Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

18536010 .. 18537793

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23892.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCGGATTTCTCTCCGTTCGCCACCGTACCGTGCCGGCGAGGGCGCGCCTCCACCCCAGCGGACTCCAGCAAGTTTGCCAAATTCCAGTTTTCCGGTCAGATCACCCAAAACTTCAAACAAAGTCAACCTGGCCGAAAAACTGGAATTCGGCGGACTCGCCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTCCGCTGGAGTAGAGGCGCACCCTCATCGGTGCCGTACGGTGGCAAAAAGAGGGATGACACACAGTATGCTGTTATTGTCACAGTTGAGTTCGGATGATAGTGGCAGCAGTTCACCTGTTCTAGAAAGTGGAAAGACGAAGGATCATGTTTTGCCAATGCTTAGCTTTTCCTGCATCATGGCGTCCACGATTCCCATGAATAATTTCTCAGCTGCTAACAAGCTTGGAGAAGTAGGTTATGGGCCTGTTTATAAGGTGTTTGTTACCTTGTACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

158

Amino Acids

16.78

Weight (kDa)

9.55

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	4, 61, 153, 198
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	82, 146
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	3 cut(s)	29, 232, 467
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	187, 360, 407, 418
AluI	AGCT	4 cut(s)	187, 360, 407, 418
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	2 cut(s)	132, 437
ApeKI	GCWGC	3 cut(s)	187, 300, 407
ApoI	RAATTY	2 cut(s)	82, 146
AscI	GGCGCGCC	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	3 cut(s)	47, 49, 214
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	96, 300
BanI	GGYRCC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	174, 312, 394
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	3 cut(s)	188, 301, 408
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	3 cut(s)	189, 302, 409
Bme1390I	CCNGG	2 cut(s)	131, 163
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	131, 163
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	3 cut(s)	51, 212, 222
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	87, 147
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	172, 255, 295
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	2 cut(s)	87, 147
BsePI	GCGCGC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	174, 312, 394
BseYI	CCCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	134, 439
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	36, 95, 162
BsiWI	CGTACG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	235
BsnI	GGCC	2 cut(s)	134, 439
Bsp143I	GATC	2 cut(s)	101, 337
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	4 cut(s)	4, 61, 153, 198
BspANI	GGCC	2 cut(s)	134, 439
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	87, 147
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	162
BssHII	GCGCGC	1 cut(s)	45
BssMI	GATC	2 cut(s)	101, 337
BssNI	GRCGYC	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	5 cut(s)	27, 32, 235, 260, 279
BstACI	GRCGYC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	37, 47
BstDEI	CTNAG	2 cut(s)	356, 403
BstF5I	GGATG	3 cut(s)	172, 255, 295
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	3 cut(s)	47, 49, 214
BstKTI	GATC	2 cut(s)	104, 340
BstMBI	GATC	2 cut(s)	101, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	129, 161
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	174, 312, 394
BsuRI	GGCC	2 cut(s)	134, 439
BtsCI	GGATG	3 cut(s)	172, 255, 295
Cac8I	GCNNGC	2 cut(s)	37, 47
CfoI	GCGC	3 cut(s)	47, 49, 214
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	437
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	28, 231, 466
CviAII	CATG	3 cut(s)	341, 373, 391
CviJI	RGCY	6 cut(s)	134, 187, 360, 407, 418, 439
CviKI_1	RGCY	6 cut(s)	134, 187, 360, 407, 418, 439
CviQI	GTAC	3 cut(s)	28, 231, 466
DdeI	CTNAG	2 cut(s)	356, 403
DpnI	GATC	2 cut(s)	103, 339
DpnII	GATC	2 cut(s)	101, 337
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	344, 376, 394
FaiI	YATR	6 cut(s)	263, 342, 374, 392, 435, 447
FatI	CATG	3 cut(s)	340, 372, 390
Fnu4HI	GCNGC	3 cut(s)	188, 301, 408
FokI	GGATG	3 cut(s)	179, 262, 302
Fsp4HI	GCNGC	3 cut(s)	188, 301, 408
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	3 cut(s)	46, 48, 213
GluI	GCNGC	3 cut(s)	188, 301, 408
GsaI	CCCAGC	1 cut(s)	61
GsuI	CTGGAG	3 cut(s)	51, 212, 222
HaeIII	GGCC	2 cut(s)	134, 439
HapII	CCGG	3 cut(s)	36, 95, 162
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	3 cut(s)	47, 49, 214
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	344, 376, 394
Hin6I	GCGC	3 cut(s)	45, 47, 212
HinP1I	GCGC	3 cut(s)	45, 47, 212
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	4 cut(s)	64, 156, 194, 385
HpaII	CCGG	3 cut(s)	36, 95, 162
HphI	GGTGA	2 cut(s)	96, 300
Hpy166II	GTNNAC	3 cut(s)	127, 308, 381
Hpy188I	TCNGA	2 cut(s)	101, 289
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	3 cut(s)	127, 308, 381
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	5 cut(s)	27, 32, 235, 260, 279
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	356, 403
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	3 cut(s)	344, 376, 394
HspAI	GCGC	3 cut(s)	45, 47, 212
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	101, 337
Lsp1109I	GCAGC	3 cut(s)	174, 312, 394
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	273, 457
MalI	GATC	2 cut(s)	103, 339
MboI	GATC	2 cut(s)	101, 337
MluCI	AATT	3 cut(s)	82, 146, 397
MlyI	GAGTC	3 cut(s)	58, 150, 203
MnlI	CCTC	5 cut(s)	34, 60, 202, 228, 239
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	398
MspA1I	CMGCKG	3 cut(s)	61, 200, 407
MspI	CCGG	3 cut(s)	36, 95, 162
MspR9I	CCNGG	2 cut(s)	131, 163
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	366
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	101, 337
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	344, 376, 394
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	273
PalAI	GGCGCGCC	1 cut(s)	45
PauI	GCGCGC	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	385
Pfl23II	CGTACG	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	189, 302, 409
PleI	GAGTC	3 cut(s)	58, 150, 202
PpsI	GAGTC	3 cut(s)	58, 150, 202
PsiI	TTATAA	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	129
PspLI	CGTACG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	437
PteI	GCGCGC	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	3 cut(s)	29, 232, 467
RsaNI	GTAC	3 cut(s)	28, 231, 466
SatI	GCNGC	3 cut(s)	188, 301, 408
Sau3AI	GATC	2 cut(s)	101, 337
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	3 cut(s)	58, 150, 203
ScrFI	CCNGG	2 cut(s)	131, 163
SetI	ASST	9 cut(s)	132, 189, 313, 362, 409, 420, 433, 453, 464
SfaNI	GCATC	1 cut(s)	378
SgsI	GGCGCGCC	1 cut(s)	45
Sse9I	AATT	3 cut(s)	82, 146, 397
SsiI	CCGC	4 cut(s)	4, 61, 153, 198
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	129, 161
TaaI	ACNGT	5 cut(s)	27, 32, 235, 260, 279
TasI	AATT	3 cut(s)	82, 146, 397
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	3 cut(s)	187, 300, 407
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	5
XapI	RAATTY	2 cut(s)	82, 146
XbaI	TCTAGA	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.