FvH4_4g23221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
25781013 .. 25782183
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23221.t1

Sequence Viewer

Length: 573 bp
ATGATTAGAGGTGGACGTCCGCAACGGAAAAAAAGTGCGGATGCCACCTCAAGGAGCCTCACTCCGGCGTCGATGGAAGTTTTGATTCCGTCCTTAGAGACCTCAAACATCCCAGACGTCATTACCTTCAAGGTGAAGGCCACGCACTTCAATCTTGACTTCAAACTCGTCGTCGGCGAGCCCACTGGCAAGAAGAAGGTAAGGATGGAGGCGACTGTCCGTTCTCCACCCTTCGGCGCCGGTGACGGCGCGTCTCCACCCCATAAGACTCCAGCAGTGTCCCCGACCACTCTCCCTCCCCGACGAGGTGGAGGCGCGCCGTCGCCGGCGCCGGAGGGTGGAGAACGGACTGACGTCCGCACTTTAAGGCCGGTGCGGACGTCCGCTCCTGATCCGGCCTGTCGATGCGAGGATGTGACACCCCTACTTGCTCCATTTGAGTTTCCATTTTTACCTAAGATGAGGAAGTTGTCTTTGACTGAGGGAGAGGGTTGGTTCAAGGGTGGAACGCTGTTGCAAGAGGTTTCGGGTTCTGTTGATGGCCTTCATGCAGAGGAGCCCGGTCATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.28

Weight (kDa)

