FvH4_6g21261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
14812869 .. 14819377
6509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21261.t1

Sequence Viewer

Length: 744 bp
ATGACTCCAGCGCTCTCCCTAAACTCTAGCCTCCCCGGTTATGGGATCCTAGCAATTGTCTTTACATCTCCACTGCAGCTTTTGTCTAGCGGCAACCCAATCGAATCGAATCTGCCTCTTAGTCATATTGGCGCACCTAACGACCAAGGCTTCCTGATTTCTCATCCAAAAGCACATCTGCCTCTAGTCGCCGCTTTGAGAGATGGGATATATAATAATTCTATGGACTGGTCGGAGATGCGATCTTTGAGCAATGTCGATGCTGGTGCAACTATGAAGCAACTCTCAAAGTTGCAAACTGCGAGAGTAATGGTTTTGATGCCAGCGGTGAACCTCAAATTGGATGGGTTGCTGATGAAACCTGAAACCACGGGAAAGAAAGTCTGGTTTAGGATGGCTATATTTGATCAGGGTCGAGGTAGACTCGCACGTCTTCGACACCGGGAGAAGGCAGGGCTGTGCCGCCGGATTGAAGGGTGCGGGTTTGGGTTCGTAAGGTGTTGTAGCGGGCTGGGTTCACTGCTAGTGGATGGGATTGAAGGAGATTCGGATCATCGGCGTTCGGGGTTGGACAGGGGCGACGCAAAACTGGAACTCGGCGGACTCGTCGGGGAGATCAGGGACGCCTCTGGTGTCCGCTCGGGTGGAGGCGCGCCGTCGTTGGCGCCGGACGGTAGAGAACGGAGGAACGTCCGCACTTTAAGGGCGTGCGGGCGTCCGTCTCTGATCCGGACTGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

26.62

Weight (kDa)

