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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 4 cut(s) | 383, 410, 628, 686 |
| AccB1I | GGYRCC | 1 cut(s) | 856 |
| AccI | GTMKAC | 1 cut(s) | 129 |
| AcoI | YGGCCR | 1 cut(s) | 953 |
| AcsI | RAATTY | 1 cut(s) | 970 |
| AcuI | CTGAAG | 1 cut(s) | 911 |
| AcvI | CACGTG | 1 cut(s) | 675 |
| AcyI | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| AfaI | GTAC | 1 cut(s) | 620 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 390, 620 |
| AflIII | ACRYGT | 1 cut(s) | 672 |
| AjnI | CCWGG | 3 cut(s) | 262, 475, 723 |
| AleI | CACNNNNGTG | 1 cut(s) | 673 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 810, 842 |
| AluBI | AGCT | 3 cut(s) | 443, 789, 821 |
| AluI | AGCT | 3 cut(s) | 443, 789, 821 |
| Alw21I | GWGCWC | 1 cut(s) | 732 |
| Alw26I | GTCTC | 7 cut(s) | 224, 241, 431, 572, 899, 920, 943 |
| Alw44I | GTGCAC | 1 cut(s) | 728 |
| AoxI | GGCC | 4 cut(s) | 200, 665, 721, 953 |
| ApaLI | GTGCAC | 1 cut(s) | 728 |
| ApeKI | GCWGC | 5 cut(s) | 762, 769, 786, 821, 935 |
| ApoI | RAATTY | 1 cut(s) | 970 |
| AspLEI | GCGC | 1 cut(s) | 750 |
| AspS9I | GGNCC | 2 cut(s) | 85, 321 |
| AsuC2I | CCSGG | 3 cut(s) | 16, 456, 741 |
| AvaII | GGWCC | 2 cut(s) | 85, 321 |
| BaeGI | GKGCMC | 2 cut(s) | 732, 861 |
| BanI | GGYRCC | 1 cut(s) | 856 |
| BanII | GRGCYC | 1 cut(s) | 280 |
| BbrPI | CACGTG | 1 cut(s) | 675 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| Bbv12I | GWGCWC | 1 cut(s) | 732 |
| BbvI | GCAGC | 5 cut(s) | 749, 756, 798, 808, 947 |
| BccI | CCATC | 5 cut(s) | 112, 259, 312, 342, 892 |
| BceAI | ACGGC | 7 cut(s) | 14, 200, 408, 508, 597, 888, 968 |
| BciT130I | CCWGG | 3 cut(s) | 264, 477, 725 |
| BcnI | CCSGG | 3 cut(s) | 16, 456, 741 |
| BcoDI | GTCTC | 7 cut(s) | 224, 241, 431, 572, 899, 920, 943 |
| BfaI | CTAG | 1 cut(s) | 255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 745 |
| BisI | GCNGC | 7 cut(s) | 690, 763, 770, 787, 822, 915, 936 |
| BlsI | GCNGC | 7 cut(s) | 691, 764, 771, 788, 823, 916, 937 |
| Bme1390I | CCNGG | 6 cut(s) | 16, 264, 456, 477, 725, 741 |
| Bme18I | GGWCC | 2 cut(s) | 85, 321 |
| BmgT120I | GGNCC | 2 cut(s) | 85, 321 |
| BmiI | GGNNCC | 2 cut(s) | 279, 858 |
| BmrFI | CCNGG | 6 cut(s) | 16, 264, 456, 477, 725, 741 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| Bpu10I | CCTNAGC | 1 cut(s) | 209 |
| BpuMI | CCSGG | 3 cut(s) | 16, 456, 741 |
| BsaAI | YACGTR | 1 cut(s) | 675 |
