FvH4_5g03783

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
2243476 .. 2244387
912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03783.t1

Sequence Viewer

Length: 519 bp
ATGATTAAAGATCAGGCAGCTCCTCCTGTGCAGACGTCCGCACCGTTTTACATTGTGGATTTTCGTCTGTTCGTCACCGTACGACGCTGGCGAGGGCGCGCCTCCACCCCAGCCGACTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGATGGAAAGTGGTTGGGGAAGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCGCGCGGCGCTCCCGGATGTGAAGCGAACGTCCGCACTCCGGCTTAGAGTGCAGACTTCGTCCGTTCTCCGCCGTCTCACGCCGGCGACGGCTTGTCTCCTTCCCGGACTACAGCACATGCTTCCAAGACGACTTCTCTCCTTCCAAGACTGGCCGACGACAAGTTTTCCGGCCAATCTTGATCAATCATGGTGTTTTCCGTCCAGAACTTCAATCCGGCCAGAAAACTTGTCGCCAGCCAGTCCTGGAAGGAGAGAAACAGTCCTGGAAGCCTGTGCTCTCATCCGGGAAGGAGAGAATCCGTCGCCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.09

Weight (kDa)

10.42

Isoelectric Point (pI)

80.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccII CGCG 4 cut(s) 99, 199, 207, 209
AciI CCGC 5 cut(s) 39, 183, 209, 237, 274
AcoI YGGCCR 3 cut(s) 356, 375, 422
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 208, 243
AgsI TTSAA 1 cut(s) 417
AhdI GACNNNNNGTC 1 cut(s) 297
AjnI CCWGG 2 cut(s) 448, 468
AluBI AGCT 3 cut(s) 20, 126, 172
AluI AGCT 3 cut(s) 20, 126, 172
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 2 cut(s) 284, 305
AoxI GGCC 3 cut(s) 356, 375, 422
ApeKI GCWGC 3 cut(s) 17, 123, 172
AscI GGCGCGCC 2 cut(s) 97, 197
AspLEI GCGC 6 cut(s) 99, 101, 199, 201, 209, 214
AsuC2I CCSGG 4 cut(s) 149, 218, 309, 491
AsuHPI GGTGA 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 3 cut(s) 29, 135, 159
BccI CCATC 2 cut(s) 146, 151
BceAI ACGGC 2 cut(s) 261, 309
BciT130I CCWGG 2 cut(s) 450, 470
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 4 cut(s) 149, 218, 309, 491
BcoDI GTCTC 2 cut(s) 284, 305
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 4 cut(s) 18, 124, 173, 210
BlsI GCNGC 4 cut(s) 19, 125, 174, 211
Bme1390I CCNGG 6 cut(s) 149, 218, 309, 450, 470, 491
BmeRI GACNNNNNGTC 1 cut(s) 297
BmrFI CCNGG 6 cut(s) 149, 218, 309, 450, 470, 491
BpmI CTGGAG 2 cut(s) 103, 197
BpuMI CCSGG 4 cut(s) 149, 218, 309, 491
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 243
Bse118I RCCGGY 2 cut(s) 286, 511
Bse1I ACTGG 2 cut(s) 359, 444
BseBI CCWGG 2 cut(s) 450, 470
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 4 cut(s) 143, 157, 226, 486
BseLI CCNNNNNNNGG 2 cut(s) 208, 243
BseNI ACTGG 2 cut(s) 359, 444
BsePI GCGCGC 2 cut(s) 97, 197
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 3 cut(s) 29, 135, 159
BseYI CCCAGC 2 cut(s) 109, 185
BsgI GTGCAG 2 cut(s) 50, 275
Bsh1236I CGCG 4 cut(s) 99, 199, 207, 209
BshFI GGCC 3 cut(s) 358, 377, 424
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 9 cut(s) 149, 218, 244, 287, 309, 374, 421, 490, 512
BsiWI CGTACG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 208, 243
BsmAI GTCTC 2 cut(s) 284, 305
BsmBI CGTCTC 1 cut(s) 284
BsnI GGCC 3 cut(s) 358, 377, 424
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 2 cut(s) 10, 385
BspACI CCGC 5 cut(s) 39, 183, 209, 237, 274
BspANI GGCC 3 cut(s) 358, 377, 424
BspFNI CGCG 4 cut(s) 99, 199, 207, 209
BsrFI RCCGGY 2 cut(s) 286, 511
BsrI ACTGG 2 cut(s) 359, 444
BssAI RCCGGY 2 cut(s) 286, 511
BssECI CCNNGG 1 cut(s) 147
BssHII GCGCGC 2 cut(s) 97, 197
BssMI GATC 2 cut(s) 10, 385
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 450, 470
Bst4CI ACNGT 3 cut(s) 45, 79, 466
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 6 cut(s) 89, 99, 199, 288, 441, 513
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 4 cut(s) 143, 157, 226, 486
BstFNI CGCG 4 cut(s) 99, 199, 207, 209
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 6 cut(s) 99, 101, 199, 201, 209, 214
BstKTI GATC 2 cut(s) 13, 388
BstMAI GTCTC 2 cut(s) 284, 305
BstMBI GATC 2 cut(s) 10, 385
BstMWI GCNNNNNNNGC 1 cut(s) 253
BstNI CCWGG 2 cut(s) 450, 470
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 6 cut(s) 147, 216, 307, 448, 468, 489
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 4 cut(s) 99, 199, 207, 209
BstV1I GCAGC 3 cut(s) 29, 135, 159
BsuRI GGCC 3 cut(s) 358, 377, 424
BtsCI GGATG 4 cut(s) 143, 157, 226, 486