9.79

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 421
AccII CGCG 1 cut(s) 653
AccIII TCCGGA 1 cut(s) 729
AclWI GGATC 4 cut(s) 40, 53, 558, 721
AcyI GRCGYC 3 cut(s) 624, 665, 715
AfeI AGCGCT 1 cut(s) 12
AfiI CCNNNNNNNGG 4 cut(s) 41, 42, 340, 448
AgsI TTSAA 2 cut(s) 473, 539
AjiI CACGTC 1 cut(s) 431
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 4 cut(s) 40, 53, 558, 721
Ama87I CYCGRG 1 cut(s) 640
Aor13HI TCCGGA 1 cut(s) 729
Aor51HI AGCGCT 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 76
AscI GGCGCGCC 1 cut(s) 651
AspLEI GCGC 5 cut(s) 13, 134, 653, 655, 667
AsuC2I CCSGG 2 cut(s) 36, 443
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 640
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 88
BccI CCATC 4 cut(s) 197, 338, 388, 524
BceAI ACGGC 1 cut(s) 640
BcgI CGANNNNNNTGC 4 cut(s) 82, 116, 248, 282
BclI TGATCA 1 cut(s) 406
BcnI CCSGG 2 cut(s) 36, 443
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 5 cut(s) 27, 50, 87, 185, 524
BfmI CTRYAG 1 cut(s) 74
BfoI RGCGCY 2 cut(s) 14, 668
BisI GCNGC 4 cut(s) 77, 91, 192, 463
BlsI GCNGC 4 cut(s) 78, 92, 193, 464
Bme1390I CCNGG 2 cut(s) 36, 443
BmeT110I CYCGRG 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 47, 666
BmrFI CCNGG 2 cut(s) 36, 443
BmsI GCATC 3 cut(s) 228, 250, 309
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpuMI CCSGG 2 cut(s) 36, 443
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 3 cut(s) 624, 665, 715
BsaJI CCNNGG 3 cut(s) 34, 145, 369
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 42, 340, 448
Bse1I ACTGG 2 cut(s) 233, 594
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 549
BseAI TCCGGA 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 34, 145, 369
BseGI GGATG 4 cut(s) 163, 349, 399, 535
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 41, 42, 340, 448
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 233, 594
BsePI GCGCGC 1 cut(s) 651
BseXI GCAGC 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 653
BshNI GGYRCC 1 cut(s) 664
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 5 cut(s) 36, 442, 466, 668, 730
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 4 cut(s) 41, 42, 340, 448
BsmAI GTCTC 1 cut(s) 726
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 635
BsoBI CYCGRG 1 cut(s) 640
Bsp13I TCCGGA 1 cut(s) 729
Bsp143I GATC 6 cut(s) 45, 242, 406, 550, 615, 726
BspEI TCCGGA 1 cut(s) 729
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 2 cut(s) 47, 666
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 4 cut(s) 40, 53, 558, 721
BspT107I GGYRCC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 233, 594
BssECI CCNNGG 3 cut(s) 34, 145, 369
BssHII GCGCGC 1 cut(s) 651
BssMI GATC 6 cut(s) 45, 242, 406, 550, 615, 726
BssNI GRCGYC 3 cut(s) 624, 665, 715
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 674
BstACI GRCGYC 3 cut(s) 624, 665, 715
BstC8I GCNNGC 5 cut(s) 324, 509, 653, 709, 713
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 163, 349, 399, 535
BstFNI CGCG 1 cut(s) 653
BstH2I RGCGCY 2 cut(s) 14, 668
BstHHI GCGC 5 cut(s) 13, 134, 653, 655, 667
BstKTI GATC 6 cut(s) 48, 245, 409, 553, 618, 729
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 6 cut(s) 45, 242, 406, 550, 615, 726
BstSCI CCNGG 2 cut(s) 34, 441
BstSFI CTRYAG 1 cut(s) 74
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 4 cut(s) 163, 349, 399, 535
BtsI GCAGTG 2 cut(s) 71, 518
BtsIMutI CAGTG 2 cut(s) 71, 518
Cac8I GCNNGC 5 cut(s) 324, 509, 653, 709, 713
CfoI GCGC 5 cut(s) 13, 134, 653, 655, 667
CseI GACGC 3 cut(s) 590, 632, 704
CviJI RGCY 6 cut(s) 30, 79, 150, 398, 457, 511
CviKI_1 RGCY 6 cut(s) 30, 79, 150, 398, 457, 511
DdeI CTNAG 1 cut(s) 119
DinI GGCGCC 1 cut(s) 666
DpnI GATC 6 cut(s) 47, 244, 408, 552, 617, 728
DpnII GATC 6 cut(s) 45, 242, 406, 550, 615, 726
DrdI GACNNNNNNGTC 1 cut(s) 429
DseDI GACNNNNNNGTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 640