| BsaHI | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| BsaI | GGTCTC | 2 cut(s) | 224, 241 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 182, 740 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 711, 741, 810, 840 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 390, 620 |
| Bse118I | RCCGGY | 3 cut(s) | 433, 570, 955 |
| Bse1I | ACTGG | 1 cut(s) | 506 |
| BseBI | CCWGG | 3 cut(s) | 264, 477, 725 |
| BseDI | CCNNGG | 3 cut(s) | 30, 182, 740 |
| BseGI | GGATG | 3 cut(s) | 334, 598, 636 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 390, 620 |
| BseMII | CTCAG | 2 cut(s) | 84, 328 |
| BseNI | ACTGG | 1 cut(s) | 506 |
| BseSI | GKGCMC | 2 cut(s) | 732, 861 |
| BseX3I | CGGCCG | 1 cut(s) | 953 |
| BseXI | GCAGC | 5 cut(s) | 749, 756, 798, 808, 947 |
| BseYI | CCCAGC | 1 cut(s) | 789 |
| Bsh1285I | CGRYCG | 2 cut(s) | 178, 956 |
| BshFI | GGCC | 4 cut(s) | 202, 667, 723, 955 |
| BshNI | GGYRCC | 1 cut(s) | 856 |
| BsiEI | CGRYCG | 2 cut(s) | 178, 956 |
| BsiHKAI | GWGCWC | 1 cut(s) | 732 |
| BsiSI | CCGG | 9 cut(s) | 15, 434, 456, 571, 614, 714, 740, 956, 977 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 390, 620 |
| BsmAI | GTCTC | 7 cut(s) | 224, 241, 431, 572, 899, 920, 943 |
| BsmBI | CGTCTC | 4 cut(s) | 431, 572, 920, 943 |
| BsnI | GGCC | 4 cut(s) | 202, 667, 723, 955 |
| Bso31I | GGTCTC | 2 cut(s) | 224, 241 |
| Bsp1286I | GDGCHC | 3 cut(s) | 280, 732, 861 |
| Bsp143I | GATC | 1 cut(s) | 175 |
| BspANI | GGCC | 4 cut(s) | 202, 667, 723, 955 |
| BspCNI | CTCAG | 2 cut(s) | 85, 327 |
| BspLI | GGNNCC | 2 cut(s) | 279, 858 |
| BspT107I | GGYRCC | 1 cut(s) | 856 |
| BspTNI | GGTCTC | 2 cut(s) | 224, 241 |
| BsrFI | RCCGGY | 3 cut(s) | 433, 570, 955 |
| BsrI | ACTGG | 1 cut(s) | 506 |
| BssAI | RCCGGY | 3 cut(s) | 433, 570, 955 |
| BssECI | CCNNGG | 3 cut(s) | 30, 182, 740 |
| BssMI | GATC | 1 cut(s) | 175 |
| BssNI | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| Bst2UI | CCWGG | 3 cut(s) | 264, 477, 725 |
| Bst4CI | ACNGT | 2 cut(s) | 240, 483 |
| BstACI | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 736 |
| BstBAI | YACGTR | 1 cut(s) | 675 |
| BstC8I | GCNNGC | 7 cut(s) | 435, 572, 694, 767, 779, 796, 814 |
| BstDEI | CTNAG | 5 cut(s) | 60, 93, 209, 314, 909 |
| BstDSI | CCRYGG | 2 cut(s) | 30, 182 |
| BstF5I | GGATG | 3 cut(s) | 334, 598, 636 |
| BstHHI | GCGC | 1 cut(s) | 750 |
| BstKTI | GATC | 1 cut(s) | 178 |
