FvH4_2g27712

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
21928103 .. 21930326
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27712.t1

Sequence Viewer

Length: 261 bp
ATGGGTCGGGGGATGCTCATTGCTGACGCAAGCCACGAGTTTGGGTCTAGGCTGAGATGGATCAAACTCACCTGGGTCACTCTTCTCCTCTCACCTGGGTTGAATATCTCCCCAACAAGCCACAAGCTTGGGTCTAGGCTGAGGTGGATCAAACTTGCCTTGAAGCAAAAGGACACCGGAAAGTCGAGACTCGAGTTCTCCGCCGAAGACGTCGCCGTCTACATTAATCTTACAGCTACCAAGACTTTGTCTCTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.67

Weight (kDa)

10.7

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AatII GACGTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 201
AclWI GGATC 2 cut(s) 68, 155
AcyI GRCGYC 1 cut(s) 210
AgsI TTSAA 2 cut(s) 103, 163
AjnI CCWGG 2 cut(s) 71, 94
AluBI AGCT 2 cut(s) 127, 236
AluI AGCT 2 cut(s) 127, 236
Alw26I GTCTC 2 cut(s) 181, 255
AlwI GGATC 2 cut(s) 68, 155
Ama87I CYCGRG 1 cut(s) 191
AseI ATTAAT 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 61, 84
AvaI CYCGRG 1 cut(s) 191
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 73, 96
BcoDI GTCTC 2 cut(s) 181, 255
BfaI CTAG 2 cut(s) 48, 135
Bme1390I CCNGG 2 cut(s) 73, 96
BmeT110I CYCGRG 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 73, 96
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 72, 95
BsaWI WCCGGW 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 73, 96
BseDI CCNNGG 2 cut(s) 72, 95
BseGI GGATG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 44, 131
BseRI GAGGAG 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 181, 255
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 2 cut(s) 60, 147
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 45, 132
BspPI GGATC 2 cut(s) 68, 155
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 72, 95
BssMI GATC 2 cut(s) 60, 147
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 73, 96
Bst6I CTCTTC 2 cut(s) 87, 258
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 53, 140
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 2 cut(s) 63, 150
BstMAI GTCTC 2 cut(s) 181, 255
BstMBI GATC 2 cut(s) 60, 147
BstNI CCWGG 2 cut(s) 73, 96
BstSCI CCNGG 2 cut(s) 71, 94
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 2 cut(s) 41, 128
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 31
CseI GACGC 1 cut(s) 35
CviJI RGCY 6 cut(s) 33, 52, 120, 127, 139, 236
CviKI_1 RGCY 6 cut(s) 33, 52, 120, 127, 139, 236
DdeI CTNAG 2 cut(s) 53, 140
DpnI GATC 2 cut(s) 62, 149
DpnII GATC 2 cut(s) 60, 147
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 87, 258
EarI CTCTTC 2 cut(s) 87, 258
EciI GGCGGA 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 71, 94
FblI GTMKAC 1 cut(s) 219
FokI GGATG 1 cut(s) 25
FspBI CTAG 2 cut(s) 48, 135
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 61, 84
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 53, 140
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 60, 147
LpnPI CCDG 5 cut(s) 58, 81, 85, 108, 190
LweI GCATC 1 cut(s) 3
MaeI CTAG 2 cut(s) 48, 135
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 62, 149
MboI GATC 2 cut(s) 60, 147
MboII GAAGA 3 cut(s) 74, 218, 245
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 2 cut(s) 98, 135
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 73, 96
MvaI CCWGG 2 cut(s) 73, 96
NdeII GATC 2 cut(s) 60, 147
NmuCI GTSAC 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 247
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 71, 94
PspGI CCWGG 2 cut(s) 71, 94
PspXI VCTCGAGB 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 2 cut(s) 60, 147
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 73, 96
SetI ASST 6 cut(s) 74, 97, 129, 146, 213, 238
SfaNI GCATC 1 cut(s) 3
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 48, 135
StyD4I CCNGG 2 cut(s) 71, 94
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 185, 192
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 48, 135
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.