FvH4_6g25082

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
19024462 .. 19026459
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25082.t1

Sequence Viewer

Length: 456 bp
ATGGGTGGAAGTGAAAACGAAGATGAGGAAGATAGTGAGGACGGTGAAGAGGAGGAGGGATCGGGGCTGGAGCAGAACGGAGATGGCTCAAGGAGGAGGCTCGAGGACGGCTCGAGGAGGCTGTGGAGGGCTCGAGGAGGCGGTGAGGTCGAATATGAAGCGGACGTCCGCAACTATGTTAAAGTGTGGACGCCGGCTCAAATCAACTCTAGTAGCTGCATATGGCAGCTCTTCTTCCTCCTCAGACGCCATTGGCGTATTACCATCAAGTTGAATGCCAAGGTGATCGTAGAAGAAGGTCCGGCGCCGGAAAAATTGCAGAAACTTGAAGAAGCTCAATCCCGGATTCAAAACTCATCACCGACGAGTCTGCCGGCGAGAAGAAGCTCCAAATGGAACTCTTGTTTGGAACTAGCAAGAACAACGAAGCAATCAGTGTCGCCGGAGTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

5.13

Isoelectric Point (pI)

92.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 3 cut(s) 141, 161, 169
AclWI GGATC 1 cut(s) 67
AcyI GRCGYC 4 cut(s) 165, 191, 247, 305
AgsI TTSAA 3 cut(s) 274, 329, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 216, 229, 335, 387
AluI AGCT 4 cut(s) 216, 229, 335, 387
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 3 cut(s) 101, 112, 132
ApeKI GCWGC 2 cut(s) 216, 226
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 4 cut(s) 56, 155, 295, 351
AvaI CYCGRG 3 cut(s) 101, 112, 132
AvaII GGWCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 203, 238
BccI CCATC 2 cut(s) 77, 272
BceAI ACGGC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BcnI CCSGG 1 cut(s) 343
BfaI CTAG 2 cut(s) 210, 413
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 2 cut(s) 217, 227
BlsI GCNGC 2 cut(s) 218, 228
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 3 cut(s) 101, 112, 132
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 343
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 343
BsaHI GRCGYC 4 cut(s) 165, 191, 247, 305
BsaJI CCNNGG 1 cut(s) 279
Bse118I RCCGGY 2 cut(s) 193, 373
BseDI CCNNGG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 256
BseRI GAGGAG 6 cut(s) 65, 68, 109, 130, 150, 230
BseXI GCAGC 2 cut(s) 203, 238
BshNI GGYRCC 1 cut(s) 304
BsiHKCI CYCGRG 3 cut(s) 101, 112, 132
BsiSI CCGG 6 cut(s) 194, 302, 308, 343, 374, 443
BsmI GAATGC 1 cut(s) 280
BsoBI CYCGRG 3 cut(s) 101, 112, 132
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 59, 285
BspACI CCGC 3 cut(s) 141, 161, 169
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 193, 373
BssAI RCCGGY 2 cut(s) 193, 373
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 59, 285
BssNI GRCGYC 4 cut(s) 165, 191, 247, 305
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 42, 236
BstACI GRCGYC 4 cut(s) 165, 191, 247, 305
BstC8I GCNNGC 2 cut(s) 195, 375
BstDEI CTNAG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 62, 288
BstMBI GATC 2 cut(s) 59, 285
BstSCI CCNGG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 203, 238
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 195, 375
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 2 cut(s) 193, 373
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 2 cut(s) 199, 255
DdeI CTNAG 1 cut(s) 242
DinI GGCGCC 1 cut(s) 306
DpnI GATC 2 cut(s) 61, 287
DpnII GATC 2 cut(s) 59, 285
Eam1104I CTCTTC 2 cut(s) 42, 236
EarI CTCTTC 2 cut(s) 42, 236
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 299
Eco88I CYCGRG 3 cut(s) 101, 112, 132
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 279
FaiI YATR 4 cut(s) 156, 177, 221, 223
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 217, 227
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 217, 227
FspBI CTAG 2 cut(s) 210, 413
GlaI GCGC 1 cut(s) 306
GluI GCNGC 2 cut(s) 217, 227
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 308
HapII CCGG 6 cut(s) 194, 302, 308, 343, 374, 443
HgaI GACGC 2 cut(s) 199, 255
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 4 cut(s) 165, 191, 247, 305
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 2 cut(s) 346, 367
HpaII CCGG 6 cut(s) 194, 302, 308, 343, 374, 443
HphI GGTGA 4 cut(s) 56, 155, 295, 351
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 219, 319
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 4 cut(s) 165, 191, 247, 305
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
KroI GCCGGC 2 cut(s) 193, 373
KroNI GCCGGC 2 cut(s) 195, 375
Kzo9I GATC 2 cut(s) 59, 285
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 70, 392
LpnPI CCDG 6 cut(s) 53, 207, 315, 321, 356, 387
Lsp1109I GCAGC 2 cut(s) 203, 238
MaeI CTAG 2 cut(s) 210, 413
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 61, 287
MboI GATC 2 cut(s) 59, 285
MboII GAAGA 8 cut(s) 32, 41, 59, 223, 226, 305, 341, 393
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 1 cut(s) 314
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 376
MroNI GCCGGC 2 cut(s) 193, 373
MseI TTAA 1 cut(s) 180
MspI CCGG 6 cut(s) 194, 302, 308, 343, 374, 443
MspR9I CCNGG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 280
NaeI GCCGGC 2 cut(s) 195, 375
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 343
NdeI CATATG 1 cut(s) 221
NdeII GATC 2 cut(s) 59, 285
NgoMIV GCCGGC 2 cut(s) 193, 373
NlaIV GGNNCC 1 cut(s) 306
PaeR7I CTCGAG 3 cut(s) 101, 112, 132
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 2 cut(s) 195, 375
PfeI GAWTC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 2 cut(s) 218, 228
PleI GAGTC 1 cut(s) 375
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 299
PspXI VCTCGAGB 3 cut(s) 101, 112, 132
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 217, 227
Sau3AI GATC 2 cut(s) 59, 285
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 133
SetI ASST 8 cut(s) 150, 168, 218, 231, 285, 301, 337, 389
SfoI GGCGCC 1 cut(s) 306
Sfr274I CTCGAG 3 cut(s) 101, 112, 132
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 3 cut(s) 101, 112, 132
SmlI CTYRAG 4 cut(s) 88, 101, 112, 132
SmoI CTYRAG 4 cut(s) 88, 101, 112, 132
Sse9I AATT 1 cut(s) 314
SsiI CCGC 3 cut(s) 141, 161, 169
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 2 cut(s) 210, 413
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 168
TaqI TCGA 4 cut(s) 102, 113, 133, 150
TasI AATT 1 cut(s) 314
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 441
TseI GCWGC 2 cut(s) 216, 226
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 299
XhoI CTCGAG 3 cut(s) 101, 112, 132
XspI CTAG 2 cut(s) 210, 413
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.