FvH4_2g08550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
7488865 .. 7489477
613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08550.t1

Sequence Viewer

Length: 366 bp
ATGAGATGGTTTTGGTGGTGTGATGGGGTGAGTGGCAGACTCGTTTCTGAGTTGAAACGTGATCTGTTAAGGGAGGATGGTGGGTGGTATGGGGGAGAACAGATTCCAACGCCGTTGACGAGGTCTTGTGGAGGCTCTGGTGTGGCTGATCGATCTGGATCTAGCCAAAAAGGGTGGGTGATCTCTACTTCAGGCGGCGAGCAGTTTGATGGTGCAGTGATCGACCAGAGACCGAAGGTTGGCGGCGATGTGGTGGGCTCGATGGCGGGGAGTGATTTGGATACTGGTGGACTATGTCCTAGAAAGCGCACTCTGCGTACCATGTTTGTCCTAATGAGGCAGCGAGTTCCTTACTTTGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

9.25

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 195, 243, 266
AclWI GGATC 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 40, 190
BanII GRGCYC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 352
BccI CCATC 4 cut(s) 17, 71, 203, 256
BceAI ACGGC 1 cut(s) 97
BciVI GTATCC 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 162, 300
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 3 cut(s) 196, 244, 341
BlsI GCNGC 3 cut(s) 197, 245, 342
Bsa29I ATCGAT 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 352
BsgI GTGCAG 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 6 cut(s) 61, 148, 152, 158, 180, 219
BspACI CCGC 3 cut(s) 195, 243, 266
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 151
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 289
BssMI GATC 6 cut(s) 61, 148, 152, 158, 180, 219
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 6 cut(s) 64, 151, 155, 161, 183, 222
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 6 cut(s) 61, 148, 152, 158, 180, 219
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
Bsu15I ATCGAT 1 cut(s) 151
BsuI GTATCC 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 200
CfoI GCGC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 318
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 1 cut(s) 322
CviJI RGCY 4 cut(s) 135, 146, 165, 258
CviKI_1 RGCY 4 cut(s) 135, 146, 165, 258
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 48
DpnI GATC 6 cut(s) 63, 150, 154, 160, 182, 221
DpnII GATC 6 cut(s) 61, 148, 152, 158, 180, 219
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 90, 295, 323
FatI CATG 1 cut(s) 321
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 196, 244, 341
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 196, 244, 341
FspBI CTAG 2 cut(s) 162, 300
GlaI GCGC 1 cut(s) 308
GluI GCNGC 3 cut(s) 196, 244, 341
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 2 cut(s) 39, 103
HphI GGTGA 2 cut(s) 40, 190
Hpy166II GTNNAC 2 cut(s) 117, 290
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 2 cut(s) 117, 290
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 6 cut(s) 61, 148, 152, 158, 180, 219
LpnPI CCDG 5 cut(s) 123, 141, 177, 239, 270
Lsp1109I GCAGC 1 cut(s) 352
MaeI CTAG 2 cut(s) 162, 300
MaeII ACGT 1 cut(s) 58
MalI GATC 6 cut(s) 63, 150, 154, 160, 182, 221
MboI GATC 6 cut(s) 61, 148, 152, 158, 180, 219
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 260
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 67, 114, 125, 330
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 6 cut(s) 61, 148, 152, 158, 180, 219
NlaIII CATG 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 103
PflFI GACNNNGTC 2 cut(s) 121, 294
PkrI GCNGC 3 cut(s) 197, 245, 342
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 2 cut(s) 121, 294
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 196, 244, 341
Sau3AI GATC 6 cut(s) 61, 148, 152, 158, 180, 219
SchI GAGTC 1 cut(s) 33
SduI GDGCHC 1 cut(s) 260
SetI ASST 3 cut(s) 61, 125, 240
SsiI CCGC 3 cut(s) 195, 243, 266
SspMI CTAG 2 cut(s) 162, 300
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 151, 222, 260
TaqII GACCGA 1 cut(s) 247
TauI GCSGC 2 cut(s) 198, 246
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 340
TspRI CASTG 1 cut(s) 222
Tth111I GACNNNGTC 2 cut(s) 121, 294
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 162, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.