FvH4_4g06301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
5615442 .. 5619450
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06301.t1

Sequence Viewer

Length: 816 bp
ATGGTTAATGGAGTAAAATCTGAGCTCCACCCATTTTGTATATGCAACTATGCAAGTTGCTGTTGTGTCCATCAGAAACAGTGGCGCCACCGCTTAGTATTTGGATGGCGACGCCGTGGTGTCGGTGATTTGGTTGGTGTGGTTGGTTGCTTACTTGCTTTTGGGGTTAGAACCATTCTAGTTTTCAATTCAGCAGACTCTTGTTCTAAGTTTGGTTCGAAGCTTGATAGAAAGCCCCATATTTCGGCTTGTGCAAGGATCGGTAGTTCGTACAAGGTTGTCAAGTTTCATGACAGTGAGATCATGGTCGAAATCTTTATGGTTTTGTCATGCTTTGGTCGGCGGTCGATGGTGGCCTCTGACCTTTGGATTCGGTGGCGGCGTCATGGCTTTAGTCGGGCTAGGGCGATGTGGATCGGGGTCGAGGTTGGCAACGAAGGTGGCGGTGGTGGTGGCTGGGCCTTCTTGCCGGATGTAGAGCGGACGTCCGCACTCCGGCTTAAAGTGCGGACTTCGTCCGTTCTCTGCCGTCTCACGCCGGCAATGGCTTCTCTCCTTCCCGGACGACAGCACAGGCTTCCAGGACGGCTTCTCTCCTTCCAGGACTGGCCGGCGACAAGTTTTCCGGCCAACCTTGATCAATCATGGTGTTTTCCGGCCAGAGCTTCAATCCGGCCAGAAAACTTGTCGTTGGCCAGTCCTGGAAGGAGAGAACCCGTCCTAAAGCCTGTGCTATCGTCCGGGAAGCAGAGAAGCCGTCGCCGGCGTGAGACGGCAGAGAACGGACGAAGTCCGCACTTTAAACCAGAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.46

Weight (kDa)

10.58

Isoelectric Point (pI)

