FvH4_4g30720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
30210531 .. 30211613
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30720.t1

Sequence Viewer

Length: 435 bp
ATGAACACCGTCATAAGCTTGTCCGTGAAGAGACATGATTTCTGCCAGGGTCGGTTACCAAAGAAACCTTCGGAGAAGCTTGCAAAGCTTGATGATCCACAACCGAGAGAGGTCAATGATACTTGTATGCCTTTTGACTTATGTTCTAGGCCTGTTCTGGTGCGGACATCCGCACTCGGCTTAAAGTGCGGACGTCCCTTCGTTCGCCACCGTACGACGTCGGCGAGGGCGCGCCTCCACCCCAACGGATTCCAGCAGCATCCCCGATCACTTTCCCTTCCCGGCGAGTCCGCTGAATTCCAGTTTTCCGGCGAGATCACCCAAAACTTTAAACAAAATCAATCTCGCCGGAAAACTGGAATTCGGCGGACTCGCCGGGGATGGAAAGTGGTCAAGGACGCTGCTGGAGTCCGCTGGGGTGGAGGCGCCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.25

Weight (kDa)

11.22

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 196, 221
AccB1I GGYRCC 1 cut(s) 425
AccII CGCG 1 cut(s) 232
AciI CCGC 6 cut(s) 163, 171, 189, 291, 367, 412
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 2 cut(s) 296, 360
AcyI GRCGYC 3 cut(s) 193, 218, 426
AfaI GTAC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 3 cut(s) 18, 79, 88
AluI AGCT 3 cut(s) 18, 79, 88
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 256, 401
ApoI RAATTY 2 cut(s) 296, 360
AscI GGCGCGCC 1 cut(s) 230
AspLEI GCGC 3 cut(s) 232, 234, 428
AsuC2I CCSGG 2 cut(s) 282, 377
AsuHPI GGTGA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 268, 388
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 2 cut(s) 282, 377
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 429
BisI GCNGC 2 cut(s) 257, 402
BlsI GCNGC 2 cut(s) 258, 403
Bme1390I CCNGG 3 cut(s) 47, 282, 377
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 3 cut(s) 47, 282, 377
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 426
BpuMI CCSGG 2 cut(s) 282, 377
BsaHI GRCGYC 3 cut(s) 193, 218, 426
BsaJI CCNNGG 2 cut(s) 46, 376
Bse1I ACTGG 2 cut(s) 301, 361
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 46, 376
BseGI GGATG 3 cut(s) 167, 259, 386
BseNI ACTGG 2 cut(s) 301, 361
BsePI GCGCGC 1 cut(s) 230
BseXI GCAGC 2 cut(s) 268, 388
BseYI CCCAGC 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 4 cut(s) 282, 309, 349, 376
BsiWI CGTACG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 94, 266, 315
BspACI CCGC 6 cut(s) 163, 171, 189, 291, 367, 412
BspANI GGCC 1 cut(s) 151
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 425
BsrI ACTGG 2 cut(s) 301, 361
BssECI CCNNGG 2 cut(s) 46, 376
BssHII GCGCGC 1 cut(s) 230
BssMI GATC 3 cut(s) 94, 266, 315
BssNI GRCGYC 3 cut(s) 193, 218, 426
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 10, 212
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 3 cut(s) 193, 218, 426
BstC8I GCNNGC 2 cut(s) 81, 232
BstEII GGTNACC 1 cut(s) 54
BstF5I GGATG 3 cut(s) 167, 259, 386
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 3 cut(s) 232, 234, 428
BstKTI GATC 3 cut(s) 97, 269, 318
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 94, 266, 315
BstMWI GCNNNNNNNGC 2 cut(s) 85, 186
BstNI CCWGG 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 45, 280, 375
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 268, 388
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 3 cut(s) 167, 259, 386
Cac8I GCNNGC 2 cut(s) 81, 232
CfoI GCGC 3 cut(s) 232, 234, 428
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 35
CviJI RGCY 5 cut(s) 18, 79, 88, 151, 180
CviKI_1 RGCY 5 cut(s) 18, 79, 88, 151, 180
CviQI GTAC 1 cut(s) 213
DinI GGCGCC 1 cut(s) 427
DpnI GATC 3 cut(s) 96, 268, 317
DpnII GATC 3 cut(s) 94, 266, 315
DraI TTTAAA 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 382
