FvH4_2g29879

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
23171058 .. 23171885
828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29879.t1

Sequence Viewer

Length: 453 bp
ATGACGGTGAAAGAGAGCGGAGGTGAGAGGTTTGAGGAGGAGGAGGAGAGGCGGGTCGTCCGTCGCCGGCGTCGGTCGGCTCACGTCCGCATAGCTCTTAAAGTGCGGATGTCCCTCCGTTTGCCATCGTACGGCTCCGACGACGGTGTGCCTCCACCCCAGCGGCCTCCAACAGCTTCCCCGGTCATTTTTCCTTCCCGGCGAGTCCGTTATTTTCCAGTTTTCCAGCGAGATCACCAAAAACTTCAAATCAAGTCGATCTTCCCGGAAAACTGGAATTCGACGGACTCGCCGGGGAGGGAAAGTGATCAGGGACGCTGCTGGAGGCCGCTAAGGTGGAGGCGCGCCGTCGTCGGAGTCGTACGGTGGCAAATGGAGGGACGTCCGCACTTTAAGGCGTGCGGACGTTCTCCTCTGATCCGGACTGTGTATATATCAGGGCACTTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.7

Weight (kDa)

11.41

Isoelectric Point (pI)

99.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
AccBSI CCGCTC 1 cut(s) 18
AccII CGCG 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 420
AciI CCGC 8 cut(s) 18, 52, 88, 106, 163, 329, 386, 402
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 1 cut(s) 277
AcyI GRCGYC 2 cut(s) 70, 382
AfaI GTAC 2 cut(s) 131, 363
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 248
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 2 cut(s) 95, 176
AluI AGCT 2 cut(s) 95, 176
AlwI GGATC 1 cut(s) 412
Aor13HI TCCGGA 1 cut(s) 420
AoxI GGCC 2 cut(s) 164, 326
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 277
AscI GGCGCGCC 1 cut(s) 343
AspLEI GCGC 2 cut(s) 345, 347
AsuC2I CCSGG 4 cut(s) 182, 199, 266, 294
AsuHPI GGTGA 3 cut(s) 19, 35, 227
BaeGI GKGCMC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 305
BccI CCATC 1 cut(s) 133
BceAI ACGGC 2 cut(s) 148, 332
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 4 cut(s) 182, 199, 266, 294
BisI GCNGC 3 cut(s) 164, 319, 329
BlsI GCNGC 3 cut(s) 165, 320, 330
Bme1390I CCNGG 4 cut(s) 182, 199, 266, 294
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 4 cut(s) 182, 199, 266, 294
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 182, 199, 266, 294
BsaHI GRCGYC 2 cut(s) 70, 382
BsaJI CCNNGG 2 cut(s) 180, 293
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 218, 278
BseAI TCCGGA 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 180, 293
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 218, 278
BsePI GCGCGC 1 cut(s) 343
BseRI GAGGAG 5 cut(s) 50, 53, 56, 59, 402
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 166, 328
BsiEI CGRYCG 1 cut(s) 77
BsiSI CCGG 6 cut(s) 67, 182, 199, 266, 293, 421
BsiWI CGTACG 2 cut(s) 129, 361
BslFI GGGAC 3 cut(s) 97, 327, 393
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 3 cut(s) 97, 327, 393
BsnI GGCC 2 cut(s) 166, 328
Bsp1286I GDGCHC 1 cut(s) 444
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 4 cut(s) 232, 258, 307, 417
BspACI CCGC 8 cut(s) 18, 52, 88, 106, 163, 329, 386, 402
BspANI GGCC 2 cut(s) 166, 328
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 2 cut(s) 218, 278
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 180, 293
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 4 cut(s) 232, 258, 307, 417
BssNI GRCGYC 2 cut(s) 70, 382
Bst4CI ACNGT 4 cut(s) 7, 146, 366, 427
BstACI GRCGYC 2 cut(s) 70, 382
BstC8I GCNNGC 3 cut(s) 68, 345, 400
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 345, 347
BstKTI GATC 4 cut(s) 235, 261, 310, 420
BstMBI GATC 4 cut(s) 232, 258, 307, 417
BstMCI CGRYCG 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 180, 197, 264, 292
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 305
BsuRI GGCC 2 cut(s) 166, 328
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 68, 345, 400
CfoI GCGC 2 cut(s) 345, 347