| BstMAI | GTCTC | 7 cut(s) | 224, 241, 431, 572, 899, 920, 943 |
| BstMBI | GATC | 1 cut(s) | 175 |
| BstMCI | CGRYCG | 2 cut(s) | 178, 956 |
| BstNI | CCWGG | 3 cut(s) | 264, 477, 725 |
| BstNSI | RCATGY | 1 cut(s) | 272 |
| BstSCI | CCNGG | 6 cut(s) | 14, 262, 454, 475, 723, 739 |
| BstSLI | GKGCMC | 2 cut(s) | 732, 861 |
| BstV1I | GCAGC | 5 cut(s) | 749, 756, 798, 808, 947 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 675 |
| BstZI | CGGCCG | 1 cut(s) | 953 |
| BsuRI | GGCC | 4 cut(s) | 202, 667, 723, 955 |
| BtgI | CCRYGG | 2 cut(s) | 30, 182 |
| BtsCI | GGATG | 3 cut(s) | 334, 598, 636 |
| BtsIMutI | CAGTG | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 7 cut(s) | 435, 572, 694, 767, 779, 796, 814 |
| CfoI | GCGC | 1 cut(s) | 750 |
| Cfr10I | RCCGGY | 3 cut(s) | 433, 570, 955 |
| Cfr13I | GGNCC | 2 cut(s) | 85, 321 |
| CseI | GACGC | 1 cut(s) | 719 |
| Csp6I | GTAC | 1 cut(s) | 619 |
| CviAII | CATG | 4 cut(s) | 39, 269, 273, 464 |
| CviQI | GTAC | 1 cut(s) | 619 |
| DdeI | CTNAG | 5 cut(s) | 60, 93, 209, 314, 909 |
| DpnI | GATC | 1 cut(s) | 177 |
| DpnII | GATC | 1 cut(s) | 175 |
| EaeI | YGGCCR | 1 cut(s) | 953 |
| EagI | CGGCCG | 1 cut(s) | 953 |
| EciI | GGCGGA | 3 cut(s) | 410, 599, 890 |
| EclXI | CGGCCG | 1 cut(s) | 953 |
| Eco147I | AGGCCT | 1 cut(s) | 723 |
| Eco24I | GRGCYC | 1 cut(s) | 280 |
| Eco31I | GGTCTC | 2 cut(s) | 224, 241 |
| Eco47I | GGWCC | 2 cut(s) | 85, 321 |
| Eco52I | CGGCCG | 1 cut(s) | 953 |
| Eco57I | CTGAAG | 1 cut(s) | 911 |
| Eco72I | CACGTG | 1 cut(s) | 675 |
| EcoRII | CCWGG | 3 cut(s) | 262, 475, 723 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| EcoT38I | GRGCYC | 1 cut(s) | 280 |
| Esp3I | CGTCTC | 4 cut(s) | 431, 572, 920, 943 |
| FaeI | CATG | 4 cut(s) | 42, 272, 276, 467 |
| FaiI | YATR | 8 cut(s) | 40, 149, 155, 227, 270, 274, 302, 465 |
| FatI | CATG | 4 cut(s) | 38, 268, 272, 463 |
| FblI | GTMKAC | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 7 cut(s) | 690, 763, 770, 787, 822, 915, 936 |
| FokI | GGATG | 3 cut(s) | 321, 585, 623 |
| FriOI | GRGCYC | 1 cut(s) | 280 |
| Fsp4HI | GCNGC | 7 cut(s) | 690, 763, 770, 787, 822, 915, 936 |
| FspBI | CTAG | 1 cut(s) | 255 |
| GlaI | GCGC | 1 cut(s) | 749 |
| GluI | GCNGC | 7 cut(s) | 690, 763, 770, 787, 822, 915, 936 |
| GsaI | CCCAGC | 1 cut(s) | 793 |
| HaeIII | GGCC | 4 cut(s) | 202, 667, 723, 955 |
| HapII | CCGG | 9 cut(s) | 15, 434, 456, 571, 614, 714, 740, 956, 977 |
| HgaI | GACGC | 1 cut(s) | 719 |
