FvH4_7g19710

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000118
Physical Location & Seq
Forward (+)
16177642 .. 16180168
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19710.t1

Sequence Viewer

Length: 648 bp
ATGAAGAATCTGAAATCTGGGCGAGTTTTCAGCACCGACGCGTCGCTCAAGTTAGCCTCCGACTGTGGAGATGTTGACGTCGTTGACGCCGAAGGAGGCGGAGATGCTCAGCCTTGTATTGGTGCTACAAGAGTCATCGATGCTTCGCTGTATTTCTTTGGGGAGGAATGCTCCTTACTCTTCAGCATCAGATCCCAGACCCCGTGTTGTCATCGGAACCTTGACATCTGTTTGGGATCTCCTGAGGAAGTTGCTTCGGTTCTGATCGAGTCATTCTTGGTTTGGATAGAAATATTGGGACTTCCGCCTACCTTAGTGAAGATGATCGAGTGCCCAAATCTAAAGAAACTGAGCAAGGACTTCCAATTCCTCACCTCTCTTGAAAGTCTTGACATCTCCAACTGTTTGAAGTTTGCAACCCTTATAGTGGAAGAGGGTCTTCCTATTTCACTTACGCAACTTTATATTGTTGGAGAGGATATGAAGCGGACGTCCGTACTCCGGCTTAAAGTGCGGACGTCGTCTGTTCTCCGCCGTCTCACGCCGGCGACGGTTTCTCTCCTTCCCGGACGACAGCACAGGCTTCCAGGACGGTTTCTCTCCTTCCAGGACTGGCCGGTGACAAGTTTTCTAGCCGGATTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

216

Amino Acids

23.64

Weight (kDa)

