FvH4_7g31931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000118
Physical Location & Seq
Forward (+)
23028085 .. 23028567
483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31931.t1

Sequence Viewer

Length: 366 bp
ATGTTGGAACTTGTGCCGGATGAGGAGTGGACGTCCGCATCGGCCTTAAAGTGCGGACGTCCCTCCGTTCTCCTCCGTACGGCTCCGATAACGGCGCGCCTCCACCCCAGCGGCCTCCAGCAGGGTCCCCGATCACTTTCCCTCCCCGGCGAGTCCGCCGAGATCACCCAAAACTTCAAACAAAATCAATCTCACCGGAAAACTGGAATTCAGCGGACTCGCCGAGGAGGAAAAGTGATCGGGGACGCTGCTGGAGGCCGCTGGGGTGGAGGCGCCGCGTCGTTGGAGCCGTTCGGTGGAGAACGGAGGGACGTCTGCACTTTAAGGACTGTGCGGACGTCCACTTCACATCCCTGCTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.04

Weight (kDa)

10.18

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 4 cut(s) 35, 61, 315, 341
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 2 cut(s) 97, 278
AciI CCGC 8 cut(s) 36, 54, 111, 156, 214, 259, 276, 334
AcsI RAATTY 1 cut(s) 207
AcyI GRCGYC 5 cut(s) 32, 58, 273, 312, 338
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 3 cut(s) 79, 121, 296
AgsI TTSAA 1 cut(s) 178
AoxI GGCC 3 cut(s) 42, 112, 256
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 207
AscI GGCGCGCC 1 cut(s) 95
AspLEI GCGC 3 cut(s) 97, 99, 275
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 157, 185
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 235
BceAI ACGGC 3 cut(s) 96, 108, 274
BcnI CCSGG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 4 cut(s) 112, 249, 259, 276
BlsI GCNGC 4 cut(s) 113, 250, 260, 277
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 5 cut(s) 84, 126, 127, 274, 288
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 47
BpmI CTGGAG 2 cut(s) 101, 273
BpuMI CCSGG 1 cut(s) 147
BsaHI GRCGYC 5 cut(s) 32, 58, 273, 312, 338
BsaJI CCNNGG 2 cut(s) 145, 223
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 6 cut(s) 17, 47, 126, 156, 219, 249
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 121, 296
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 145, 223
BseGI GGATG 2 cut(s) 25, 349
BseLI CCNNNNNNNGG 3 cut(s) 79, 121, 296
BseNI ACTGG 1 cut(s) 208
BsePI GCGCGC 1 cut(s) 95
BseRI GAGGAG 3 cut(s) 38, 62, 240
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 2 cut(s) 107, 261
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 2 cut(s) 97, 278
BshFI GGCC 3 cut(s) 44, 114, 258
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 3 cut(s) 17, 147, 196
BsiWI CGTACG 1 cut(s) 77
BslFI GGGAC 4 cut(s) 45, 111, 257, 323
BslI CCNNNNNNNGG 3 cut(s) 79, 121, 296
BsmFI GGGAC 4 cut(s) 45, 111, 257, 323
BsnI GGCC 3 cut(s) 44, 114, 258
Bsp143I GATC 3 cut(s) 131, 162, 237
BspACI CCGC 8 cut(s) 36, 54, 111, 156, 214, 259, 276, 334
BspANI GGCC 3 cut(s) 44, 114, 258
BspFNI CGCG 2 cut(s) 97, 278
BspLI GGNNCC 5 cut(s) 84, 126, 127, 274, 288
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 145, 223
BssHII GCGCGC 1 cut(s) 95
BssMI GATC 3 cut(s) 131, 162, 237
BssNI GRCGYC 5 cut(s) 32, 58, 273, 312, 338
Bst4CI ACNGT 1 cut(s) 331
BstACI GRCGYC 5 cut(s) 32, 58, 273, 312, 338
BstC8I GCNNGC 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 25, 349
BstFNI CGCG 2 cut(s) 97, 278
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 3 cut(s) 97, 99, 275
BstKTI GATC 3 cut(s) 134, 165, 240
BstMBI GATC 3 cut(s) 131, 162, 237
BstSCI CCNGG 1 cut(s) 145
BstUI CGCG 2 cut(s) 97, 278
BstV1I GCAGC 1 cut(s) 235
BsuRI GGCC 3 cut(s) 44, 114, 258
BtsCI GGATG 2 cut(s) 25, 349
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 3 cut(s) 97, 99, 275
