FvH4_3g10310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
6017697 .. 6019624
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10310.t1

Sequence Viewer

Length: 285 bp
ATGGATGCTTCACTGCAATTCGCGTTCTGTCACGTTTGCAGGCACGCTCACTTATACTGTTTGAGATTTCCCCAGGCAAAGCTTCTAGATGAAGGGGGCGGTCCAACTTACTTGTCTGATTCCAGTGCGGACATCCGCACGGCTCTTAAAGTGCGGACGTCCCTCCTTTCGCCACCGTACGGCACCGGCGAGGGCGCGCCTCCATCCCAGCGGACTCCAGCAGCTTTCCTGACCACTTTCCATCCCCGGCGAGTCTGCCGAATTCCAATTTTCGGGCCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.3

Weight (kDa)

8.86

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 2 cut(s) 23, 197
AciI CCGC 5 cut(s) 99, 128, 136, 154, 211
AcsI RAATTY 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 179, 272
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 82, 224
AluI AGCT 2 cut(s) 82, 224
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 261
AscI GGCGCGCC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 197, 199
AspS9I GGNCC 2 cut(s) 101, 275
AsuC2I CCSGG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 211, 249
BceAI ACGGC 2 cut(s) 156, 196
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 74, 247
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 101, 275
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 74, 247
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 72, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 272
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 72, 245
BseGI GGATG 4 cut(s) 10, 132, 203, 241
BseLI CCNNNNNNNGG 2 cut(s) 179, 272
BseNI ACTGG 1 cut(s) 123
BsePI GCGCGC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 207
Bsh1236I CGCG 2 cut(s) 23, 197
BshFI GGCC 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 186, 247
BsiWI CGTACG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 179, 272
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 277
BspACI CCGC 5 cut(s) 99, 128, 136, 154, 211
BspANI GGCC 1 cut(s) 277
BspFNI CGCG 2 cut(s) 23, 197
BspLI GGNNCC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 72, 245
BssHII GCGCGC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 59, 177
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 41, 45, 197
BstF5I GGATG 4 cut(s) 10, 132, 203, 241
BstFNI CGCG 2 cut(s) 23, 197
BstHHI GCGC 2 cut(s) 197, 199
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 245
BstUI CGCG 2 cut(s) 23, 197
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 277
BtsCI GGATG 4 cut(s) 10, 132, 203, 241
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 130
Cac8I GCNNGC 3 cut(s) 41, 45, 197
CfoI GCGC 2 cut(s) 197, 199
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 101, 275
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 4 cut(s) 82, 143, 224, 277
CviKI_1 RGCY 4 cut(s) 82, 143, 224, 277
CviQI GTAC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 72
FaiI YATR 1 cut(s) 55
FaqI GGGAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 4 cut(s) 17, 119, 190, 228
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 86
GlaI GCGC 2 cut(s) 196, 198
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 277
HapII CCGG 2 cut(s) 186, 247
HhaI GCGC 2 cut(s) 197, 199
Hin1I GRCGYC 1 cut(s) 158
Hin6I GCGC 2 cut(s) 195, 197
HinP1I GCGC 2 cut(s) 195, 197
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 3 cut(s) 119, 214, 252
HpaII CCGG 2 cut(s) 186, 247
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 86, 229
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 59, 177
HpyCH4IV ACGT 2 cut(s) 33, 158
HpyCH4V TGCA 2 cut(s) 16, 39
HpySE526I ACGT 2 cut(s) 33, 158
Hsp92I GRCGYC 1 cut(s) 158
HspAI GCGC 2 cut(s) 195, 197
LpnPI CCDG 9 cut(s) 25, 59, 86, 136, 199, 221, 231, 242, 260
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 33, 158
MaeIII GTNAC 1 cut(s) 29
MluCI AATT 3 cut(s) 17, 261, 267
MlyI GAGTC 2 cut(s) 208, 261
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 3 cut(s) 173, 184, 210
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 186, 247
MspR9I CCNGG 2 cut(s) 74, 247
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 23, 197
NciI CCSGG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 29
PalAI GGCGCGCC 1 cut(s) 195
PauI GCGCGC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 1 cut(s) 119
Pfl23II CGTACG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 208, 260
PpsI GAGTC 2 cut(s) 208, 260
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 72
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 101, 275
PteI GCGCGC 1 cut(s) 195
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 101, 275
SchI GAGTC 2 cut(s) 208, 261
ScrFI CCNGG 2 cut(s) 74, 247
SetI ASST 4 cut(s) 36, 84, 161, 226
SgrAI CRCCGGYG 1 cut(s) 185
SgsI GGCGCGCC 1 cut(s) 195
SinI GGWCC 1 cut(s) 101
Sse9I AATT 3 cut(s) 17, 261, 267
SsiI CCGC 5 cut(s) 99, 128, 136, 154, 211
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 72, 245
TaaI ACNGT 2 cut(s) 59, 177
TaiI ACGT 2 cut(s) 36, 161
TasI AATT 3 cut(s) 17, 261, 267
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 18, 130
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 18, 130
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 85
XspI CTAG 1 cut(s) 86
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.