Rroxscaffold_3G00236310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000118
Physical Location & Seq
Forward (+)
23511566 .. 23512021
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236310.1

Sequence Viewer

Length: 456 bp
ATGCTTTCTCGGCGACCGAGTGCCGAAGGCGGCGCGGCTCTTGCCGGACGGAGGCTAGGCCTCGATGTTGAGCTTCTTTTTGCCGGTGGACTCGCCGGCTACCGCTTGCAGTCCACCTTGATCGGCTTGAAGTTTTGGGTGAGGTCGATGCCTAGAAACTTCAACCTCGATCTCCTTGGCCTTCATCTTCATGGTAAAGCCGTACGGGATGCCCCCGGCCTCTCGTCCGCAAGAGCCGAGCGGTCGTCGGCGCCTAATTGCGGGCACTTTTATGCCACCGCGTACGTCCGCCTCGGAAGGGCCTTTATATATAGAGTTAATTACCGTTTACTCCCTATACTTATAGAGTTTCATCGTTTCGTCCCCGACCTTCGAATTTCACCTAAAAAGTCCCCGAACTCTCAATTTCCTCCCAATTCGTCCCCGCCGTCAAGCTCTTTCCAAATTATCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

11.24

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 241
AccII CGCG 2 cut(s) 35, 281
AciI CCGC 9 cut(s) 30, 35, 103, 228, 241, 261, 279, 289, 425
AcsI RAATTY 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 2 cut(s) 204, 284
AfiI CCNNNNNNNGG 3 cut(s) 51, 260, 298
AgsI TTSAA 2 cut(s) 130, 163
AluBI AGCT 2 cut(s) 73, 435
AluI AGCT 2 cut(s) 73, 435
AoxI GGCC 4 cut(s) 58, 178, 217, 300
ApoI RAATTY 1 cut(s) 375
AspLEI GCGC 2 cut(s) 35, 253
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 151, 372
AsuII TTCGAA 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 250
BceAI ACGGC 2 cut(s) 185, 412
BcnI CCSGG 1 cut(s) 216
BfaI CTAG 2 cut(s) 56, 153
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 2 cut(s) 31, 36
BlsI GCNGC 2 cut(s) 32, 37
Bme1390I CCNGG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 138, 199
Bpu14I TTCGAA 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 175, 214, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 260, 298
Bse118I RCCGGY 2 cut(s) 83, 95
BseDI CCNNGG 3 cut(s) 175, 214, 292
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 51, 260, 298
BseSI GKGCMC 1 cut(s) 267
Bsh1236I CGCG 2 cut(s) 35, 281
Bsh1285I CGRYCG 2 cut(s) 17, 245
BshFI GGCC 4 cut(s) 60, 180, 219, 302
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 2 cut(s) 17, 245
BsiSI CCGG 4 cut(s) 45, 84, 96, 216
BsiWI CGTACG 2 cut(s) 202, 282
BslFI GGGAC 3 cut(s) 347, 376, 406
BslI CCNNNNNNNGG 3 cut(s) 51, 260, 298
BsmFI GGGAC 3 cut(s) 347, 376, 406
BsnI GGCC 4 cut(s) 60, 180, 219, 302
Bsp119I TTCGAA 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 120, 169
BspACI CCGC 9 cut(s) 30, 35, 103, 228, 241, 261, 279, 289, 425
BspANI GGCC 4 cut(s) 60, 180, 219, 302
BspFNI CGCG 2 cut(s) 35, 281
BspLI GGNNCC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 250
BsrBI CCGCTC 1 cut(s) 241
BsrFI RCCGGY 2 cut(s) 83, 95
BssAI RCCGGY 2 cut(s) 83, 95
BssECI CCNNGG 3 cut(s) 175, 214, 292
BssMI GATC 2 cut(s) 120, 169
BssNI GRCGYC 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 3 cut(s) 97, 107, 263
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 2 cut(s) 35, 281
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 35, 253
BstKTI GATC 2 cut(s) 123, 172
BstMBI GATC 2 cut(s) 120, 169
BstMCI CGRYCG 2 cut(s) 17, 245
BstMWI GCNNNNNNNGC 2 cut(s) 10, 41
BstSCI CCNGG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 2 cut(s) 35, 281
BsuRI GGCC 4 cut(s) 60, 180, 219, 302
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 97, 107, 263
CfoI GCGC 2 cut(s) 35, 253
Cfr10I RCCGGY 2 cut(s) 83, 95
Cfr13I GGNCC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 203, 283
CviAII CATG 1 cut(s) 191