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 2 cut(s) 254, 267
Csp6I GTAC 1 cut(s) 78
CviJI RGCY 5 cut(s) 44, 83, 114, 258, 289
CviKI_1 RGCY 5 cut(s) 44, 83, 114, 258, 289
CviQI GTAC 1 cut(s) 78
DinI GGCGCC 1 cut(s) 274
DpnI GATC 3 cut(s) 133, 164, 239
DpnII GATC 3 cut(s) 131, 162, 237
EciI GGCGGA 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
FaiI YATR 3 cut(s) 360, 362, 364
FaqI GGGAC 4 cut(s) 45, 111, 257, 323
Fnu4HI GCNGC 4 cut(s) 112, 249, 259, 276
FokI GGATG 2 cut(s) 32, 336
Fsp4HI GCNGC 4 cut(s) 112, 249, 259, 276
GlaI GCGC 3 cut(s) 96, 98, 274
GluI GCNGC 4 cut(s) 112, 249, 259, 276
GsaI CCCAGC 2 cut(s) 111, 265
GsuI CTGGAG 2 cut(s) 101, 273
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 44, 114, 258
HapII CCGG 3 cut(s) 17, 147, 196
HgaI GACGC 2 cut(s) 254, 267
HhaI GCGC 3 cut(s) 97, 99, 275
Hin1I GRCGYC 5 cut(s) 32, 58, 273, 312, 338
Hin6I GCGC 3 cut(s) 95, 97, 273
HinP1I GCGC 3 cut(s) 95, 97, 273
HinfI GANTC 2 cut(s) 152, 217
HpaII CCGG 3 cut(s) 17, 147, 196
HphI GGTGA 2 cut(s) 157, 185
Hpy166II GTNNAC 2 cut(s) 30, 342
Hpy188I TCNGA 1 cut(s) 87
Hpy8I GTNNAC 2 cut(s) 30, 342
Hpy99I CGWCG 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 4 cut(s) 32, 58, 312, 338
HpyCH4V TGCA 1 cut(s) 318
HpySE526I ACGT 4 cut(s) 32, 58, 312, 338
Hsp92I GRCGYC 5 cut(s) 32, 58, 273, 312, 338
HspAI GCGC 3 cut(s) 95, 97, 273
KasI GGCGCC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 131, 162, 237
LmnI GCTCC 2 cut(s) 88, 286
LpnPI CCDG 9 cut(s) 30, 107, 121, 131, 160, 189, 209, 237, 247
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 47
MaeII ACGT 4 cut(s) 32, 58, 312, 338
MalI GATC 3 cut(s) 133, 164, 239
MboI GATC 3 cut(s) 131, 162, 237
MluCI AATT 1 cut(s) 207
Mly113I GGCGCC 1 cut(s) 273
MlyI GAGTC 2 cut(s) 161, 211
MmeI TCCRAC 1 cut(s) 264
MseI TTAA 2 cut(s) 47, 323
MspA1I CMGCKG 3 cut(s) 111, 214, 261
MspI CCGG 3 cut(s) 17, 147, 196
MspR9I CCNGG 1 cut(s) 147
MvnI CGCG 2 cut(s) 97, 278
NarI GGCGCC 1 cut(s) 273
NciI CCSGG 1 cut(s) 147
NdeII GATC 3 cut(s) 131, 162, 237
NlaIV GGNNCC 5 cut(s) 84, 126, 127, 274, 288
NmeAIII GCCGAG 2 cut(s) 184, 248
PalAI GGCGCGCC 1 cut(s) 95
PauI GCGCGC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 287
Pfl23II CGTACG 1 cut(s) 77
PkrI GCNGC 4 cut(s) 113, 250, 260, 277
PleI GAGTC 2 cut(s) 160, 211
PluTI GGCGCC 1 cut(s) 276
PpsI GAGTC 2 cut(s) 160, 211
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
PspFI CCCAGC 2 cut(s) 107, 261
PspLI CGTACG 1 cut(s) 77
PspN4I GGNNCC 5 cut(s) 84, 126, 127, 274, 288
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PteI GCGCGC 1 cut(s) 95
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 47, 323
SatI GCNGC 4 cut(s) 112, 249, 259, 276
Sau3AI GATC 3 cut(s) 131, 162, 237
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 2 cut(s) 161, 211
ScrFI CCNGG 1 cut(s) 147
SetI ASST 4 cut(s) 35, 61, 315, 341
SfaNI GCATC 1 cut(s) 47
SfoI GGCGCC 1 cut(s) 274
SgsI GGCGCGCC 1 cut(s) 95
SinI GGWCC 1 cut(s) 125
Sse9I AATT 1 cut(s) 207
SsiI CCGC 8 cut(s) 36, 54, 111, 156, 214, 259, 276, 334
SspDI GGCGCC 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 4 cut(s) 35, 61, 315, 341
TasI AATT 1 cut(s) 207
TauI GCSGC 3 cut(s) 114, 261, 278
Tru1I TTAA 2 cut(s) 47, 323
Tru9I TTAA 2 cut(s) 47, 323
TseI GCWGC 1 cut(s) 248
TspGWI ACGGA 3 cut(s) 55, 65, 319
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 207
ZraI GACGTC 4 cut(s) 33, 59, 313, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.