| HhaI | GCGC | 1 cut(s) | 750 |
| Hin1I | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| Hin1II | CATG | 4 cut(s) | 42, 272, 276, 467 |
| Hin6I | GCGC | 1 cut(s) | 748 |
| HinP1I | GCGC | 1 cut(s) | 748 |
| HinfI | GANTC | 1 cut(s) | 24 |
| HpaII | CCGG | 9 cut(s) | 15, 434, 456, 571, 614, 714, 740, 956, 977 |
| Hpy166II | GTNNAC | 2 cut(s) | 130, 730 |
| Hpy188I | TCNGA | 2 cut(s) | 317, 354 |
| Hpy188III | TCNNGA | 3 cut(s) | 221, 255, 549 |
| Hpy8I | GTNNAC | 2 cut(s) | 130, 730 |
| Hpy99I | CGWCG | 4 cut(s) | 80, 164, 412, 713 |
| HpyAV | CCTTC | 3 cut(s) | 461, 502, 886 |
| HpyCH4III | ACNGT | 2 cut(s) | 240, 483 |
| HpyCH4IV | ACGT | 5 cut(s) | 380, 407, 625, 674, 683 |
| HpyCH4V | TGCA | 2 cut(s) | 272, 730 |
| HpyF3I | CTNAG | 5 cut(s) | 60, 93, 209, 314, 909 |
| HpySE526I | ACGT | 5 cut(s) | 380, 407, 625, 674, 683 |
| Hsp92I | GRCGYC | 5 cut(s) | 380, 407, 625, 683, 711 |
| Hsp92II | CATG | 4 cut(s) | 42, 272, 276, 467 |
| HspAI | GCGC | 1 cut(s) | 748 |
| KroI | GCCGGC | 2 cut(s) | 433, 570 |
| KroNI | GCCGGC | 2 cut(s) | 435, 572 |
| Kzo9I | GATC | 1 cut(s) | 175 |
| LmnI | GCTCC | 3 cut(s) | 283, 783, 818 |
| Lsp1109I | GCAGC | 5 cut(s) | 749, 756, 798, 808, 947 |
| MaeI | CTAG | 1 cut(s) | 255 |
| MaeII | ACGT | 5 cut(s) | 380, 407, 625, 674, 683 |
| MalI | GATC | 1 cut(s) | 177 |
| MboI | GATC | 1 cut(s) | 175 |
| MboII | GAAGA | 3 cut(s) | 108, 697, 878 |
| MhlI | GDGCHC | 3 cut(s) | 280, 732, 861 |
| MluCI | AATT | 1 cut(s) | 970 |
| MmeI | TCCRAC | 1 cut(s) | 63 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MreI | CGCCGGCG | 1 cut(s) | 570 |
| MroNI | GCCGGC | 2 cut(s) | 433, 570 |
| MseI | TTAA | 3 cut(s) | 167, 396, 609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 673 |
| MspA1I | CMGCKG | 2 cut(s) | 689, 789 |
| MspI | CCGG | 9 cut(s) | 15, 434, 456, 571, 614, 714, 740, 956, 977 |
| MspR9I | CCNGG | 6 cut(s) | 16, 264, 456, 477, 725, 741 |
| MvaI | CCWGG | 3 cut(s) | 264, 477, 725 |
| NaeI | GCCGGC | 2 cut(s) | 435, 572 |
| NciI | CCSGG | 3 cut(s) | 16, 456, 741 |
| NdeII | GATC | 1 cut(s) | 175 |
| NgoMIV | GCCGGC | 2 cut(s) | 433, 570 |
| NlaIII | CATG | 4 cut(s) | 42, 272, 276, 467 |
| NlaIV | GGNNCC | 2 cut(s) | 279, 858 |
| NmeAIII | GCCGAG | 1 cut(s) | 178 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| NspI | RCATGY | 1 cut(s) | 272 |
| OliI | CACNNNNGTG | 1 cut(s) | 673 |
| PceI | AGGCCT | 1 cut(s) | 723 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 680, 935 |