CviQI GTAC 2 cut(s) 203, 283
DinI GGCGCC 1 cut(s) 252
DpnI GATC 2 cut(s) 122, 171
DpnII GATC 2 cut(s) 120, 169
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 194
FaiI YATR 7 cut(s) 192, 273, 308, 310, 312, 338, 344
FaqI GGGAC 3 cut(s) 347, 376, 406
FatI CATG 1 cut(s) 190
FauI CCCGC 2 cut(s) 254, 432
Fnu4HI GCNGC 2 cut(s) 31, 36
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 31, 36
FspBI CTAG 2 cut(s) 56, 153
GlaI GCGC 2 cut(s) 34, 252
GluI GCNGC 2 cut(s) 31, 36
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 4 cut(s) 60, 180, 219, 302
HapII CCGG 4 cut(s) 45, 84, 96, 216
HhaI GCGC 2 cut(s) 35, 253
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 2 cut(s) 33, 251
HinP1I GCGC 2 cut(s) 33, 251
HinfI GANTC 1 cut(s) 90
HpaII CCGG 4 cut(s) 45, 84, 96, 216
HphI GGTGA 2 cut(s) 151, 372
Hpy166II GTNNAC 3 cut(s) 89, 114, 329
Hpy188I TCNGA 1 cut(s) 296
Hpy8I GTNNAC 3 cut(s) 89, 114, 329
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 20, 191, 291, 380
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 41
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 2 cut(s) 33, 251
KasI GGCGCC 1 cut(s) 250
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 2 cut(s) 120, 169
LpnPI CCDG 4 cut(s) 58, 97, 109, 229
LweI GCATC 2 cut(s) 138, 199
MaeI CTAG 2 cut(s) 56, 153
MaeII ACGT 1 cut(s) 285
MalI GATC 2 cut(s) 122, 171
MbiI CCGCTC 1 cut(s) 241
MboI GATC 2 cut(s) 120, 169
MboII GAAGA 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 6 cut(s) 256, 319, 375, 404, 415, 444
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 7 cut(s) 45, 71, 135, 176, 230, 302, 420
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 2 cut(s) 318, 454
MslI CAYNNNNRTG 2 cut(s) 189, 270
MspI CCGG 4 cut(s) 45, 84, 96, 216
MspR9I CCNGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 35, 281
MwoI GCNNNNNNNGC 2 cut(s) 10, 41
NaeI GCCGGC 1 cut(s) 97
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 1 cut(s) 216
NdeII GATC 2 cut(s) 120, 169
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 262
NspV TTCGAA 1 cut(s) 373
PceI AGGCCT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 97
Pfl23II CGTACG 2 cut(s) 202, 282
PkrI GCNGC 2 cut(s) 32, 37
PleI GAGTC 1 cut(s) 84
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 84
PspLI CGTACG 2 cut(s) 202, 282
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 300
RsaI GTAC 2 cut(s) 204, 284
RsaNI GTAC 2 cut(s) 203, 283
RseI CAYNNNNRTG 2 cut(s) 189, 270
SaqAI TTAA 2 cut(s) 318, 454
SatI GCNGC 2 cut(s) 31, 36
Sau3AI GATC 2 cut(s) 120, 169
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 75, 119, 146, 168, 288, 372, 385, 437
SfaNI GCATC 2 cut(s) 138, 199
SfoI GGCGCC 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 373
SmiMI CAYNNNNRTG 2 cut(s) 189, 270
Sse9I AATT 6 cut(s) 256, 319, 375, 404, 415, 444
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 9 cut(s) 30, 35, 103, 228, 241, 261, 279, 289, 425
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 2 cut(s) 56, 153
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 63, 146, 168, 373
TaqII GACCGA 1 cut(s) 31
TasI AATT 6 cut(s) 256, 319, 375, 404, 415, 444
TauI GCSGC 2 cut(s) 33, 38
Tru1I TTAA 2 cut(s) 318, 454
Tru9I TTAA 2 cut(s) 318, 454
TspDTI ATGAA 3 cut(s) 173, 179, 341
TspGWI ACGGA 2 cut(s) 64, 440
XapI RAATTY 1 cut(s) 375
XspI CTAG 2 cut(s) 56, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.