FvH4_2g19220

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
16381648 .. 16381914
267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19220.t1

Sequence Viewer

Length: 267 bp
ATGGTCCGGCCGGGAAGTTTACCAGAAAACTTCAAACAGCTCATTCTCGACTTTGAACTCGTTGTCGGAGAGTCCGCCGGTAAGGAGAAGGACAAGATGGAGGTCTACTTCAGTGATGTCAAGGTCGCCGATGCCGTCAGTACCGTCTGGAGCCTACTTGAGCCGGCGTCCACACTTTTTTCGGTGCGGACATCCGCTTCACATCGAGCCTACACACACACACAATCCGGATCCAAACAGGACGTCCGCACTGGGATTAAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

89

Amino Acids

9.7

Weight (kDa)

6.72

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 227
AciI CCGC 4 cut(s) 75, 187, 195, 247
AclWI GGATC 2 cut(s) 225, 238
AcoI YGGCCR 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 94
AcyI GRCGYC 2 cut(s) 167, 243
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 34, 56
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 2 cut(s) 225, 238
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 230
BccI CCATC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 152, 232
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 167, 243
BsaWI WCCGGW 1 cut(s) 227
Bse118I RCCGGY 2 cut(s) 77, 163
Bse1I ACTGG 1 cut(s) 256
BseAI TCCGGA 1 cut(s) 227
BseGI GGATG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 256
BseX3I CGGCCG 1 cut(s) 8
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 11
BsiSI CCGG 5 cut(s) 7, 11, 78, 164, 228
BsnI GGCC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 4 cut(s) 75, 187, 195, 247
BspANI GGCC 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 152, 232
BspPI GGATC 2 cut(s) 225, 238
BsrFI RCCGGY 2 cut(s) 77, 163
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 2 cut(s) 77, 163
BssMI GATC 1 cut(s) 230
BssNI GRCGYC 2 cut(s) 167, 243
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 2 cut(s) 167, 243
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstMCI CGRYCG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZI CGGCCG 1 cut(s) 8
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 118, 249
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 2 cut(s) 77, 163
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 5 cut(s) 10, 40, 153, 163, 209
CviKI_1 RGCY 5 cut(s) 10, 40, 153, 163, 209
CviQI GTAC 1 cut(s) 141
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 8
EagI CGGCCG 1 cut(s) 8
EciI GGCGGA 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 94
FblI GTMKAC 1 cut(s) 105
FokI GGATG 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 10
HapII CCGG 5 cut(s) 7, 11, 78, 164, 228
HgaI GACGC 1 cut(s) 156
Hin1I GRCGYC 2 cut(s) 167, 243
HinfI GANTC 1 cut(s) 71
HpaII CCGG 5 cut(s) 7, 11, 78, 164, 228
Hpy166II GTNNAC 3 cut(s) 20, 106, 171
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 47, 148, 228
Hpy8I GTNNAC 3 cut(s) 20, 106, 171
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 2 cut(s) 167, 243
Kpn2I TCCGGA 1 cut(s) 227
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 9 cut(s) 20, 24, 36, 91, 133, 177, 224, 237, 241
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 243
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MflI RGATCY 1 cut(s) 230
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 94
MroI TCCGGA 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 163
MseI TTAA 1 cut(s) 258
MspI CCGG 5 cut(s) 7, 11, 78, 164, 228
MspR9I CCNGG 1 cut(s) 12
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 230
NgoMIV GCCGGC 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 152, 232
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 152, 232
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 12
SetI ASST 4 cut(s) 42, 105, 126, 246
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SsiI CCGC 4 cut(s) 75, 187, 195, 247
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 48, 205
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 118, 256
TspRI CASTG 2 cut(s) 118, 256
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 105
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.