FvH4_5g09381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
5423623 .. 5424850
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09381.t1

Sequence Viewer

Length: 306 bp
ATGGGTAAAAGAACATATTCAGCTCTAAGGTGTCGACGATGCCATTTCTTCTTGTCGGACGGACAACAGACCTTGATATTGAGCTTCCTTTTGCCAGTGGACTCGCCGGCTACAAGTTTGCAACCAACTTTGATAGGTTTTGAAGTTTTCAGTGAGGTTGCTGCCCAGAGCTCTGATCCTGATCTCCTTGACCTTCTTCTTAATGTCAACGCCGTCCTGGAGGCCTCTGGTGTTCATCCGGCAAGAGAAGTGCCGCCGTCGACGCCTGAAGGTGGAGAAATCTGTTTCCGAGACGTCCGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.03

Weight (kDa)

4.94

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 34, 260
AciI CCGC 2 cut(s) 254, 298
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 263, 294
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 23, 84, 171
AluI AGCT 3 cut(s) 23, 84, 171
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 197, 241
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 285
BisI GCNGC 2 cut(s) 162, 254
BlsI GCNGC 2 cut(s) 163, 255
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 180
BsaHI GRCGYC 2 cut(s) 263, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 2 cut(s) 107, 239
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 175, 181
BspACI CCGC 2 cut(s) 254, 298
BspANI GGCC 1 cut(s) 224
BspPI GGATC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 106
BssMI GATC 2 cut(s) 175, 181
BssNI GRCGYC 2 cut(s) 263, 294
Bst2UI CCWGG 1 cut(s) 218
BstACI GRCGYC 2 cut(s) 263, 294
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 2 cut(s) 178, 184
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 2 cut(s) 175, 181
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 102, 157
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 106
CseI GACGC 1 cut(s) 271
CviJI RGCY 5 cut(s) 23, 84, 110, 171, 224
CviKI_1 RGCY 5 cut(s) 23, 84, 110, 171, 224
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 177, 183
DpnII GATC 2 cut(s) 175, 181
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 285
FaiI YATR 1 cut(s) 16
FblI GTMKAC 2 cut(s) 34, 260
Fnu4HI GCNGC 2 cut(s) 162, 254
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 162, 254
GluI GCNGC 2 cut(s) 162, 254
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 107, 239
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 2 cut(s) 263, 294
HincII GTYRAC 3 cut(s) 35, 208, 261
HindII GTYRAC 3 cut(s) 35, 208, 261
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 107, 239
Hpy166II GTNNAC 4 cut(s) 35, 100, 208, 261
Hpy188I TCNGA 4 cut(s) 58, 175, 290, 305
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 4 cut(s) 35, 100, 208, 261
Hpy99I CGWCG 3 cut(s) 39, 262, 265
HpyAV CCTTC 2 cut(s) 203, 263
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 263, 294
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Kzo9I GATC 2 cut(s) 175, 181
LpnPI CCDG 9 cut(s) 108, 120, 179, 192, 203, 213, 230, 252, 279
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 29
MaeII ACGT 1 cut(s) 294
MalI GATC 2 cut(s) 177, 183
MboI GATC 2 cut(s) 175, 181
MboII GAAGA 2 cut(s) 40, 188
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 3 cut(s) 148, 214, 235
MroNI GCCGGC 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 1 cut(s) 201
MspI CCGG 2 cut(s) 107, 239
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 262
NaeI GCCGGC 1 cut(s) 108
NdeII GATC 2 cut(s) 175, 181
NgoMIV GCCGGC 1 cut(s) 106
PceI AGGCCT 1 cut(s) 224
PdiI GCCGGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 2 cut(s) 163, 255
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 173
SalI GTCGAC 2 cut(s) 33, 259
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 162, 254
Sau3AI GATC 2 cut(s) 175, 181
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 29
SgrDI CGTCGACG 1 cut(s) 259
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 2 cut(s) 254, 298
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 34, 260
TauI GCSGC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 102, 157
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 2 cut(s) 102, 157
XmiI GTMKAC 2 cut(s) 34, 260
XmnI GAANNNNTTC 1 cut(s) 16
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.