FvH4_3g42521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
35458152 .. 35463518
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42521.t1

Sequence Viewer

Length: 492 bp
ATGGTGGTAGCCGTGAAATTGGACTTTTCTAAGGTTGCAAGGTTTCAGATTGAGAAACATCTGGTCGGGAGGAAGAAGAAGAAGTCGGTCAAGGAGAAGAAGGCGGTGAAGAAGAAGCAGAAGGCGGAGGAGAAGAAGAAGACGACGTTCGTACCCGACATCTTCACCGTCCGTTTGAGCACGTGGACTTGGGCCATTAGTTGGGCGTTTGCGAGTCCAGAAGACGGCTCGTTGTGTTCCAATTCTGAAAGACGAAGATATGACTCTGTAGCCTTCGATTGGAATCTCAAGGACCGAATCCTGAACGTGTGGAGATCGGCGTCTGAAAGGATCCTCACTCTTTCGCACCCACCACCGTTCGACGACCCTGATCTGAGGACCTCAACTCGCTGCTCAACCCGAGGCCCGAGAATCCGATTCTGTCCAATCATTGGCTTCTTTCGCCTCAATGACGCCGGCAAGGGGATAAGCAGCCCCACCGAAGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

10.01

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 201, 431
AciI CCGC 2 cut(s) 104, 125
AclWI GGATC 2 cut(s) 325, 338
AcvI CACGTG 1 cut(s) 183
AcyI GRCGYC 2 cut(s) 320, 453
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 5 cut(s) 201, 224, 279, 431, 462
AflIII ACRYGT 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 2 cut(s) 325, 338
Ama87I CYCGRG 2 cut(s) 399, 406
AoxI GGCC 2 cut(s) 192, 403
ApeKI GCWGC 2 cut(s) 390, 471
AspS9I GGNCC 4 cut(s) 192, 292, 378, 404
AsuHPI GGTGA 2 cut(s) 118, 157
AvaI CYCGRG 2 cut(s) 399, 406
AvaII GGWCC 2 cut(s) 292, 378
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BamHI GGATCC 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 146, 228
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 377, 483
BceAI ACGGC 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 391, 472
BlsI GCNGC 2 cut(s) 392, 473
Bme18I GGWCC 2 cut(s) 292, 378
BmeT110I CYCGRG 2 cut(s) 399, 406
BmgT120I GGNCC 4 cut(s) 192, 292, 378, 404
BmiI GGNNCC 1 cut(s) 332
BpiI GAAGAC 2 cut(s) 146, 228
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 2 cut(s) 320, 453
BsaJI CCNNGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 224, 279, 431, 462
Bse118I RCCGGY 1 cut(s) 455
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 400
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 5 cut(s) 201, 224, 279, 431, 462
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 377, 483
BshFI GGCC 2 cut(s) 194, 405
BsiHKAI GWGCWC 1 cut(s) 182
BsiHKCI CYCGRG 2 cut(s) 399, 406
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 5 cut(s) 201, 224, 279, 431, 462
BsnI GGCC 2 cut(s) 194, 405
BsoBI CYCGRG 2 cut(s) 399, 406
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 314, 330, 370
BspACI CCGC 2 cut(s) 104, 125
BspANI GGCC 2 cut(s) 194, 405
BspCNI CTCAG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 2 cut(s) 325, 338
BsrFI RCCGGY 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 3 cut(s) 314, 330, 370
BssNI GRCGYC 2 cut(s) 320, 453
Bst4CI ACNGT 2 cut(s) 169, 357
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 2 cut(s) 320, 453
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 30, 374
BstKTI GATC 3 cut(s) 317, 333, 373
BstMBI GATC 3 cut(s) 314, 330, 370
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 377, 483
BstV2I GAAGAC 2 cut(s) 146, 228
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 2 cut(s) 194, 405
