FvH4_2g19652

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
16638422 .. 16639134
713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19652.t1

Sequence Viewer

Length: 402 bp
ATGAAGAAGAAGACAGAAGAAATCCAGGTCCAAAGGAAGAAAAAGCCCGAGCTCGAGCGAGACACAGGCCCAAGCCCGACCGACACTGTTCTTCAGAACAAGGATGAGAAGCGGACCGTCCGCACTGGGCTTAAAGTGCGGACTTCGTCTGTTCTCCGCCGTCTCACGCTGGCGACGGTTTTTCTCCTTCCCGGACGACAGCACAGGCTTCCAGGACGGTTTCTCTCCTTCCAGGACTGGCCAGCGACAAGTTTTCCGGCCGGATTGAAGCTCTGGACGGAAAACACCATGATTGATCAAGGTTGGCCGGAAAACTTGTCGCCGGTCAGTCCTGGAAGGAGAGAAGCCGTCCTGGAAGCCTGTGCTGTCGTCCGGGAAGGAGAGAAGCCGTCGCCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.05

Weight (kDa)

10.07

Isoelectric Point (pI)

62.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 112, 121, 139, 157
AcoI YGGCCR 3 cut(s) 239, 258, 305
AcuI CTGAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 5 cut(s) 24, 211, 231, 331, 351
AluBI AGCT 2 cut(s) 52, 271
AluI AGCT 2 cut(s) 52, 271
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 54, 167
Ama87I CYCGRG 2 cut(s) 47, 53
AoxI GGCC 4 cut(s) 67, 239, 258, 305
AspS9I GGNCC 3 cut(s) 28, 68, 114
AsuC2I CCSGG 2 cut(s) 192, 374
AvaI CYCGRG 2 cut(s) 47, 53
AvaII GGWCC 2 cut(s) 28, 114
BalI TGGCCA 1 cut(s) 241
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 54
BceAI ACGGC 3 cut(s) 144, 332, 373
BciT130I CCWGG 5 cut(s) 26, 213, 233, 333, 353
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 2 cut(s) 192, 374
BcoDI GTCTC 2 cut(s) 54, 167
Bme1390I CCNGG 7 cut(s) 26, 192, 213, 233, 333, 353, 374
Bme18I GGWCC 2 cut(s) 28, 114
BmeT110I CYCGRG 2 cut(s) 47, 53
BmgT120I GGNCC 3 cut(s) 28, 68, 114
BmrFI CCNGG 7 cut(s) 26, 192, 213, 233, 333, 353, 374
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 192, 374
Bse118I RCCGGY 2 cut(s) 322, 394
Bse1I ACTGG 2 cut(s) 130, 242
BseBI CCWGG 5 cut(s) 26, 213, 233, 333, 353
BseGI GGATG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 130, 242
BseX3I CGGCCG 1 cut(s) 258
Bsh1285I CGRYCG 2 cut(s) 81, 261
BshFI GGCC 4 cut(s) 69, 241, 260, 307
BsiEI CGRYCG 2 cut(s) 81, 261
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 2 cut(s) 47, 53
BsiSI CCGG 7 cut(s) 192, 257, 261, 308, 323, 373, 395
BsmAI GTCTC 2 cut(s) 54, 167
BsmBI CGTCTC 1 cut(s) 167
BsnI GGCC 4 cut(s) 69, 241, 260, 307
BsoBI CYCGRG 2 cut(s) 47, 53
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 4 cut(s) 112, 121, 139, 157
BspANI GGCC 4 cut(s) 69, 241, 260, 307
BsrFI RCCGGY 2 cut(s) 322, 394
BsrI ACTGG 2 cut(s) 130, 242
BssAI RCCGGY 2 cut(s) 322, 394
BssMI GATC 1 cut(s) 295
Bst2UI CCWGG 5 cut(s) 26, 213, 233, 333, 353
Bst4CI ACNGT 4 cut(s) 88, 118, 178, 219
BstC8I GCNNGC 3 cut(s) 171, 243, 396
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 54, 167
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 2 cut(s) 81, 261
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 5 cut(s) 26, 213, 233, 333, 353
BstSCI CCNGG 7 cut(s) 24, 190, 211, 231, 331, 351, 372
BstV2I GAAGAC 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 258
BsuRI GGCC 4 cut(s) 69, 241, 260, 307
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 84, 123
Cac8I GCNNGC 3 cut(s) 171, 243, 396
Cfr10I RCCGGY 2 cut(s) 322, 394
Cfr13I GGNCC 3 cut(s) 28, 68, 114
CpoI CGGWCCG 1 cut(s) 114
CspI CGGWCCG 1 cut(s) 114
CviAII CATG 1 cut(s) 289
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 3 cut(s) 239, 258, 305
EagI CGGCCG 1 cut(s) 258
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 28, 114
Eco52I CGGCCG 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 47, 53
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 5 cut(s) 24, 211, 231, 331, 351
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 292
FaiI YATR 1 cut(s) 290
FatI CATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 295
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 54
HaeIII GGCC 4 cut(s) 69, 241, 260, 307
HapII CCGG 7 cut(s) 192, 257, 261, 308, 323, 373, 395
Hin1II CATG 1 cut(s) 292
HpaII CCGG 7 cut(s) 192, 257, 261, 308, 323, 373, 395
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 178, 394
HpyAV CCTTC 4 cut(s) 197, 238, 330, 371
HpyCH4III ACNGT 4 cut(s) 88, 118, 178, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 1 cut(s) 292
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 1 cut(s) 295
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 6 cut(s) 16, 19, 22, 29, 49, 83
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 241
MreI CGCCGGCG 1 cut(s) 394
MroNI GCCGGC 1 cut(s) 394
MscI TGGCCA 1 cut(s) 241
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 241
MspI CCGG 7 cut(s) 192, 257, 261, 308, 323, 373, 395
MspR9I CCNGG 7 cut(s) 26, 192, 213, 233, 333, 353, 374
MvaI CCWGG 5 cut(s) 26, 213, 233, 333, 353
MwoI GCNNNNNNNGC 1 cut(s) 136
NaeI GCCGGC 1 cut(s) 396
NciI CCSGG 2 cut(s) 192, 374
NdeII GATC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 396
PflFI GACNNNGTC 1 cut(s) 145
PfoI TCCNGGA 6 cut(s) 190, 211, 231, 331, 351, 372
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 5 cut(s) 24, 211, 231, 331, 351
PspGI CCWGG 5 cut(s) 24, 211, 231, 331, 351
PspPI GGNCC 3 cut(s) 28, 68, 114
PspXI VCTCGAGB 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 145
Rsr2I CGGWCCG 1 cut(s) 114
RsrII CGGWCCG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 3 cut(s) 28, 68, 114
ScrFI CCNGG 7 cut(s) 26, 192, 213, 233, 333, 353, 374
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 30, 54, 273, 304
Sfr274I CTCGAG 1 cut(s) 53
SgrAI CRCCGGYG 1 cut(s) 394
SinI GGWCC 2 cut(s) 28, 114
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SsiI CCGC 4 cut(s) 112, 121, 139, 157
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 7 cut(s) 24, 190, 211, 231, 331, 351, 372
TaaI ACNGT 4 cut(s) 88, 118, 178, 219
TaqI TCGA 1 cut(s) 54
TaqII GACCGA 1 cut(s) 95
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 91, 130
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 91, 130
Tth111I GACNNNGTC 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 28, 114
XhoI CTCGAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.