Cfr10I RCCGGY 1 cut(s) 66
CseI GACGC 2 cut(s) 59, 324
Csp6I GTAC 2 cut(s) 130, 362
CviJI RGCY 6 cut(s) 80, 95, 135, 166, 176, 328
CviKI_1 RGCY 6 cut(s) 80, 95, 135, 166, 176, 328
CviQI GTAC 2 cut(s) 130, 362
DdeI CTNAG 1 cut(s) 332
DpnI GATC 4 cut(s) 234, 260, 309, 419
DpnII GATC 4 cut(s) 232, 258, 307, 417
EcoRI GAATTC 1 cut(s) 277
FaiI YATR 3 cut(s) 92, 432, 434
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 3 cut(s) 97, 327, 393
FauI CCCGC 1 cut(s) 45
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 164, 319, 329
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 164, 319, 329
GlaI GCGC 2 cut(s) 344, 346
GluI GCNGC 3 cut(s) 164, 319, 329
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 2 cut(s) 166, 328
HapII CCGG 6 cut(s) 67, 182, 199, 266, 293, 421
HgaI GACGC 2 cut(s) 59, 324
HhaI GCGC 2 cut(s) 345, 347
Hin1I GRCGYC 2 cut(s) 70, 382
Hin6I GCGC 2 cut(s) 343, 345
HinP1I GCGC 2 cut(s) 343, 345
HinfI GANTC 3 cut(s) 204, 287, 357
HpaII CCGG 6 cut(s) 67, 182, 199, 266, 293, 421
HphI GGTGA 3 cut(s) 19, 35, 227
Hpy188I TCNGA 3 cut(s) 139, 356, 417
Hpy188III TCNNGA 1 cut(s) 421
Hpy99I CGWCG 7 cut(s) 66, 75, 143, 146, 286, 353, 356
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 4 cut(s) 7, 146, 366, 427
HpyCH4IV ACGT 3 cut(s) 84, 382, 406
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 3 cut(s) 84, 382, 406
Hsp92I GRCGYC 2 cut(s) 70, 382
HspAI GCGC 2 cut(s) 343, 345
Kpn2I TCCGGA 1 cut(s) 420
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 232, 258, 307, 417
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 1 cut(s) 305
MaeII ACGT 3 cut(s) 84, 382, 406
MalI GATC 4 cut(s) 234, 260, 309, 419
MbiI CCGCTC 1 cut(s) 18
MboI GATC 4 cut(s) 232, 258, 307, 417
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 1 cut(s) 277
MlyI GAGTC 3 cut(s) 213, 281, 366
MmeI TCCRAC 3 cut(s) 162, 194, 334
MreI CGCCGGCG 1 cut(s) 66
MroI TCCGGA 1 cut(s) 420
MroNI GCCGGC 1 cut(s) 66
MseI TTAA 3 cut(s) 99, 393, 451
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 6 cut(s) 67, 182, 199, 266, 293, 421
MspR9I CCNGG 4 cut(s) 182, 199, 266, 294
MvnI CGCG 1 cut(s) 345
NaeI GCCGGC 1 cut(s) 68
NciI CCSGG 4 cut(s) 182, 199, 266, 294
NdeII GATC 4 cut(s) 232, 258, 307, 417
NgoMIV GCCGGC 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 136
PalAI GGCGCGCC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 357
PdiI GCCGGC 1 cut(s) 68
Pfl23II CGTACG 2 cut(s) 129, 361
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 3 cut(s) 165, 320, 330
PleI GAGTC 3 cut(s) 212, 281, 365
PpsI GAGTC 3 cut(s) 212, 281, 365
PspFI CCCAGC 1 cut(s) 159
PspLI CGTACG 2 cut(s) 129, 361
PspN4I GGNNCC 1 cut(s) 136
PteI GCGCGC 1 cut(s) 343
RsaI GTAC 2 cut(s) 131, 363
RsaNI GTAC 2 cut(s) 130, 362
SaqAI TTAA 3 cut(s) 99, 393, 451
SatI GCNGC 3 cut(s) 164, 319, 329
Sau3AI GATC 4 cut(s) 232, 258, 307, 417
SchI GAGTC 3 cut(s) 213, 281, 366
ScrFI CCNGG 4 cut(s) 182, 199, 266, 294
SduI GDGCHC 1 cut(s) 444
SetI ASST 8 cut(s) 25, 32, 87, 97, 178, 338, 385, 409
SgrAI CRCCGGYG 1 cut(s) 66
SgsI GGCGCGCC 1 cut(s) 343
Sse9I AATT 1 cut(s) 277
SsiI CCGC 8 cut(s) 18, 52, 88, 106, 163, 329, 386, 402
StyD4I CCNGG 4 cut(s) 180, 197, 264, 292
TaaI ACNGT 4 cut(s) 7, 146, 366, 427
TaiI ACGT 3 cut(s) 87, 385, 409
TaqI TCGA 2 cut(s) 257, 281
TaqII GACCGA 1 cut(s) 63
TasI AATT 1 cut(s) 277
TauI GCSGC 2 cut(s) 166, 331
Tru1I TTAA 3 cut(s) 99, 393, 451
Tru9I TTAA 3 cut(s) 99, 393, 451
TseI GCWGC 1 cut(s) 318
TspGWI ACGGA 4 cut(s) 50, 107, 197, 299
XapI RAATTY 1 cut(s) 277
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.