Cac8I GCNNGC 6 cut(s) 89, 99, 199, 288, 441, 513
CfoI GCGC 6 cut(s) 99, 101, 199, 201, 209, 214
Cfr10I RCCGGY 2 cut(s) 286, 511
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 80
CviAII CATG 2 cut(s) 322, 393
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 248
DpnI GATC 2 cut(s) 12, 387
DpnII GATC 2 cut(s) 10, 385
DriI GACNNNNNGTC 1 cut(s) 297
EaeI YGGCCR 3 cut(s) 356, 375, 422
Eam1105I GACNNNNNGTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 448, 468
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 2 cut(s) 325, 396
FaiI YATR 2 cut(s) 323, 394
FatI CATG 2 cut(s) 321, 392
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 18, 124, 173, 210
FokI GGATG 4 cut(s) 130, 164, 233, 473
Fsp4HI GCNGC 4 cut(s) 18, 124, 173, 210
GlaI GCGC 6 cut(s) 98, 100, 198, 200, 208, 213
GluI GCNGC 4 cut(s) 18, 124, 173, 210
GsaI CCCAGC 2 cut(s) 113, 189
GsuI CTGGAG 2 cut(s) 103, 197
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 358, 377, 424
HapII CCGG 9 cut(s) 149, 218, 244, 287, 309, 374, 421, 490, 512
HgaI GACGC 1 cut(s) 93
HhaI GCGC 6 cut(s) 99, 101, 199, 201, 209, 214
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 325, 396
Hin6I GCGC 6 cut(s) 97, 99, 197, 199, 207, 212
HinP1I GCGC 6 cut(s) 97, 99, 197, 199, 207, 212
HinfI GANTC 3 cut(s) 116, 179, 502
HpaII CCGG 9 cut(s) 149, 218, 244, 287, 309, 374, 421, 490, 512
HphI GGTGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 383, 408
Hpy99I CGWCG 4 cut(s) 87, 295, 364, 511
HpyAV CCTTC 4 cut(s) 314, 355, 447, 488
HpyCH4III ACNGT 3 cut(s) 45, 79, 466
HpyCH4IV ACGT 2 cut(s) 35, 233
HpyCH4V TGCA 2 cut(s) 31, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 253
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 35, 233
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 325, 396
HspAI GCGC 6 cut(s) 97, 99, 197, 199, 207, 212
KroI GCCGGC 2 cut(s) 286, 511
KroNI GCCGGC 2 cut(s) 288, 513
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 10, 385
LmnI GCTCC 2 cut(s) 25, 219
Lsp1109I GCAGC 3 cut(s) 29, 135, 159
MaeII ACGT 2 cut(s) 35, 233
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 12, 387
MboI GATC 2 cut(s) 10, 385
MhlI GDGCHC 1 cut(s) 484
MlyI GAGTC 2 cut(s) 110, 188
MnlI CCTC 5 cut(s) 33, 86, 112, 187, 213
MreI CGCCGGCG 2 cut(s) 286, 511
MroNI GCCGGC 2 cut(s) 286, 511
MseI TTAA 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 9 cut(s) 149, 218, 244, 287, 309, 374, 421, 490, 512
MspR9I CCNGG 6 cut(s) 149, 218, 309, 450, 470, 491
MteI GCGCNGCGC 1 cut(s) 210
MvaI CCWGG 2 cut(s) 450, 470
MvnI CGCG 4 cut(s) 99, 199, 207, 209
MwoI GCNNNNNNNGC 1 cut(s) 253
NaeI GCCGGC 2 cut(s) 288, 513
NciI CCSGG 4 cut(s) 149, 218, 309, 491
NdeII GATC 2 cut(s) 10, 385
NgoMIV GCCGGC 2 cut(s) 286, 511
NlaIII CATG 2 cut(s) 325, 396
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 325
PalAI GGCGCGCC 2 cut(s) 97, 197
PauI GCGCGC 2 cut(s) 97, 197
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 88
PdiI GCCGGC 2 cut(s) 288, 513
PfeI GAWTC 1 cut(s) 502
Pfl23II CGTACG 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 262
PfoI TCCNGGA 5 cut(s) 216, 307, 448, 468, 489
PkrI GCNGC 4 cut(s) 19, 125, 174, 211
PleI GAGTC 2 cut(s) 110, 187
PpsI GAGTC 2 cut(s) 110, 187
Psp6I CCWGG 2 cut(s) 448, 468
PspFI CCCAGC 2 cut(s) 109, 185
PspGI CCWGG 2 cut(s) 448, 468
PspLI CGTACG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 262
PteI GCGCGC 2 cut(s) 97, 197
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 18, 124, 173, 210
Sau3AI GATC 2 cut(s) 10, 385
SchI GAGTC 2 cut(s) 110, 188
ScrFI CCNGG 6 cut(s) 149, 218, 309, 450, 470, 491
SduI GDGCHC 1 cut(s) 484
SetI ASST 5 cut(s) 22, 38, 128, 174, 236
SfcI CTRYAG 1 cut(s) 314
SgrAI CRCCGGYG 2 cut(s) 286, 511
SgsI GGCGCGCC 2 cut(s) 97, 197
SsiI CCGC 5 cut(s) 39, 183, 209, 237, 274
StyD4I CCNGG 6 cut(s) 147, 216, 307, 448, 468, 489
TaaI ACNGT 3 cut(s) 45, 79, 466
TaiI ACGT 2 cut(s) 38, 236
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 3 cut(s) 17, 123, 172
Tsp45I GTSAC 1 cut(s) 73
TspGWI ACGGA 3 cut(s) 256, 393, 495
Tth111I GACNNNGTC 1 cut(s) 262
XceI RCATGY 1 cut(s) 325
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.