Rmu_co8096726.1_g000001

Ethylene-responsive protein kinase Le-CTR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8096726.1
OG0000118
Physical Location & Seq
Reverse (-)
43 .. 598
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8096726.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
attggggagaattccggcgacggcgtcggggctttgtatttgtacaaaaatgtgtataatttattgcccaagtccgtcgggaggctgaagcggctgaggacgttgaagtttttcgggaatgagattaatttgttctcttcgtcggagtttgggaacttggtgggattggaatgcttgcagctccggctatcgtcgccggcgtttgatggtctgccattgcataaattcaaaggcttgaaggagctggagctttcgaaagtgccttctcggtcctcggctataccgatactgagtgagattgctaggctcaactgtctcaccaagctctctgtttgttacttttctataagagcttatggtcttgggaacacttataaagttgtggtgtttaaaaaactaagcgccgtagagggaggcttaggtaggcttagcgaagagcaggatgacttcaaagtgtgcttgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 LRR_8 Pkinase

Protein Analysis

155

Amino Acids

17.11

Weight (kDa)

9.32

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AciI CCGC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 10, 224
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 4 cut(s) 106, 229, 238, 451
AluBI AGCT 5 cut(s) 181, 244, 250, 325, 353
AluI AGCT 5 cut(s) 181, 244, 250, 325, 353
Alw26I GTCTC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 2 cut(s) 10, 224
AseI ATTAAT 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 310
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 270
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 200
BceAI ACGGC 2 cut(s) 37, 389
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 405
BisI GCNGC 2 cut(s) 92, 179
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 2 cut(s) 93, 180
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 2 cut(s) 95, 418
Bpu1102I GCTNAGC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 86, 281
BseXI GCAGC 1 cut(s) 190
BsiSI CCGG 3 cut(s) 15, 184, 197
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 254
Bsp1407I TGTACA 1 cut(s) 42
Bsp1720I GCTNAGC 1 cut(s) 428
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 87, 282
BspQI GCTCTTC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 142, 429
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 176, 198, 461
BstDEI CTNAG 5 cut(s) 95, 290, 398, 418, 428
BstF5I GGATG 1 cut(s) 448
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 3 cut(s) 91, 184, 193
BstV1I GCAGC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 176, 198, 461
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 43
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 5 cut(s) 95, 290, 398, 418, 428
DraI TTTAAA 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 142, 429
EarI CTCTTC 2 cut(s) 142, 429
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 10
FaiI YATR 6 cut(s) 57, 222, 281, 347, 357, 375
Fnu4HI GCNGC 2 cut(s) 92, 179
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 2 cut(s) 92, 179
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 403
GluI GCNGC 2 cut(s) 92, 179
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 405
HapII CCGG 3 cut(s) 15, 184, 197
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HpaII CCGG 3 cut(s) 15, 184, 197
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 79, 115
Hpy99I CGWCG 5 cut(s) 23, 29, 80, 145, 196
HpyAV CCTTC 2 cut(s) 232, 273
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 178, 220
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 184, 193
HpyF3I CTNAG 5 cut(s) 95, 290, 398, 418, 428
HpySE526I ACGT 1 cut(s) 101
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 402
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 3 cut(s) 186, 241, 247
LpnPI CCDG 5 cut(s) 28, 197, 210, 230, 425
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 2 cut(s) 129, 446
MluCI AATT 4 cut(s) 10, 58, 127, 224
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 75, 90, 283, 403, 407
MreI CGCCGGCG 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 126, 390
MspI CCGG 3 cut(s) 15, 184, 197
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 91, 184, 193
NaeI GCCGGC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 254
NspV TTCGAA 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 429
PcsI WCGNNNNNNNCGW 2 cut(s) 197, 281
PctI GAATGC 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 110
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 93, 180
PshBI ATTAAT 1 cut(s) 126
PsiI TTATAA 1 cut(s) 375
PspPI GGNCC 1 cut(s) 270
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 126, 390
SatI GCNGC 2 cut(s) 92, 179
Sau96I GGNCC 1 cut(s) 270
SetI ASST 7 cut(s) 104, 183, 246, 252, 327, 355, 424
SfuI TTCGAA 1 cut(s) 254
SgrAI CRCCGGYG 1 cut(s) 196
SinI GGWCC 1 cut(s) 270
Sse9I AATT 4 cut(s) 10, 58, 127, 224
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 254
TaqII GACCGA 1 cut(s) 258
TasI AATT 4 cut(s) 10, 58, 127, 224
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 94
Tru1I TTAA 2 cut(s) 126, 390
Tru9I TTAA 2 cut(s) 126, 390
TseI GCWGC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 64
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 270
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 2 cut(s) 10, 224
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.