

4.82

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 416
AccII CGCG 2 cut(s) 273, 339
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 3 cut(s) 47, 140, 185
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
AlwI GGATC 1 cut(s) 397
AoxI GGCC 3 cut(s) 214, 259, 349
ApeKI GCWGC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 94, 282
AsuC2I CCSGG 1 cut(s) 398
AvaII GGWCC 2 cut(s) 94, 282
BbvI GCAGC 1 cut(s) 307
BccI CCATC 3 cut(s) 84, 125, 293
BcnI CCSGG 1 cut(s) 398
BglII AGATCT 1 cut(s) 191
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 2 cut(s) 94, 282
BmgT120I GGNCC 2 cut(s) 94, 282
BmrFI CCNGG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 2 cut(s) 273, 339
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 2 cut(s) 273, 339
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 83
BseJI GATNNNNATC 2 cut(s) 273, 339
BseMII CTCAG 2 cut(s) 82, 299
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 273, 339
Bsh1285I CGRYCG 3 cut(s) 277, 298, 337
BshFI GGCC 3 cut(s) 216, 261, 351
BsiEI CGRYCG 3 cut(s) 277, 298, 337
BsiSI CCGG 3 cut(s) 262, 348, 397
BsnI GGCC 3 cut(s) 216, 261, 351
Bsp143I GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
Bsp68I TCGCGA 2 cut(s) 273, 339
BspACI CCGC 1 cut(s) 51
BspANI GGCC 3 cut(s) 216, 261, 351
BspCNI CTCAG 2 cut(s) 81, 300
BspFNI CGCG 2 cut(s) 273, 339
BspHI TCATGA 1 cut(s) 288
BspPI GGATC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
BssNI GRCGYC 1 cut(s) 413
Bst4CI ACNGT 4 cut(s) 59, 64, 151, 373
BstACI GRCGYC 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 68, 195, 308
BstF5I GGATG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 273, 339
BstKTI GATC 8 cut(s) 181, 194, 271, 277, 294, 337, 343, 392
BstMBI GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
BstMCI CGRYCG 3 cut(s) 277, 298, 337
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 2 cut(s) 273, 339
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 3 cut(s) 216, 261, 351
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 27
BtuMI TCGCGA 2 cut(s) 273, 339
CciI TCATGA 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 94, 282
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 91, 218, 289
CviJI RGCY 8 cut(s) 5, 125, 200, 216, 237, 261, 351, 424
CviKI_1 RGCY 8 cut(s) 5, 125, 200, 216, 237, 261, 351, 424
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 68, 195, 308
DpnI GATC 8 cut(s) 180, 193, 270, 276, 293, 336, 342, 391
DpnII GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
EaeI YGGCCR 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 94, 282
FaeI CATG 3 cut(s) 94, 221, 292
FaiI YATR 5 cut(s) 36, 92, 219, 246, 290
FatI CATG 3 cut(s) 90, 217, 288
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 3 cut(s) 216, 261, 351
HapII CCGG 3 cut(s) 262, 348, 397
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 3 cut(s) 94, 221, 292
HinfI GANTC 1 cut(s) 16
HpaII CCGG 3 cut(s) 262, 348, 397
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 5 cut(s) 175, 279, 309, 334, 421
Hpy188III TCNNGA 5 cut(s) 182, 272, 289, 299, 338
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 4 cut(s) 377, 415, 418, 421
HpyAV CCTTC 3 cut(s) 97, 251, 362
HpyCH4III ACNGT 4 cut(s) 59, 64, 151, 373
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 3 cut(s) 68, 195, 308
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 3 cut(s) 94, 221, 292
Kzo9I GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 33, 275, 361, 371, 410, 410
Lsp1109I GCAGC 1 cut(s) 307
MaeII ACGT 1 cut(s) 413
MalI GATC 8 cut(s) 180, 193, 270, 276, 293, 336, 342, 391
MboI GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
MboII GAAGA 6 cut(s) 197, 232, 266, 347, 350, 416
MflI RGATCY 1 cut(s) 191
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 2 cut(s) 390, 399
MnlI CCTC 5 cut(s) 77, 220, 273, 340, 374
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 3 cut(s) 262, 348, 397
MspR9I CCNGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 273, 339
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 398
NdeII GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
NlaIII CATG 3 cut(s) 94, 221, 292
NruI TCGCGA 2 cut(s) 273, 339
OliI CACNNNNGTG 1 cut(s) 119
PagI TCATGA 1 cut(s) 288
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 1 cut(s) 322
Ple19I CGATCG 2 cut(s) 277, 337
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspPI GGNCC 2 cut(s) 94, 282
PsuI RGATCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 415
PvuI CGATCG 2 cut(s) 277, 337
RruI TCGCGA 2 cut(s) 273, 339
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 8 cut(s) 178, 191, 268, 274, 291, 334, 340, 389
Sau96I GGNCC 2 cut(s) 94, 282
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 398
SetI ASST 5 cut(s) 284, 332, 385, 416, 426
SinI GGWCC 2 cut(s) 94, 282
SmiMI CAYNNNNRTG 1 cut(s) 119
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 396
TaaI ACNGT 4 cut(s) 59, 64, 151, 373
TaiI ACGT 1 cut(s) 416
TaqII GACCGA 1 cut(s) 284
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 79, 350
TspRI CASTG 1 cut(s) 27
Tth111I GACNNNGTC 1 cut(s) 415
VpaK11BI GGWCC 2 cut(s) 94, 282
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.