5.75

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 81, 494, 521
AccII CGCG 1 cut(s) 41
AciI CCGC 5 cut(s) 99, 305, 487, 514, 532
AclWI GGATC 2 cut(s) 186, 244
AcoI YGGCCR 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 166
AcyI GRCGYC 4 cut(s) 78, 87, 491, 518
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 3 cut(s) 119, 427, 501
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 3 cut(s) 383, 409, 643
AjnI CCWGG 2 cut(s) 586, 606
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 2 cut(s) 186, 244
AoxI GGCC 1 cut(s) 614
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 2 cut(s) 364, 631
AxyI CCTNAGG 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 431
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 588, 608
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 1 cut(s) 632
BlpI GCTNAGC 1 cut(s) 108
Bme1390I CCNGG 3 cut(s) 567, 588, 608
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 3 cut(s) 567, 588, 608
BmsI GCATC 3 cut(s) 94, 130, 195
BpiI GAAGAC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 4 cut(s) 78, 87, 491, 518
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 427, 501
Bse118I RCCGGY 2 cut(s) 544, 616
Bse1I ACTGG 1 cut(s) 617
Bse21I CCTNAGG 1 cut(s) 243
BseBI CCWGG 2 cut(s) 588, 608
BseCI ATCGAT 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 119, 427, 501
BseMII CTCAG 3 cut(s) 122, 234, 341
BseNI ACTGG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 616
BshVI ATCGAT 1 cut(s) 138
BsiSI CCGG 5 cut(s) 502, 545, 567, 617, 636
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 119, 427, 501
BsmAI GTCTC 1 cut(s) 542
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 4 cut(s) 191, 236, 264, 324
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 5 cut(s) 99, 305, 487, 514, 532
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 3 cut(s) 121, 235, 342
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 218
BspPI GGATC 2 cut(s) 186, 244
BsrFI RCCGGY 2 cut(s) 544, 616
BsrI ACTGG 1 cut(s) 617
BssAI RCCGGY 2 cut(s) 544, 616
BssMI GATC 4 cut(s) 191, 236, 264, 324
BssNI GRCGYC 4 cut(s) 78, 87, 491, 518
Bst2UI CCWGG 2 cut(s) 588, 608
Bst4CI ACNGT 4 cut(s) 65, 404, 553, 594
Bst6I CTCTTC 2 cut(s) 185, 426
BstACI GRCGYC 4 cut(s) 78, 87, 491, 518
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 4 cut(s) 108, 243, 313, 350
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 4 cut(s) 194, 239, 267, 327
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 4 cut(s) 191, 236, 264, 324
BstMWI GCNNNNNNNGC 1 cut(s) 511
BstNI CCWGG 2 cut(s) 588, 608
BstSCI CCNGG 3 cut(s) 565, 586, 606
BstSLI GKGCMC 1 cut(s) 335
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 191, 236
BstYI RGATCY 2 cut(s) 191, 236
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 1 cut(s) 616
BsuTUI ATCGAT 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 546
Cfr10I RCCGGY 2 cut(s) 544, 616
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 3 cut(s) 30, 47, 95
Csp6I GTAC 1 cut(s) 497
CviJI RGCY 6 cut(s) 56, 112, 505, 583, 616, 635
CviKI_1 RGCY 6 cut(s) 56, 112, 505, 583, 616, 635
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 4 cut(s) 108, 243, 313, 350
DpnI GATC 4 cut(s) 193, 238, 266, 326
DpnII GATC 4 cut(s) 191, 236, 264, 324
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 2 cut(s) 185, 426
EarI CTCTTC 2 cut(s) 185, 426
EciI GGCGGA 3 cut(s) 114, 294, 521
Eco57I CTGAAG 1 cut(s) 166
Eco81I CCTNAGG 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 586, 606
Esp3I CGTCTC 1 cut(s) 542
FaiI YATR 3 cut(s) 425, 465, 482
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 1 cut(s) 312
FspBI CTAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 616
HapII CCGG 5 cut(s) 502, 545, 567, 617, 636
HgaI GACGC 3 cut(s) 30, 47, 95
Hin1I GRCGYC 4 cut(s) 78, 87, 491, 518
HincII GTYRAC 2 cut(s) 76, 85
HindII GTYRAC 2 cut(s) 76, 85
HinfI GANTC 3 cut(s) 7, 132, 269
HpaII CCGG 5 cut(s) 502, 545, 567, 617, 636
HphI GGTGA 2 cut(s) 364, 631
Hpy166II GTNNAC 2 cut(s) 76, 85
Hpy188I TCNGA 5 cut(s) 12, 61, 191, 216, 264
Hpy188III TCNNGA 3 cut(s) 242, 380, 389
Hpy8I GTNNAC 2 cut(s) 76, 85
Hpy99I CGWCG 5 cut(s) 41, 46, 83, 523, 553
HpyAV CCTTC 3 cut(s) 86, 572, 613
HpyCH4III ACNGT 4 cut(s) 65, 404, 553, 594
HpyCH4IV ACGT 3 cut(s) 78, 491, 518
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 511
HpyF3I CTNAG 4 cut(s) 108, 243, 313, 350
HpySE526I ACGT 3 cut(s) 78, 491, 518
Hsp92I GRCGYC 4 cut(s) 78, 87, 491, 518
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 4 cut(s) 191, 236, 264, 324
LmnI GCTCC 1 cut(s) 176
LweI GCATC 3 cut(s) 94, 130, 195
MaeI CTAG 1 cut(s) 632
MaeII ACGT 3 cut(s) 78, 491, 518
MaeIII GTNAC 1 cut(s) 619
MalI GATC 4 cut(s) 193, 238, 266, 326
MboI GATC 4 cut(s) 191, 236, 264, 324
MboII GAAGA 5 cut(s) 16, 172, 331, 431, 443
MflI RGATCY 2 cut(s) 191, 236
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 2 cut(s) 365, 643
MluI ACGCGT 1 cut(s) 39
MlyI GAGTC 2 cut(s) 141, 278
MmeI TCCRAC 3 cut(s) 84, 423, 451
MnlI CCTC 8 cut(s) 67, 89, 157, 238, 380, 385, 427, 469
MreI CGCCGGCG 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 544
MseI TTAA 1 cut(s) 507
MspI CCGG 5 cut(s) 502, 545, 567, 617, 636
MspR9I CCNGG 3 cut(s) 567, 588, 608
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 2 cut(s) 588, 608
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 511
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 567
NdeII GATC 4 cut(s) 191, 236, 264, 324
NgoMIV GCCGGC 1 cut(s) 544
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 520
PfoI TCCNGGA 3 cut(s) 565, 586, 606
PleI GAGTC 2 cut(s) 140, 277
PpsI GAGTC 2 cut(s) 140, 277
Psp6I CCWGG 2 cut(s) 586, 606
PspGI CCWGG 2 cut(s) 586, 606
PspN4I GGNNCC 1 cut(s) 218
PsuI RGATCY 2 cut(s) 191, 236
PsyI GACNNNGTC 1 cut(s) 520
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 4 cut(s) 191, 236, 264, 324
SchI GAGTC 2 cut(s) 141, 278
ScrFI CCNGG 3 cut(s) 567, 588, 608
SduI GDGCHC 1 cut(s) 335
SetI ASST 6 cut(s) 81, 222, 314, 377, 494, 521
SfaNI GCATC 3 cut(s) 94, 130, 195
SgrAI CRCCGGYG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 365, 643
SsiI CCGC 5 cut(s) 99, 305, 487, 514, 532
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 565, 586, 606
TaaI ACNGT 4 cut(s) 65, 404, 553, 594
TaiI ACGT 3 cut(s) 81, 494, 521
TaqI TCGA 3 cut(s) 138, 267, 327
TasI AATT 2 cut(s) 365, 643
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseFI GTSAC 1 cut(s) 619
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 2 cut(s) 17, 497
TspGWI ACGGA 1 cut(s) 484
Tth111I GACNNNGTC 1 cut(s) 520
XspI CTAG 1 cut(s) 632
ZraI GACGTC 3 cut(s) 79, 492, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.