67.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 481
AciI CCGC 8 cut(s) 91, 343, 379, 444, 481, 489, 508, 794
AclWI GGATC 2 cut(s) 266, 422
AcoI YGGCCR 5 cut(s) 608, 627, 657, 674, 693
AcyI GRCGYC 4 cut(s) 85, 112, 382, 485
AfaI GTAC 2 cut(s) 272, 812
AfiI CCNNNNNNNGG 2 cut(s) 244, 495
AgsI TTSAA 2 cut(s) 187, 669
AjnI CCWGG 3 cut(s) 580, 600, 700
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AluBI AGCT 3 cut(s) 25, 223, 665
AluI AGCT 3 cut(s) 25, 223, 665
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 536, 764
AlwI GGATC 2 cut(s) 266, 422
AoxI GGCC 7 cut(s) 354, 459, 608, 627, 657, 674, 693
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 2 cut(s) 561, 742
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 218
BalI TGGCCA 1 cut(s) 695
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 3 cut(s) 78, 99, 343
BceAI ACGGC 5 cut(s) 99, 513, 602, 741, 789
BciT130I CCWGG 3 cut(s) 582, 602, 702
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 2 cut(s) 561, 742
BcoDI GTCTC 2 cut(s) 536, 764
BfaI CTAG 2 cut(s) 179, 402
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 5 cut(s) 561, 582, 602, 702, 742
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 5 cut(s) 561, 582, 602, 702, 742
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 561, 742
BsaBI GATNNNNATC 1 cut(s) 413
BsaHI GRCGYC 4 cut(s) 85, 112, 382, 485
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 495
Bse118I RCCGGY 3 cut(s) 538, 610, 762
Bse1I ACTGG 2 cut(s) 611, 696
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 3 cut(s) 582, 602, 702
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 110, 478
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 244, 495
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 611, 696
BseYI CCCAGC 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 7 cut(s) 356, 461, 610, 629, 659, 676, 695
BshNI GGYRCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 244, 495
BsmAI GTCTC 2 cut(s) 536, 764
BsmBI CGTCTC 2 cut(s) 536, 764
BsnI GGCC 7 cut(s) 356, 461, 610, 629, 659, 676, 695
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 258, 300, 414, 637
BspACI CCGC 8 cut(s) 91, 343, 379, 444, 481, 489, 508, 794
BspANI GGCC 7 cut(s) 356, 461, 610, 629, 659, 676, 695
BspCNI CTCAG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 266, 422
BspT104I TTCGAA 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 3 cut(s) 538, 610, 762
BsrI ACTGG 2 cut(s) 611, 696
BssAI RCCGGY 3 cut(s) 538, 610, 762
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 4 cut(s) 258, 300, 414, 637
BssNI GRCGYC 4 cut(s) 85, 112, 382, 485
Bst2UI CCWGG 3 cut(s) 582, 602, 702
Bst4CI ACNGT 2 cut(s) 81, 296
BstACI GRCGYC 4 cut(s) 85, 112, 382, 485
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 540, 612, 764
BstDEI CTNAG 3 cut(s) 21, 94, 207
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 2 cut(s) 110, 478
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 4 cut(s) 261, 303, 417, 640
BstMAI GTCTC 2 cut(s) 536, 764
BstMBI GATC 4 cut(s) 258, 300, 414, 637
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNI CCWGG 3 cut(s) 582, 602, 702
BstSCI CCNGG 5 cut(s) 559, 580, 600, 700, 740
BsuRI GGCC 7 cut(s) 356, 461, 610, 629, 659, 676, 695
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 422
BtsCI GGATG 2 cut(s) 110, 478
BtsIMutI CAGTG 2 cut(s) 86, 301
Cac8I GCNNGC 3 cut(s) 540, 612, 764
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 3 cut(s) 538, 610, 762
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 2 cut(s) 120, 371
Csp6I GTAC 2 cut(s) 271, 811
CspCI CAANNNNNGTGG 4 cut(s) 17, 52, 421, 456
CviAII CATG 5 cut(s) 290, 304, 330, 386, 645
CviQI GTAC 2 cut(s) 271, 811
DdeI CTNAG 3 cut(s) 21, 94, 207
DinI GGCGCC 1 cut(s) 86
DpnI GATC 4 cut(s) 260, 302, 416, 639
DpnII GATC 4 cut(s) 258, 300, 414, 637
DraI TTTAAA 1 cut(s) 802
EaeI YGGCCR 5 cut(s) 608, 627, 657, 674, 693
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 580, 600, 700
EcoT38I GRGCYC 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 86
EheI GGCGCC 1 cut(s) 86
Esp3I CGTCTC 2 cut(s) 536, 764
FaeI CATG 5 cut(s) 293, 307, 333, 389, 648
FatI CATG 5 cut(s) 289, 303, 329, 385, 644
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 117, 485
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 2 cut(s) 179, 402
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 380
GsaI CCCAGC 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 7 cut(s) 356, 461, 610, 629, 659, 676, 695
HgaI GACGC 2 cut(s) 120, 371
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 4 cut(s) 85, 112, 382, 485
Hin1II CATG 5 cut(s) 293, 307, 333, 389, 648
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 197, 370
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 22, 75, 361
Hpy188III TCNNGA 1 cut(s) 290
Hpy99I CGWCG 2 cut(s) 114, 762
HpyAV CCTTC 5 cut(s) 431, 472, 566, 607, 699
HpyCH4III ACNGT 2 cut(s) 81, 296
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 3 cut(s) 45, 53, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 3 cut(s) 21, 94, 207
HpySE526I ACGT 1 cut(s) 485
Hsp92I GRCGYC 4 cut(s) 85, 112, 382, 485
Hsp92II CATG 5 cut(s) 293, 307, 333, 389, 648
HspAI GCGC 1 cut(s) 85
KasI GGCGCC 1 cut(s) 84
KroI GCCGGC 3 cut(s) 538, 610, 762
KroNI GCCGGC 3 cut(s) 540, 612, 764
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 258, 300, 414, 637
LmnI GCTCC 1 cut(s) 30
MaeI CTAG 2 cut(s) 179, 402
MaeII ACGT 1 cut(s) 485
MalI GATC 4 cut(s) 260, 302, 416, 639
MbiI CCGCTC 1 cut(s) 481
MboI GATC 4 cut(s) 258, 300, 414, 637
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 695
MluCI AATT 1 cut(s) 187
MluNI TGGCCA 1 cut(s) 695
Mly113I GGCGCC 1 cut(s) 85
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 367, 418
Mox20I TGGCCA 1 cut(s) 695
MreI CGCCGGCG 1 cut(s) 762
MroNI GCCGGC 3 cut(s) 538, 610, 762
MscI TGGCCA 1 cut(s) 695
MseI TTAA 3 cut(s) 6, 501, 801
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 695
MspR9I CCNGG 5 cut(s) 561, 582, 602, 702, 742
MvaI CCWGG 3 cut(s) 582, 602, 702
MwoI GCNNNNNNNGC 1 cut(s) 505
NaeI GCCGGC 3 cut(s) 540, 612, 764
NarI GGCGCC 1 cut(s) 85
NciI CCSGG 2 cut(s) 561, 742
NdeII GATC 4 cut(s) 258, 300, 414, 637
NgoMIV GCCGGC 3 cut(s) 538, 610, 762
NlaIII CATG 5 cut(s) 293, 307, 333, 389, 648
NlaIV GGNNCC 1 cut(s) 86
NspV TTCGAA 1 cut(s) 218
PagI TCATGA 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PdiI GCCGGC 3 cut(s) 540, 612, 764
PfeI GAWTC 1 cut(s) 370
PflFI GACNNNGTC 2 cut(s) 514, 789
PfoI TCCNGGA 5 cut(s) 559, 580, 600, 700, 740
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 580, 600, 700
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 3 cut(s) 580, 600, 700
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 459
PsyI GACNNNGTC 2 cut(s) 514, 789
RsaI GTAC 2 cut(s) 272, 812
RsaNI GTAC 2 cut(s) 271, 811
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 6, 501, 801
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 4 cut(s) 258, 300, 414, 637
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 1 cut(s) 812
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 5 cut(s) 561, 582, 602, 702, 742
SduI GDGCHC 1 cut(s) 27
SetI ASST 9 cut(s) 27, 225, 279, 366, 429, 442, 488, 636, 667
SfoI GGCGCC 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 218
SgrAI CRCCGGYG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 187
SsiI CCGC 8 cut(s) 91, 343, 379, 444, 481, 489, 508, 794
SspDI GGCGCC 1 cut(s) 84
SspMI CTAG 2 cut(s) 179, 402
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 5 cut(s) 559, 580, 600, 700, 740
TaaI ACNGT 2 cut(s) 81, 296
TaiI ACGT 1 cut(s) 488
TaqI TCGA 4 cut(s) 218, 309, 347, 423
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 810
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 3 cut(s) 6, 501, 801
Tru9I TTAA 3 cut(s) 6, 501, 801
TscAI CASTG 2 cut(s) 86, 301
TspDTI ATGAA 1 cut(s) 278
TspGWI ACGGA 2 cut(s) 508, 798
TspRI CASTG 2 cut(s) 86, 301
Tth111I GACNNNGTC 2 cut(s) 514, 789
XspI CTAG 2 cut(s) 179, 402
ZraI GACGTC 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.