FvH4_6g20104

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
13557368 .. 13562492
5125 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20104.t1

Sequence Viewer

Length: 513 bp
ATGGCGCGCCTCCACCCCAGCAGCCTTCAGCAGCGTCCCCGACCACTTTTCCTCTCCGGCGAGTCCGTCGAATTCCAGTTTTCCTGCGAGATCACCCAAAACTTCATACAAAATCGATCTCGCCGGAAAACTGGAATTCGGCGGACTCGCCGGGGAGGGAAAGTGATCGGGGACGCTGCTGGAGGCTGCTGGGGTAGAGACGCACCCTCGTCGGCGCCGTACGGTGGCGAACAGAGGGACGTCCGCACTTTAAGGGCGTGCGGACGTCCTCCTCTGATTCGGACTCTGGATCGTCAACTCCATCGACTCCGAGTAATATTTCATGAGAAAATTCCAGTTATCGTAGTGGCCCTGGATGTTAGACAAGGTGAACCGTTCGAGAAAGTTGTGGTGCCTGTAAAAGGTTTCCCAAGTAAGGAAGCATATTGGGTCTCAGACAGTGAAGCAAAAGTAGTAAAGTATGATAAGAGTAAGCTAATTGGCCCCAACAAAGCTAATAAAGATGTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

10.39

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 243, 268
AccB1I GGYRCC 2 cut(s) 214, 391
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 142, 244, 261
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 3 cut(s) 71, 135, 330
AcuI CTGAAG 1 cut(s) 11
AcyI GRCGYC 3 cut(s) 215, 240, 265
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 224, 401, 415
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 2 cut(s) 475, 494
AluI AGCT 2 cut(s) 475, 494
Alw26I GTCTC 2 cut(s) 192, 436
AlwI GGATC 1 cut(s) 297
AoxI GGCC 2 cut(s) 348, 481
ApeKI GCWGC 4 cut(s) 21, 31, 176, 186
ApoI RAATTY 3 cut(s) 71, 135, 330
AscI GGCGCGCC 1 cut(s) 5
AspLEI GCGC 3 cut(s) 7, 9, 217
AspS9I GGNCC 2 cut(s) 349, 482
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 85, 380
BanI GGYRCC 2 cut(s) 214, 391
BbvI GCAGC 4 cut(s) 33, 43, 163, 173
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 192, 436
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 4 cut(s) 22, 32, 177, 187
BlsI GCNGC 4 cut(s) 23, 33, 178, 188
Bme1390I CCNGG 2 cut(s) 152, 353
BmgT120I GGNCC 2 cut(s) 349, 482
BmiI GGNNCC 3 cut(s) 216, 393, 484
BmrFI CCNGG 2 cut(s) 152, 353
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 115
BsaHI GRCGYC 3 cut(s) 215, 240, 265
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 151, 351
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 401, 415
Bse1I ACTGG 3 cut(s) 76, 136, 335
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 151, 351
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 224, 401, 415
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 3 cut(s) 76, 136, 335
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 4 cut(s) 33, 43, 163, 173
BseYI CCCAGC 2 cut(s) 17, 189
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 350, 483
BshNI GGYRCC 2 cut(s) 214, 391
BshVI ATCGAT 1 cut(s) 115
BsiSI CCGG 3 cut(s) 57, 124, 151
BsiWI CGTACG 1 cut(s) 219
BslFI GGGAC 3 cut(s) 21, 185, 251
BslI CCNNNNNNNGG 3 cut(s) 224, 401, 415
BsmAI GTCTC 2 cut(s) 192, 436
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 21, 185, 251
BsnI GGCC 2 cut(s) 350, 483
Bso31I GGTCTC 1 cut(s) 436
Bsp143I GATC 4 cut(s) 90, 116, 165, 289
BspACI CCGC 3 cut(s) 142, 244, 261
BspANI GGCC 2 cut(s) 350, 483
BspCNI CTCAG 1 cut(s) 446
BspDI ATCGAT 1 cut(s) 115
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 3 cut(s) 216, 393, 484
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 2 cut(s) 214, 391
BspTNI GGTCTC 1 cut(s) 436
BsrI ACTGG 3 cut(s) 76, 136, 335
BssECI CCNNGG 2 cut(s) 151, 351
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 90, 116, 165, 289
BssNI GRCGYC 3 cut(s) 215, 240, 265
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 224, 375, 440
BstACI GRCGYC 3 cut(s) 215, 240, 265
BstC8I GCNNGC 2 cut(s) 7, 259
BstDEI CTNAG 2 cut(s) 433, 510
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 3 cut(s) 7, 9, 217
BstKTI GATC 4 cut(s) 93, 119, 168, 292
BstMAI GTCTC 2 cut(s) 192, 436
BstMBI GATC 4 cut(s) 90, 116, 165, 289
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 150, 351
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 33, 43, 163, 173
Bsu15I ATCGAT 1 cut(s) 115
BsuRI GGCC 2 cut(s) 350, 483
BsuTUI ATCGAT 1 cut(s) 115
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 7, 259
CciI TCATGA 1 cut(s) 322
CfoI GCGC 3 cut(s) 7, 9, 217
Cfr13I GGNCC 2 cut(s) 349, 482
ClaI ATCGAT 1 cut(s) 115
CseI GACGC 3 cut(s) 23, 182, 209
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 24, 186, 350, 475, 483, 494
CviKI_1 RGCY 6 cut(s) 24, 186, 350, 475, 483, 494
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 433, 510
DinI GGCGCC 1 cut(s) 216
DpnI GATC 4 cut(s) 92, 118, 167, 291
DpnII GATC 4 cut(s) 90, 116, 165, 289
EciI GGCGGA 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRI GAATTC 2 cut(s) 71, 135
EcoRII CCWGG 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 1 cut(s) 326
FaiI YATR 4 cut(s) 107, 324, 424, 462
FaqI GGGAC 3 cut(s) 21, 185, 251
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 4 cut(s) 22, 32, 177, 187
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 22, 32, 177, 187
GlaI GCGC 3 cut(s) 6, 8, 216
GluI GCNGC 4 cut(s) 22, 32, 177, 187
GsaI CCCAGC 2 cut(s) 21, 193
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 2 cut(s) 350, 483
HapII CCGG 3 cut(s) 57, 124, 151
HgaI GACGC 3 cut(s) 23, 182, 209
HhaI GCGC 3 cut(s) 7, 9, 217
Hin1I GRCGYC 3 cut(s) 215, 240, 265
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 3 cut(s) 5, 7, 215
HinP1I GCGC 3 cut(s) 5, 7, 215
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 5 cut(s) 62, 145, 277, 283, 306
HpaII CCGG 3 cut(s) 57, 124, 151
HphI GGTGA 2 cut(s) 85, 380
Hpy166II GTNNAC 2 cut(s) 296, 371
Hpy188I TCNGA 4 cut(s) 276, 282, 311, 436
Hpy188III TCNNGA 3 cut(s) 287, 323, 379
Hpy8I GTNNAC 2 cut(s) 296, 371
Hpy99I CGWCG 2 cut(s) 71, 214
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 224, 375, 440
HpyCH4IV ACGT 2 cut(s) 240, 265
HpyF3I CTNAG 2 cut(s) 433, 510
HpySE526I ACGT 2 cut(s) 240, 265
Hsp92I GRCGYC 3 cut(s) 215, 240, 265
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 3 cut(s) 5, 7, 215
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 90, 116, 165, 289
Lsp1109I GCAGC 4 cut(s) 33, 43, 163, 173
MaeII ACGT 2 cut(s) 240, 265
MalI GATC 4 cut(s) 92, 118, 167, 291
MboI GATC 4 cut(s) 90, 116, 165, 289
MluCI AATT 4 cut(s) 71, 135, 330, 477
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 4 cut(s) 71, 139, 277, 300
MnlI CCTC 8 cut(s) 20, 62, 149, 176, 217, 228, 279, 282
MseI TTAA 1 cut(s) 251
MspI CCGG 3 cut(s) 57, 124, 151
MspR9I CCNGG 2 cut(s) 152, 353
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 7
NarI GGCGCC 1 cut(s) 215
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 90, 116, 165, 289
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 3 cut(s) 216, 393, 484
PagI TCATGA 1 cut(s) 322
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 1 cut(s) 277
Pfl23II CGTACG 1 cut(s) 219
PkrI GCNGC 4 cut(s) 23, 33, 178, 188
PleI GAGTC 4 cut(s) 70, 139, 277, 300
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 4 cut(s) 70, 139, 277, 300
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 2 cut(s) 17, 189
PspGI CCWGG 1 cut(s) 351
PspLI CGTACG 1 cut(s) 219
PspN4I GGNNCC 3 cut(s) 216, 393, 484
PspPI GGNCC 2 cut(s) 349, 482
PteI GCGCGC 1 cut(s) 5
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 4 cut(s) 22, 32, 177, 187
Sau3AI GATC 4 cut(s) 90, 116, 165, 289
Sau96I GGNCC 2 cut(s) 349, 482
SchI GAGTC 4 cut(s) 71, 139, 277, 300
ScrFI CCNGG 2 cut(s) 152, 353
SetI ASST 6 cut(s) 243, 268, 370, 406, 477, 496
SfoI GGCGCC 1 cut(s) 216
SgsI GGCGCGCC 1 cut(s) 5
Sse9I AATT 4 cut(s) 71, 135, 330, 477
SsiI CCGC 3 cut(s) 142, 244, 261
SspDI GGCGCC 1 cut(s) 214
SspI AATATT 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 150, 351
TaaI ACNGT 3 cut(s) 224, 375, 440
TaiI ACGT 2 cut(s) 243, 268
TaqI TCGA 4 cut(s) 69, 115, 304, 378
TasI AATT 4 cut(s) 71, 135, 330, 477
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 445
TseI GCWGC 4 cut(s) 21, 31, 176, 186
TspDTI ATGAA 2 cut(s) 94, 311
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 3 cut(s) 71, 135, 330
ZraI GACGTC 2 cut(s) 241, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.