FvH4_5g05681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
3371727 .. 3378108
6382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05681.t2

Sequence Viewer

Length: 396 bp
ATGTTTTCCCCTGGGCCCTTCGTTTTAAATTGCCCAGTCTGCAGAGTTCGAGTTGGATCTAGTAGGAGACGAGGCATAGTCACCCGCTTTTCGGCCAGTTTTCATCATAAATTTTCCTTGGAGGTGGTCCCCGCACGACTTACTCTAGGTTTCAGGGTGAAATTCGGGGTGGGTCGTGTCAACGCGCCTCCACCCGAGCGGACTCCAGCGGCGTCCCCGATCATTTTCTCTTCTCGGCGAGATCGATTTGAAGGTTTGGGTAGTAATCTCCACCCAAAGCTTCAGAGAAGATCGATTTCGCAGGAAAACTGGAATTCGACGGACTCGTTGGGGAGAGAAAGTGATCGGGGACGCCTCTGGAGTCCGCTCAGGTGGAGGAGGGACGTCCGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

11.92

Isoelectric Point (pI)

76.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccBSI CCGCTC 2 cut(s) 199, 367
AccII CGCG 1 cut(s) 185
AciI CCGC 6 cut(s) 85, 132, 199, 209, 365, 388
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 3 cut(s) 110, 161, 313
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 3 cut(s) 212, 352, 384
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 14, 93
ApaI GGGCCC 1 cut(s) 18
ApoI RAATTY 3 cut(s) 110, 161, 313
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 3 cut(s) 14, 15, 127
AsuHPI GGTGA 2 cut(s) 73, 169
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 60, 146
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 14, 15, 127
BmiI GGNNCC 2 cut(s) 16, 129
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 189, 379
Bpu10I CCTNAGC 1 cut(s) 368
Bsa29I ATCGAT 2 cut(s) 244, 293
BsaHI GRCGYC 3 cut(s) 212, 352, 384
BsaJI CCNNGG 3 cut(s) 10, 11, 117
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 35, 96, 314
BseBI CCWGG 1 cut(s) 12
BseCI ATCGAT 2 cut(s) 244, 293
BseDI CCNNGG 3 cut(s) 10, 11, 117
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 382
BseNI ACTGG 3 cut(s) 35, 96, 314
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 16, 95
BshVI ATCGAT 2 cut(s) 244, 293
BsiHKCI CYCGRG 1 cut(s) 194
BslFI GGGAC 3 cut(s) 113, 199, 363
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 3 cut(s) 113, 199, 363
BsnI GGCC 2 cut(s) 16, 95
BsoBI CYCGRG 1 cut(s) 194
Bsp120I GGGCCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 5 cut(s) 56, 219, 241, 290, 343
BspACI CCGC 6 cut(s) 85, 132, 199, 209, 365, 388
BspANI GGCC 2 cut(s) 16, 95
BspCNI CTCAG 1 cut(s) 381
BspDI ATCGAT 2 cut(s) 244, 293
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 16, 129
BspMAI CTGCAG 1 cut(s) 44
BspPI GGATC 1 cut(s) 64
BsrBI CCGCTC 2 cut(s) 199, 367
BsrI ACTGG 3 cut(s) 35, 96, 314
BssECI CCNNGG 3 cut(s) 10, 11, 117
BssMI GATC 5 cut(s) 56, 219, 241, 290, 343
BssNI GRCGYC 3 cut(s) 212, 352, 384
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 235
BstACI GRCGYC 3 cut(s) 212, 352, 384
BstDEI CTNAG 1 cut(s) 368
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 59, 222, 244, 293, 346
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 5 cut(s) 56, 219, 241, 290, 343
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
Bsu15I ATCGAT 2 cut(s) 244, 293
BsuRI GGCC 2 cut(s) 16, 95
BsuTUI ATCGAT 2 cut(s) 244, 293
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 3 cut(s) 14, 15, 127
ClaI ATCGAT 2 cut(s) 244, 293
CseI GACGC 2 cut(s) 201, 360
CviJI RGCY 3 cut(s) 16, 95, 280
CviKI_1 RGCY 3 cut(s) 16, 95, 280
DdeI CTNAG 1 cut(s) 368
DpnI GATC 5 cut(s) 58, 221, 243, 292, 345
DpnII GATC 5 cut(s) 56, 219, 241, 290, 343
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
EciI GGCGGA 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 61
FaiI YATR 2 cut(s) 77, 108
FaqI GGGAC 3 cut(s) 113, 199, 363
FauI CCCGC 2 cut(s) 92, 139
Fnu4HI GCNGC 1 cut(s) 210
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 60, 146
GlaI GCGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 189, 379
HaeIII GGCC 2 cut(s) 16, 95
HgaI GACGC 2 cut(s) 201, 360
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 3 cut(s) 212, 352, 384
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 202, 323, 361
HphI GGTGA 2 cut(s) 73, 169
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 285, 395
Hpy188III TCNNGA 1 cut(s) 358
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 28, 245
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 3 cut(s) 212, 352, 384
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 5 cut(s) 56, 219, 241, 290, 343
LpnPI CCDG 9 cut(s) 24, 48, 109, 139, 219, 287, 295, 343, 355
MaeI CTAG 2 cut(s) 60, 146
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 79
MalI GATC 5 cut(s) 58, 221, 243, 292, 345
MbiI CCGCTC 2 cut(s) 199, 367
MboI GATC 5 cut(s) 56, 219, 241, 290, 343
MboII GAAGA 2 cut(s) 222, 300
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 28, 110, 161, 313
MlyI GAGTC 3 cut(s) 196, 317, 370
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 6 cut(s) 65, 115, 198, 365, 369, 372
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 5 cut(s) 56, 219, 241, 290, 343
NlaIV GGNNCC 2 cut(s) 16, 129
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 241, 323
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 3 cut(s) 196, 317, 369
PpsI GAGTC 3 cut(s) 196, 317, 369
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 16, 129
PspOMI GGGCCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 14, 15, 127
PstI CTGCAG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 56
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 5 cut(s) 56, 219, 241, 290, 343
Sau96I GGNCC 3 cut(s) 14, 15, 127
SchI GAGTC 3 cut(s) 196, 317, 370
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 18
SetI ASST 6 cut(s) 126, 151, 256, 282, 374, 387
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 127
Sse9I AATT 4 cut(s) 28, 110, 161, 313
SsiI CCGC 6 cut(s) 85, 132, 199, 209, 365, 388
SspMI CTAG 2 cut(s) 60, 146
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 49, 244, 293, 317
TasI AATT 4 cut(s) 28, 110, 161, 313
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 3 cut(s) 110, 161, 313
XspI CTAG 2 cut(s) 60, 146
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.