FvH4_4g16601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
20489844 .. 20490769
926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16601.t1

Sequence Viewer

Length: 534 bp
ATGTGCGGACGTCCGCACTGTTTTACGGTGTGGATTTCCGTCCGTTCGACACCGTACGGCGCCGCGCGAGGGCGCGCCTCCACCCCAGCGGACTCCAGCAGCTTCCCCGACCACTTTTCATCCCCGGCGAGTCCGCCGAATTCCAGTTTTCCGGCGAGATCAACTTTATTTGAAGTTTTGGGTGATCTCGCCGGAAATCTGGAAAAGAACGGACTCACCGGGGATGGAAAATGGTCAGGAAAGCTGCTGGAGTTCACTGGGGTGGAGGCGCGCCCTCGCGCGGCTCCGTATGCAGACCTCCTTTTCCTCTTTTGCTTTCGTCGTTCTCTCTCCGTCTCATCGATCTCTGCTTGGCTGTCTCTCGGTCTCACCTCTGCTTGGCTTTCTCTCCGACGCAGCAGTCCCTTCTTCTCTTCATTGAGTCTCTCCTTATTTAGGTTATCTTTGGAGTTCCAGTCGTGCGGTGCTTCGGGTTTGTGTCACCGACGCTTTTGGCTTCTTTCGTCTTCCAAAGTGAAATTAGTTCTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.25

Weight (kDa)