| PdiI | GCCGGC | 2 cut(s) | 435, 572 |
| PfeI | GAWTC | 1 cut(s) | 24 |
| PflFI | GACNNNGTC | 1 cut(s) | 409 |
| PfoI | TCCNGGA | 2 cut(s) | 454, 475 |
| PkrI | GCNGC | 7 cut(s) | 691, 764, 771, 788, 823, 916, 937 |
| Ple19I | CGATCG | 1 cut(s) | 178 |
| PmaCI | CACGTG | 1 cut(s) | 675 |
| PmlI | CACGTG | 1 cut(s) | 675 |
| Ppu21I | YACGTR | 1 cut(s) | 675 |
| Psp6I | CCWGG | 3 cut(s) | 262, 475, 723 |
| PspCI | CACGTG | 1 cut(s) | 675 |
| PspFI | CCCAGC | 1 cut(s) | 789 |
| PspGI | CCWGG | 3 cut(s) | 262, 475, 723 |
| PspN4I | GGNNCC | 2 cut(s) | 279, 858 |
| PspPI | GGNCC | 2 cut(s) | 85, 321 |
| PsyI | GACNNNGTC | 1 cut(s) | 409 |
| PvuI | CGATCG | 1 cut(s) | 178 |
| PvuII | CAGCTG | 1 cut(s) | 789 |
| RsaI | GTAC | 1 cut(s) | 620 |
| RsaNI | GTAC | 1 cut(s) | 619 |
| RseI | CAYNNNNRTG | 1 cut(s) | 673 |
| SaqAI | TTAA | 3 cut(s) | 167, 396, 609 |
| SatI | GCNGC | 7 cut(s) | 690, 763, 770, 787, 822, 915, 936 |
| Sau3AI | GATC | 1 cut(s) | 175 |
| Sau96I | GGNCC | 2 cut(s) | 85, 321 |
| ScrFI | CCNGG | 6 cut(s) | 16, 264, 456, 477, 725, 741 |
| SduI | GDGCHC | 3 cut(s) | 280, 732, 861 |
| SgrAI | CRCCGGYG | 1 cut(s) | 570 |
| SinI | GGWCC | 2 cut(s) | 85, 321 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 673 |
| Sse9I | AATT | 1 cut(s) | 970 |
| SseBI | AGGCCT | 1 cut(s) | 723 |
| SspMI | CTAG | 1 cut(s) | 255 |
| StuI | AGGCCT | 1 cut(s) | 723 |
| StyD4I | CCNGG | 6 cut(s) | 14, 262, 454, 475, 723, 739 |
| TaaI | ACNGT | 2 cut(s) | 240, 483 |
| TaiI | ACGT | 5 cut(s) | 383, 410, 628, 677, 686 |
| TaqI | TCGA | 3 cut(s) | 178, 222, 708 |
| TasI | AATT | 1 cut(s) | 970 |
| TauI | GCSGC | 2 cut(s) | 692, 917 |
| TfiI | GAWTC | 1 cut(s) | 24 |
| Tru1I | TTAA | 3 cut(s) | 167, 396, 609 |
| Tru9I | TTAA | 3 cut(s) | 167, 396, 609 |
| TscAI | CASTG | 1 cut(s) | 243 |
| TseI | GCWGC | 5 cut(s) | 762, 769, 786, 821, 935 |
| TspDTI | ATGAA | 1 cut(s) | 638 |
| TspGWI | ACGGA | 5 cut(s) | 285, 403, 618, 636, 944 |
| TspRI | CASTG | 1 cut(s) | 243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 409 |
| VneI | GTGCAC | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 2 cut(s) | 85, 321 |
| XapI | RAATTY | 1 cut(s) | 970 |
| XbaI | TCTAGA | 1 cut(s) | 254 |
| XceI | RCATGY | 1 cut(s) | 272 |
| XmiI | GTMKAC | 1 cut(s) | 129 |
| XspI | CTAG | 1 cut(s) | 255 |
| ZraI | GACGTC | 4 cut(s) | 381, 408, 626, 684 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |