FvH4_1g15053

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
8508516 .. 8509075
560 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15053.t1

Sequence Viewer

Length: 345 bp
ATGTCCCTCATTTCGCCACCGTACGGCACCGGCGAGCACCGGCGAGGGCGCCCCTCCACCCCAACGGACTCCAGCAGCTTCCCCGACCTCTTTCCATCTCCGGCGAGTCCGCCGAATTCCAAATTTCTGGCCAGATCACCCAAAACTTCAAACAAAGTCAATCTAGCCGGAAAACTGGAATTCGGCGGACTCACCAGGGATGGAAAGAGGTCGGGGAAGCTGCTGGAGGCGCGCGCCATACGGTGGCGAACGGAGGGAAATCCGCACCTTTTCCGGCGAGATCACCCAAAACTTCAAATAAAATCGATCTCGCCTGAAACTGGAATTCGGCGGACTCGCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

11.49

Isoelectric Point (pI)

79.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 48
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 2 cut(s) 232, 234
AciI CCGC 4 cut(s) 110, 186, 263, 331
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 4 cut(s) 115, 122, 179, 324
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 23, 243, 320
AgsI TTSAA 2 cut(s) 150, 296
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 2 cut(s) 78, 220
AluI AGCT 2 cut(s) 78, 220
Alw21I GWGCWC 1 cut(s) 39
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 75, 220
ApoI RAATTY 4 cut(s) 115, 122, 179, 324
AspLEI GCGC 4 cut(s) 51, 232, 234, 236
AsuHPI GGTGA 3 cut(s) 129, 184, 275
BalI TGGCCA 1 cut(s) 131
BanI GGYRCC 2 cut(s) 26, 48
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 87, 207
BccI CCATC 2 cut(s) 103, 194
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 196
BfaI CTAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 2 cut(s) 76, 221
BlsI GCNGC 2 cut(s) 77, 222
Bme1390I CCNGG 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 28, 50
BmrFI CCNGG 1 cut(s) 196
BpmI CTGGAG 2 cut(s) 55, 245
Bsa29I ATCGAT 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 243, 320
Bse118I RCCGGY 2 cut(s) 29, 39
Bse1I ACTGG 2 cut(s) 180, 325
BseBI CCWGG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 3 cut(s) 23, 243, 320
BseNI ACTGG 2 cut(s) 180, 325
BsePI GCGCGC 2 cut(s) 230, 232
BseXI GCAGC 2 cut(s) 87, 207
Bsh1236I CGCG 2 cut(s) 232, 234
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 2 cut(s) 26, 48
BshVI ATCGAT 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 5 cut(s) 30, 40, 101, 168, 274
BsiWI CGTACG 1 cut(s) 21
BslI CCNNNNNNNGG 3 cut(s) 23, 243, 320
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 134, 280, 306
BspACI CCGC 4 cut(s) 110, 186, 263, 331
BspANI GGCC 1 cut(s) 131
BspDI ATCGAT 1 cut(s) 305
BspFNI CGCG 2 cut(s) 232, 234
BspLI GGNNCC 2 cut(s) 28, 50
BspT107I GGYRCC 2 cut(s) 26, 48
BsrFI RCCGGY 2 cut(s) 29, 39
BsrI ACTGG 2 cut(s) 180, 325
BssAI RCCGGY 2 cut(s) 29, 39
BssECI CCNNGG 1 cut(s) 195
BssHII GCGCGC 2 cut(s) 230, 232
BssMI GATC 3 cut(s) 134, 280, 306
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 21, 243
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 35, 232, 234
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 2 cut(s) 232, 234
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 4 cut(s) 51, 232, 234, 236
BstKTI GATC 3 cut(s) 137, 283, 309
BstMBI GATC 3 cut(s) 134, 280, 306
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstUI CGCG 2 cut(s) 232, 234
BstV1I GCAGC 2 cut(s) 87, 207
BstXI CCANNNNNNTGG 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 305
BsuRI GGCC 1 cut(s) 131
BsuTUI ATCGAT 1 cut(s) 305
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 35, 232, 234
CfoI GCGC 4 cut(s) 51, 232, 234, 236
Cfr10I RCCGGY 2 cut(s) 29, 39
ClaI ATCGAT 1 cut(s) 305
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 4 cut(s) 78, 131, 167, 220
CviKI_1 RGCY 4 cut(s) 78, 131, 167, 220
CviQI GTAC 1 cut(s) 22
DinI GGCGCC 1 cut(s) 50
DpnI GATC 3 cut(s) 136, 282, 308
DpnII GATC 3 cut(s) 134, 280, 306
EaeI YGGCCR 1 cut(s) 129
EciI GGCGGA 2 cut(s) 99, 201
EcoRI GAATTC 3 cut(s) 115, 179, 324
EcoRII CCWGG 1 cut(s) 194
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaiI YATR 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 76, 221
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 76, 221
FspBI CTAG 1 cut(s) 164
GlaI GCGC 4 cut(s) 50, 231, 233, 235
GluI GCNGC 2 cut(s) 76, 221
GsuI CTGGAG 2 cut(s) 55, 245
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 131
HapII CCGG 5 cut(s) 30, 40, 101, 168, 274
HhaI GCGC 4 cut(s) 51, 232, 234, 236
Hin1I GRCGYC 1 cut(s) 49
Hin6I GCGC 4 cut(s) 49, 230, 232, 234
HinP1I GCGC 4 cut(s) 49, 230, 232, 234
HinfI GANTC 4 cut(s) 68, 106, 189, 334
HpaII CCGG 5 cut(s) 30, 40, 101, 168, 274
HphI GGTGA 3 cut(s) 129, 184, 275
HpyCH4III ACNGT 2 cut(s) 21, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 49
HspAI GCGC 4 cut(s) 49, 230, 232, 234
KasI GGCGCC 1 cut(s) 48
Kzo9I GATC 3 cut(s) 134, 280, 306
Lsp1109I GCAGC 2 cut(s) 87, 207
MaeI CTAG 1 cut(s) 164
MalI GATC 3 cut(s) 136, 282, 308
MboI GATC 3 cut(s) 134, 280, 306
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 4 cut(s) 115, 122, 179, 324
MluNI TGGCCA 1 cut(s) 131
Mly113I GGCGCC 1 cut(s) 49
MlyI GAGTC 4 cut(s) 62, 115, 183, 328
MnlI CCTC 7 cut(s) 17, 38, 64, 98, 201, 220, 247
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 5 cut(s) 30, 40, 101, 168, 274
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 2 cut(s) 232, 234
MwoI GCNNNNNNNGC 1 cut(s) 229
NarI GGCGCC 1 cut(s) 49
NdeII GATC 3 cut(s) 134, 280, 306
NlaIV GGNNCC 2 cut(s) 28, 50
PauI GCGCGC 2 cut(s) 230, 232
PcsI WCGNNNNNNNCGW 1 cut(s) 30
Pfl23II CGTACG 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 2 cut(s) 77, 222
PleI GAGTC 4 cut(s) 62, 114, 183, 328
PluTI GGCGCC 1 cut(s) 52
PpsI GAGTC 4 cut(s) 62, 114, 183, 328
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspLI CGTACG 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 28, 50
PteI GCGCGC 2 cut(s) 230, 232
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SatI GCNGC 2 cut(s) 76, 221
Sau3AI GATC 3 cut(s) 134, 280, 306
SchI GAGTC 4 cut(s) 62, 115, 183, 328
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 39
SetI ASST 5 cut(s) 80, 90, 212, 222, 270
SfoI GGCGCC 1 cut(s) 50
SgrAI CRCCGGYG 2 cut(s) 29, 39
Sse9I AATT 4 cut(s) 115, 122, 179, 324
SsiI CCGC 4 cut(s) 110, 186, 263, 331
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 21, 243
TaqI TCGA 1 cut(s) 305
TasI AATT 4 cut(s) 115, 122, 179, 324
TseI GCWGC 2 cut(s) 75, 220
TspGWI ACGGA 2 cut(s) 80, 266
Van91I CCANNNNNTGG 1 cut(s) 243
XapI RAATTY 4 cut(s) 115, 122, 179, 324
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.