9.23

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 4 cut(s) 19, 120, 357, 383
AccB1I GGYRCC 2 cut(s) 236, 328
AccBSI CCGCTC 1 cut(s) 386
AccII CGCG 2 cut(s) 251, 317
AciI CCGC 5 cut(s) 20, 38, 358, 376, 384
AclWI GGATC 1 cut(s) 386
AcyI GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
AfiI CCNNNNNNNGG 5 cut(s) 51, 64, 233, 305, 338
AgsI TTSAA 4 cut(s) 130, 151, 163, 499
AhdI GACNNNNNGTC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 92, 258
AlwI GGATC 1 cut(s) 386
AoxI GGCC 4 cut(s) 138, 368, 396, 541
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AscI GGCGCGCC 1 cut(s) 315
AspLEI GCGC 5 cut(s) 239, 251, 317, 319, 331
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 145, 254
BanI GGYRCC 2 cut(s) 236, 328
BanII GRGCYC 2 cut(s) 183, 561
BccI CCATC 3 cut(s) 67, 199, 533
BceAI ACGGC 2 cut(s) 262, 304
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 92, 258
BfoI RGCGCY 2 cut(s) 240, 332
Bme1390I CCNGG 1 cut(s) 561
BmeRI GACNNNNNGTC 1 cut(s) 250
BmiI GGNNCC 4 cut(s) 56, 238, 330, 558
BmrFI CCNGG 1 cut(s) 561
BmsI GCATC 2 cut(s) 31, 395
BoxI GACNNNNGTC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 561
BsaHI GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
BsaI GGTCTC 1 cut(s) 92
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 370, 400
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 64, 233, 305, 338
Bse118I RCCGGY 3 cut(s) 239, 325, 370
Bse1I ACTGG 1 cut(s) 190
BseGI GGATG 4 cut(s) 46, 108, 210, 418
BseLI CCNNNNNNNGG 5 cut(s) 51, 64, 233, 305, 338
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 190
BsePI GCGCGC 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 569
Bsh1236I CGCG 2 cut(s) 251, 317
BshFI GGCC 4 cut(s) 140, 370, 398, 543
BshNI GGYRCC 2 cut(s) 236, 328
BsiSI CCGG 7 cut(s) 65, 240, 326, 332, 371, 395, 561
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 5 cut(s) 51, 64, 233, 305, 338
BsmAI GTCTC 2 cut(s) 92, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 4 cut(s) 140, 370, 398, 543
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 183, 561
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 5 cut(s) 20, 38, 358, 376, 384
BspANI GGCC 4 cut(s) 140, 370, 398, 543
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 2 cut(s) 251, 317
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 4 cut(s) 56, 238, 330, 558
BspPI GGATC 1 cut(s) 386
BspT107I GGYRCC 2 cut(s) 236, 328
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 386
BsrFI RCCGGY 3 cut(s) 239, 325, 370
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 3 cut(s) 239, 325, 370
BssHII GCGCGC 1 cut(s) 315
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
BstC8I GCNNGC 3 cut(s) 179, 317, 327
BstDEI CTNAG 3 cut(s) 94, 456, 480
BstF5I GGATG 4 cut(s) 46, 108, 210, 418
BstFNI CGCG 2 cut(s) 251, 317
BstH2I RGCGCY 2 cut(s) 240, 332
BstHHI GCGC 5 cut(s) 239, 251, 317, 319, 331
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 2 cut(s) 92, 258
BstMBI GATC 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 559
BstUI CGCG 2 cut(s) 251, 317
BsuRI GGCC 4 cut(s) 140, 370, 398, 543
BtsCI GGATG 4 cut(s) 46, 108, 210, 418
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 183, 282
Cac8I GCNNGC 3 cut(s) 179, 317, 327
CciI TCATGA 1 cut(s) 565
CfoI GCGC 5 cut(s) 239, 251, 317, 319, 331
Cfr10I RCCGGY 3 cut(s) 239, 325, 370
CseI GACGC 2 cut(s) 57, 240
CviAII CATG 2 cut(s) 548, 566
CviJI RGCY 7 cut(s) 57, 140, 181, 370, 398, 543, 559
CviKI_1 RGCY 7 cut(s) 57, 140, 181, 370, 398, 543, 559
DdeI CTNAG 3 cut(s) 94, 456, 480
DinI GGCGCC 2 cut(s) 238, 330
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DriI GACNNNNNGTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 183, 561
Eco31I GGTCTC 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 183, 561
EgeI GGCGCC 2 cut(s) 238, 330
EheI GGCGCC 2 cut(s) 238, 330
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 2 cut(s) 551, 569
FaiI YATR 3 cut(s) 264, 549, 567
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 547, 565
FokI GGATG 4 cut(s) 53, 95, 217, 425
FriOI GRGCYC 2 cut(s) 183, 561
GlaI GCGC 5 cut(s) 238, 250, 316, 318, 330
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 2 cut(s) 240, 332
HaeIII GGCC 4 cut(s) 140, 370, 398, 543
HapII CCGG 7 cut(s) 65, 240, 326, 332, 371, 395, 561
HgaI GACGC 2 cut(s) 57, 240
HhaI GCGC 5 cut(s) 239, 251, 317, 319, 331
Hin1I GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
Hin1II CATG 2 cut(s) 551, 569
Hin6I GCGC 5 cut(s) 237, 249, 315, 317, 329
HinP1I GCGC 5 cut(s) 237, 249, 315, 317, 329
HinfI GANTC 2 cut(s) 85, 268
HpaII CCGG 7 cut(s) 65, 240, 326, 332, 371, 395, 561
HphI GGTGA 2 cut(s) 145, 254
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 155, 389, 566
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 5 cut(s) 73, 173, 176, 306, 325
HpyAV CCTTC 5 cut(s) 130, 136, 190, 241, 554
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 4 cut(s) 16, 117, 354, 380
HpyCH4V TGCA 2 cut(s) 517, 551
HpyF3I CTNAG 3 cut(s) 94, 456, 480
HpySE526I ACGT 4 cut(s) 16, 117, 354, 380
Hsp92I GRCGYC 7 cut(s) 16, 68, 117, 237, 329, 354, 380
Hsp92II CATG 2 cut(s) 551, 569
HspAI GCGC 5 cut(s) 237, 249, 315, 317, 329
KasI GGCGCC 2 cut(s) 236, 328
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 4 cut(s) 54, 391, 436, 556
LweI GCATC 2 cut(s) 31, 395
MaeII ACGT 4 cut(s) 16, 117, 354, 380
MaeIII GTNAC 2 cut(s) 242, 415
MalI GATC 1 cut(s) 393
MbiI CCGCTC 1 cut(s) 386
MboI GATC 1 cut(s) 391
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 183, 561
Mly113I GGCGCC 2 cut(s) 237, 329
MlyI GAGTC 1 cut(s) 262
MreI CGCCGGCG 1 cut(s) 325
MroNI GCCGGC 1 cut(s) 325
MseI TTAA 1 cut(s) 365
MspI CCGG 7 cut(s) 65, 240, 326, 332, 371, 395, 561
MspR9I CCNGG 1 cut(s) 561
MvnI CGCG 2 cut(s) 251, 317
NaeI GCCGGC 1 cut(s) 327
NarI GGCGCC 2 cut(s) 237, 329
NciI CCSGG 1 cut(s) 561
NdeII GATC 1 cut(s) 391
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 2 cut(s) 551, 569
NlaIV GGNNCC 4 cut(s) 56, 238, 330, 558
NmuCI GTSAC 2 cut(s) 242, 415
PagI TCATGA 1 cut(s) 565
PalAI GGCGCGCC 1 cut(s) 315
PauI GCGCGC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 85
PleI GAGTC 1 cut(s) 262
PluTI GGCGCC 2 cut(s) 240, 332
PpsI GAGTC 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 353
PspN4I GGNNCC 4 cut(s) 56, 238, 330, 558
PteI GCGCGC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 365
Sau3AI GATC 1 cut(s) 391
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 561
SduI GDGCHC 2 cut(s) 183, 561
SfaNI GCATC 2 cut(s) 31, 395
SfoI GGCGCC 2 cut(s) 238, 330
SgrAI CRCCGGYG 2 cut(s) 239, 325
SgsI GGCGCGCC 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SsiI CCGC 5 cut(s) 20, 38, 358, 376, 384
SspDI GGCGCC 2 cut(s) 236, 328
StyD4I CCNGG 1 cut(s) 559
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 4 cut(s) 19, 120, 357, 383
TaqI TCGA 2 cut(s) 71, 403
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 190, 282
TseFI GTSAC 2 cut(s) 242, 415
Tsp45I GTSAC 2 cut(s) 242, 415
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 4 cut(s) 40, 78, 209, 361
TspRI CASTG 2 cut(s) 190, 282
ZraI GACGTC 4 cut(s) 17, 118, 355, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.