Cac8I GCNNGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 4 cut(s) 192, 292, 378, 404
CseI GACGC 2 cut(s) 309, 461
Csp6I GTAC 1 cut(s) 152
CviJI RGCY 7 cut(s) 11, 194, 228, 272, 405, 435, 474
CviKI_1 RGCY 7 cut(s) 11, 194, 228, 272, 405, 435, 474
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 2 cut(s) 30, 374
DpnI GATC 3 cut(s) 316, 332, 372
DpnII GATC 3 cut(s) 314, 330, 370
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 140
Eco47I GGWCC 2 cut(s) 292, 378
Eco72I CACGTG 1 cut(s) 183
Eco88I CYCGRG 2 cut(s) 399, 406
EcoO109I RGGNCCY 1 cut(s) 378
FaiI YATR 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 391, 472
Fsp4HI GCNGC 2 cut(s) 391, 472
GluI GCNGC 2 cut(s) 391, 472
HaeIII GGCC 2 cut(s) 194, 405
HapII CCGG 1 cut(s) 456
HgaI GACGC 2 cut(s) 309, 461
Hin1I GRCGYC 2 cut(s) 320, 453
HinfI GANTC 6 cut(s) 214, 263, 283, 297, 411, 417
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 118, 157
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 5 cut(s) 48, 247, 325, 375, 416
Hpy188III TCNNGA 3 cut(s) 67, 218, 301
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 148, 365
HpyAV CCTTC 3 cut(s) 94, 115, 283
HpyCH4III ACNGT 2 cut(s) 169, 357
HpyCH4IV ACGT 3 cut(s) 146, 182, 306
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 2 cut(s) 30, 374
HpySE526I ACGT 3 cut(s) 146, 182, 306
Hsp92I GRCGYC 2 cut(s) 320, 453
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Kzo9I GATC 3 cut(s) 314, 330, 370
LpnPI CCDG 5 cut(s) 47, 231, 314, 381, 469
Lsp1109I GCAGC 2 cut(s) 377, 483
MaeII ACGT 3 cut(s) 146, 182, 306
MalI GATC 3 cut(s) 316, 332, 372
MboI GATC 3 cut(s) 314, 330, 370
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 2 cut(s) 17, 241
MlyI GAGTC 2 cut(s) 223, 257
MnlI CCTC 8 cut(s) 63, 121, 344, 369, 391, 395, 455, 478
MroNI GCCGGC 1 cut(s) 455
MspI CCGG 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 441
NaeI GCCGGC 1 cut(s) 457
NdeII GATC 3 cut(s) 314, 330, 370
NgoMIV GCCGGC 1 cut(s) 455
NlaIV GGNNCC 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 283, 297, 411, 417
PflMI CCANNNNNTGG 2 cut(s) 201, 431
PkrI GCNGC 2 cut(s) 392, 473
PleI GAGTC 2 cut(s) 222, 257
PmaCI CACGTG 1 cut(s) 183
PmlI CACGTG 1 cut(s) 183
PpsI GAGTC 2 cut(s) 222, 257
Ppu21I YACGTR 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 378
PspCI CACGTG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 4 cut(s) 192, 292, 378, 404
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SatI GCNGC 2 cut(s) 391, 472
Sau3AI GATC 3 cut(s) 314, 330, 370
Sau96I GGNCC 4 cut(s) 192, 292, 378, 404
SchI GAGTC 2 cut(s) 223, 257
SduI GDGCHC 1 cut(s) 182
SetI ASST 6 cut(s) 36, 44, 149, 185, 309, 383
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 292, 378
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 17, 241
SsiI CCGC 2 cut(s) 104, 125
TaaI ACNGT 2 cut(s) 169, 357
TaiI ACGT 3 cut(s) 149, 185, 309
TaqI TCGA 2 cut(s) 276, 360
TaqII GACCGA 2 cut(s) 76, 309
TasI AATT 2 cut(s) 17, 241
TfiI GAWTC 4 cut(s) 283, 297, 411, 417
TseI GCWGC 2 cut(s) 390, 471
TspGWI ACGGA 1 cut(s) 161
Van91I CCANNNNNTGG 2 cut(s) 201, 431
VpaK11BI GGWCC 2 cut(s) 292, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.