EcoT14I CCWWGG 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 666
EheI GGCGCC 1 cut(s) 666
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 726
FaiI YATR 7 cut(s) 42, 126, 211, 213, 224, 275, 401
FaqI GGGAC 1 cut(s) 635
FauI CCCGC 3 cut(s) 473, 500, 704
FbaI TGATCA 1 cut(s) 406
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 77, 91, 192, 463
FokI GGATG 4 cut(s) 150, 356, 406, 542
Fsp4HI GCNGC 4 cut(s) 77, 91, 192, 463
FspBI CTAG 5 cut(s) 27, 50, 87, 185, 524
GlaI GCGC 5 cut(s) 12, 133, 652, 654, 666
GluI GCNGC 4 cut(s) 77, 91, 192, 463
GsaI CCCAGC 1 cut(s) 515
HaeII RGCGCY 2 cut(s) 14, 668
HapII CCGG 5 cut(s) 36, 442, 466, 668, 730
HgaI GACGC 3 cut(s) 590, 632, 704
HhaI GCGC 5 cut(s) 13, 134, 653, 655, 667
Hin1I GRCGYC 3 cut(s) 624, 665, 715
Hin6I GCGC 5 cut(s) 11, 132, 651, 653, 665
HinP1I GCGC 5 cut(s) 11, 132, 651, 653, 665
HinfI GANTC 6 cut(s) 4, 104, 109, 423, 545, 603
HpaII CCGG 5 cut(s) 36, 442, 466, 668, 730
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 3 cut(s) 331, 422, 518
Hpy188I TCNGA 3 cut(s) 235, 550, 726
Hpy188III TCNNGA 2 cut(s) 154, 730
Hpy8I GTNNAC 3 cut(s) 331, 422, 518
Hpy99I CGWCG 3 cut(s) 584, 611, 661
HpyAV CCTTC 3 cut(s) 442, 467, 533
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 2 cut(s) 430, 690
HpyCH4V TGCA 3 cut(s) 76, 269, 295
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 2 cut(s) 430, 690
Hsp92I GRCGYC 3 cut(s) 624, 665, 715
HspAI GCGC 5 cut(s) 11, 132, 651, 653, 665
KasI GGCGCC 1 cut(s) 664
Kpn2I TCCGGA 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 6 cut(s) 45, 242, 406, 550, 615, 726
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 3 cut(s) 228, 250, 309
MaeI CTAG 5 cut(s) 27, 50, 87, 185, 524
MaeII ACGT 2 cut(s) 430, 690
MalI GATC 6 cut(s) 47, 244, 408, 552, 617, 728
MbiI CCGCTC 1 cut(s) 639
MboI GATC 6 cut(s) 45, 242, 406, 550, 615, 726
MboII GAAGA 1 cut(s) 425
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 45
MluCI AATT 3 cut(s) 54, 217, 338
Mly113I GGCGCC 1 cut(s) 665
MlyI GAGTC 2 cut(s) 417, 597
MmeI TCCRAC 2 cut(s) 213, 549
MnlI CCTC 8 cut(s) 41, 126, 192, 344, 410, 637, 641, 678
MroI TCCGGA 1 cut(s) 729
MseI TTAA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 5 cut(s) 36, 442, 466, 668, 730
MspR9I CCNGG 2 cut(s) 36, 443
MunI CAATTG 1 cut(s) 54
MvnI CGCG 1 cut(s) 653
NarI GGCGCC 1 cut(s) 665
NciI CCSGG 2 cut(s) 36, 443
NdeII GATC 6 cut(s) 45, 242, 406, 550, 615, 726
NlaIV GGNNCC 2 cut(s) 47, 666
NmeAIII GCCGAG 1 cut(s) 576
PalAI GGCGCGCC 1 cut(s) 651
PauI GCGCGC 1 cut(s) 651
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PfeI GAWTC 3 cut(s) 104, 109, 545
PkrI GCNGC 4 cut(s) 78, 92, 193, 464
PleI GAGTC 2 cut(s) 417, 597
PluTI GGCGCC 1 cut(s) 668
PpsI GAGTC 2 cut(s) 417, 597
PspFI CCCAGC 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 47, 666
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 45
PteI GCGCGC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 701
SatI GCNGC 4 cut(s) 77, 91, 192, 463
Sau3AI GATC 6 cut(s) 45, 242, 406, 550, 615, 726
SchI GAGTC 2 cut(s) 417, 597
ScrFI CCNGG 2 cut(s) 36, 443
SetI ASST 8 cut(s) 81, 139, 336, 364, 421, 433, 500, 693
SfaNI GCATC 3 cut(s) 228, 250, 309
SfcI CTRYAG 1 cut(s) 74
SfoI GGCGCC 1 cut(s) 666
SgsI GGCGCGCC 1 cut(s) 651
Sse9I AATT 3 cut(s) 54, 217, 338
SspDI GGCGCC 1 cut(s) 664
SspMI CTAG 5 cut(s) 27, 50, 87, 185, 524
StyD4I CCNGG 2 cut(s) 34, 441
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 2 cut(s) 433, 693
TaqI TCGA 5 cut(s) 102, 107, 258, 415, 436
TasI AATT 3 cut(s) 54, 217, 338
TauI GCSGC 3 cut(s) 93, 194, 465
TfiI GAWTC 3 cut(s) 104, 109, 545
Tru1I TTAA 1 cut(s) 701
Tru9I TTAA 1 cut(s) 701
TscAI CASTG 2 cut(s) 78, 525
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 290, 371
TspGWI ACGGA 2 cut(s) 697, 708
TspRI CASTG 2 cut(s) 78, 525
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 5 cut(s) 27, 50, 87, 185, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.