9.97

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 399
AatII GACGTC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
AciI CCGC 7 cut(s) 6, 14, 63, 89, 134, 281, 462
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 2 cut(s) 10, 60
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 4 cut(s) 69, 280, 378, 435
AgsI TTSAA 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 260
AluBI AGCT 2 cut(s) 102, 244
AluI AGCT 2 cut(s) 102, 244
Alw26I GTCTC 4 cut(s) 340, 363, 371, 428
ApeKI GCWGC 3 cut(s) 99, 244, 396
ApoI RAATTY 1 cut(s) 139
AscI GGCGCGCC 2 cut(s) 73, 269
AspLEI GCGC 7 cut(s) 62, 67, 75, 77, 271, 273, 281
AsuC2I CCSGG 2 cut(s) 125, 220
AsuHPI GGTGA 4 cut(s) 194, 208, 361, 473
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 111, 231, 408
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 125, 220
BcoDI GTCTC 4 cut(s) 340, 363, 371, 428
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 5 cut(s) 63, 100, 245, 282, 397
BlsI GCNGC 5 cut(s) 64, 101, 246, 283, 398
Bme1390I CCNGG 2 cut(s) 125, 220
BmiI GGNNCC 2 cut(s) 61, 285
BmrFI CCNGG 2 cut(s) 125, 220
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 79, 269
BpuMI CCSGG 2 cut(s) 125, 220
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 2 cut(s) 10, 60
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 123, 219
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 280, 378, 435
Bse1I ACTGG 3 cut(s) 144, 262, 454
BseCI ATCGAT 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 123, 219
BseGI GGATG 2 cut(s) 119, 229
BseLI CCNNNNNNNGG 4 cut(s) 69, 280, 378, 435
BseNI ACTGG 3 cut(s) 144, 262, 454
BsePI GCGCGC 2 cut(s) 73, 269
BseXI GCAGC 3 cut(s) 111, 231, 408
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 341
BsiSI CCGG 4 cut(s) 125, 152, 192, 219
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 4 cut(s) 69, 280, 378, 435
BsmAI GTCTC 4 cut(s) 340, 363, 371, 428
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 371
Bsp143I GATC 3 cut(s) 158, 184, 342
BspACI CCGC 7 cut(s) 6, 14, 63, 89, 134, 281, 462
BspDI ATCGAT 1 cut(s) 341
BspFNI CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
BspLI GGNNCC 2 cut(s) 61, 285
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 3 cut(s) 144, 262, 454
BssECI CCNNGG 2 cut(s) 123, 219
BssHII GCGCGC 2 cut(s) 73, 269
BssMI GATC 3 cut(s) 158, 184, 342
BssNI GRCGYC 2 cut(s) 10, 60
Bst4CI ACNGT 3 cut(s) 20, 28, 54
Bst6I CTCTTC 1 cut(s) 418
BstACI GRCGYC 2 cut(s) 10, 60
BstC8I GCNNGC 2 cut(s) 75, 271
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 119, 229
BstFNI CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 7 cut(s) 62, 67, 75, 77, 271, 273, 281
BstKTI GATC 3 cut(s) 161, 187, 345
BstMAI GTCTC 4 cut(s) 340, 363, 371, 428
BstMBI GATC 3 cut(s) 158, 184, 342
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 123, 218
BstUI CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
BstV1I GCAGC 3 cut(s) 111, 231, 408
BstV2I GAAGAC 1 cut(s) 498
Bsu15I ATCGAT 1 cut(s) 341
BsuTUI ATCGAT 1 cut(s) 341
BtsCI GGATG 2 cut(s) 119, 229
BtsIMutI CAGTG 2 cut(s) 16, 255
Cac8I GCNNGC 2 cut(s) 75, 271
CfoI GCGC 7 cut(s) 62, 67, 75, 77, 271, 273, 281
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 2 cut(s) 402, 495
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 6 cut(s) 102, 244, 284, 355, 382, 496
CviKI_1 RGCY 6 cut(s) 102, 244, 284, 355, 382, 496
CviQI GTAC 1 cut(s) 55
DinI GGCGCC 1 cut(s) 61
DpnI GATC 3 cut(s) 160, 186, 344
DpnII GATC 3 cut(s) 158, 184, 342
DrdI GACNNNNNNGTC 1 cut(s) 399
DseDI GACNNNNNNGTC 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 371
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 139
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 340
FaiI YATR 1 cut(s) 291
FaqI GGGAC 1 cut(s) 387
Fnu4HI GCNGC 5 cut(s) 63, 100, 245, 282, 397
FokI GGATG 2 cut(s) 106, 236
Fsp4HI GCNGC 5 cut(s) 63, 100, 245, 282, 397
GlaI GCGC 7 cut(s) 61, 66, 74, 76, 270, 272, 280
GluI GCNGC 5 cut(s) 63, 100, 245, 282, 397
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 2 cut(s) 79, 269
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 4 cut(s) 125, 152, 192, 219
HgaI GACGC 2 cut(s) 402, 495
HhaI GCGC 7 cut(s) 62, 67, 75, 77, 271, 273, 281
Hin1I GRCGYC 2 cut(s) 10, 60
Hin6I GCGC 7 cut(s) 60, 65, 73, 75, 269, 271, 279
HinP1I GCGC 7 cut(s) 60, 65, 73, 75, 269, 271, 279
HinfI GANTC 4 cut(s) 92, 130, 213, 421
HpaII CCGG 4 cut(s) 125, 152, 192, 219
HphI GGTGA 4 cut(s) 194, 208, 361, 473
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 392
Hpy188III TCNNGA 3 cut(s) 200, 237, 531
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 3 cut(s) 324, 396, 489
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 20, 28, 54
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 2 cut(s) 10, 60
HspAI GCGC 7 cut(s) 60, 65, 73, 75, 269, 271, 279
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 3 cut(s) 158, 184, 342
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 3 cut(s) 111, 231, 408
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 160, 186, 344
MboI GATC 3 cut(s) 158, 184, 342
MboII GAAGA 3 cut(s) 400, 405, 498
MluCI AATT 2 cut(s) 139, 518
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 4 cut(s) 86, 139, 207, 430
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 7 cut(s) 62, 88, 259, 285, 308, 317, 382
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 4 cut(s) 125, 152, 192, 219
MspR9I CCNGG 2 cut(s) 125, 220
MteI GCGCNGCGC 1 cut(s) 63
MvnI CGCG 6 cut(s) 65, 67, 75, 271, 279, 281
MwoI GCNNNNNNNGC 1 cut(s) 290
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 2 cut(s) 125, 220
NdeII GATC 3 cut(s) 158, 184, 342
NlaIV GGNNCC 2 cut(s) 61, 285
NmuCI GTSAC 1 cut(s) 479
OliI CACNNNNGTG 1 cut(s) 260
PalAI GGCGCGCC 2 cut(s) 73, 269
PauI GCGCGC 2 cut(s) 73, 269
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 5 cut(s) 64, 101, 246, 283, 398
PleI GAGTC 4 cut(s) 86, 138, 207, 429
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 4 cut(s) 86, 138, 207, 429
PspFI CCCAGC 1 cut(s) 85
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 61, 285
PteI GCGCGC 2 cut(s) 73, 269
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 260
SatI GCNGC 5 cut(s) 63, 100, 245, 282, 397
Sau3AI GATC 3 cut(s) 158, 184, 342
SchI GAGTC 4 cut(s) 86, 139, 207, 430
ScrFI CCNGG 2 cut(s) 125, 220
SetI ASST 6 cut(s) 13, 104, 246, 300, 374, 440
SfoI GGCGCC 1 cut(s) 61
SgsI GGCGCGCC 2 cut(s) 73, 269
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 2 cut(s) 139, 518
SsiI CCGC 7 cut(s) 6, 14, 63, 89, 134, 281, 462
SspDI GGCGCC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 123, 218
TaaI ACNGT 3 cut(s) 20, 28, 54
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 47, 341
TaqII GACCGA 1 cut(s) 353
TasI AATT 2 cut(s) 139, 518
TauI GCSGC 2 cut(s) 65, 284
TscAI CASTG 2 cut(s) 23, 262
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 3 cut(s) 99, 244, 396
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 108, 405
TspGWI ACGGA 5 cut(s) 28, 32, 225, 276, 322
TspRI CASTG 2 cut(s) 23, 262
XagI CCTNNNNNAGG 1 cut(s) 433
XapI RAATTY 1 cut(s) 139
ZraI GACGTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.