Eco147I AGGCCT 1 cut(s) 151
Eco91I GGTNACC 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 54
EcoRI GAATTC 2 cut(s) 296, 360
EcoRII CCWGG 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 14, 36, 128, 142
FaqI GGGAC 1 cut(s) 180
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 257, 402
FokI GGATG 3 cut(s) 154, 246, 393
Fsp4HI GCNGC 2 cut(s) 257, 402
FspBI CTAG 1 cut(s) 147
GlaI GCGC 3 cut(s) 231, 233, 427
GluI GCNGC 2 cut(s) 257, 402
GsaI CCCAGC 1 cut(s) 418
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 282, 309, 349, 376
HgaI GACGC 1 cut(s) 407
HhaI GCGC 3 cut(s) 232, 234, 428
Hin1I GRCGYC 3 cut(s) 193, 218, 426
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 3 cut(s) 230, 232, 426
HinP1I GCGC 3 cut(s) 230, 232, 426
HindIII AAGCTT 3 cut(s) 16, 77, 86
HinfI GANTC 4 cut(s) 249, 287, 370, 408
HpaII CCGG 4 cut(s) 282, 309, 349, 376
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 3 cut(s) 78, 208, 287
HpyCH4III ACNGT 2 cut(s) 10, 212
HpyCH4IV ACGT 2 cut(s) 193, 218
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 186
HpySE526I ACGT 2 cut(s) 193, 218
Hsp92I GRCGYC 3 cut(s) 193, 218, 426
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 3 cut(s) 230, 232, 426
KasI GGCGCC 1 cut(s) 425
Kzo9I GATC 3 cut(s) 94, 266, 315
Lsp1109I GCAGC 2 cut(s) 268, 388
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 193, 218
MaeIII GTNAC 1 cut(s) 54
MalI GATC 3 cut(s) 96, 268, 317
MboI GATC 3 cut(s) 94, 266, 315
MboII GAAGA 1 cut(s) 40
MluCI AATT 2 cut(s) 296, 360
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 3 cut(s) 296, 364, 417
MnlI CCTC 4 cut(s) 103, 219, 245, 416
MseI TTAA 3 cut(s) 182, 330, 433
MspA1I CMGCKG 2 cut(s) 293, 414
MspI CCGG 4 cut(s) 282, 309, 349, 376
MspR9I CCNGG 3 cut(s) 47, 282, 377
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 85, 186
NarI GGCGCC 1 cut(s) 426
NciI CCSGG 2 cut(s) 282, 377
NdeII GATC 3 cut(s) 94, 266, 315
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 427
NmeAIII GCCGAG 1 cut(s) 156
PalAI GGCGCGCC 1 cut(s) 230
PauI GCGCGC 1 cut(s) 230
PceI AGGCCT 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 221
PfeI GAWTC 1 cut(s) 249
Pfl23II CGTACG 1 cut(s) 212
PkrI GCNGC 2 cut(s) 258, 403
PleI GAGTC 3 cut(s) 295, 364, 416
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 3 cut(s) 295, 364, 416
Psp6I CCWGG 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 45
PspLI CGTACG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 427
PteI GCGCGC 1 cut(s) 230
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 3 cut(s) 182, 330, 433
SatI GCNGC 2 cut(s) 257, 402
Sau3AI GATC 3 cut(s) 94, 266, 315
SchI GAGTC 3 cut(s) 296, 364, 417
ScrFI CCNGG 3 cut(s) 47, 282, 377
SetI ASST 7 cut(s) 20, 70, 81, 90, 114, 196, 221
SfaNI GCATC 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 427
SgsI GGCGCGCC 1 cut(s) 230
Sse9I AATT 2 cut(s) 296, 360
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 6 cut(s) 163, 171, 189, 291, 367, 412
SspDI GGCGCC 1 cut(s) 425
SspMI CTAG 1 cut(s) 147
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 45, 280, 375
TaaI ACNGT 2 cut(s) 10, 212
TaiI ACGT 2 cut(s) 196, 221
TasI AATT 2 cut(s) 296, 360
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 3 cut(s) 182, 330, 433
Tru9I TTAA 3 cut(s) 182, 330, 433
TseI GCWGC 2 cut(s) 256, 401
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 13, 261
XapI RAATTY 2 cut(s) 296, 360
XspI CTAG 1 cut(s) 147
ZraI GACGTC 2 cut(s) 194, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.