FvH4_1g22371

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000094
Physical Location & Seq
Reverse (-)
14274859 .. 14276733
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22371.t1

Sequence Viewer

Length: 1875 bp
ATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGTCGCATGAGGGGAATTATCCTACTGATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGCAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAATGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAGGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAAATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTAAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAGAACCTATCTTTGATGGAATTTGCCTATAACAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCCAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAGGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAACAAATGATGCAGCAGTATCCGTATCTCTTCGGAGGACATGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

625

Amino Acids

72.41

Weight (kDa)

9.25

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 3 - 79 1.6e-24 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 4 - 49 6.1e-11 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 194 - 251 1.4e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 483 - 547 2e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1732
Acc36I ACCTGC 1 cut(s) 1732
Acc65I GGTACC 1 cut(s) 1064
AccB1I GGYRCC 2 cut(s) 1064, 1246
AciI CCGC 7 cut(s) 89, 341, 445, 507, 950, 1412, 1766
AclWI GGATC 1 cut(s) 1643
AcoI YGGCCR 1 cut(s) 686
AcsI RAATTY 3 cut(s) 1034, 1205, 1436
AcuI CTGAAG 3 cut(s) 753, 1034, 1063
AcyI GRCGYC 1 cut(s) 1247
AfaI GTAC 2 cut(s) 850, 1066
AfiI CCNNNNNNNGG 2 cut(s) 858, 1481
AflIII ACRYGT 1 cut(s) 1864
AgeI ACCGGT 1 cut(s) 1714
AgsI TTSAA 5 cut(s) 43, 592, 670, 1436, 1442
AjnI CCWGG 2 cut(s) 259, 1598
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
Alw21I GWGCWC 2 cut(s) 957, 1048
Alw26I GTCTC 2 cut(s) 109, 196
AlwI GGATC 1 cut(s) 1643
Ama87I CYCGRG 1 cut(s) 1519
AoxI GGCC 4 cut(s) 422, 686, 1324, 1531
ApeKI GCWGC 9 cut(s) 4, 86, 509, 632, 710, 752, 1055, 1663, 1837
ApoI RAATTY 3 cut(s) 1034, 1205, 1436
ArsI GACNNNNNNTTYG 4 cut(s) 1007, 1039, 1678, 1710
AsiGI ACCGGT 1 cut(s) 1714
Asp700I GAANNNNTTC 1 cut(s) 1716
Asp718I GGTACC 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 1249
AspS9I GGNCC 4 cut(s) 811, 1015, 1325, 1532
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 4 cut(s) 811, 886, 889, 1460
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 1519
AvaII GGWCC 2 cut(s) 811, 1015
BalI TGGCCA 1 cut(s) 688
BanI GGYRCC 2 cut(s) 1064, 1246
BanII GRGCYC 2 cut(s) 957, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 1614, 1646
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 957, 1048
BbvI GCAGC 9 cut(s) 16, 98, 521, 619, 722, 739, 1067, 1650, 1849
BccI CCATC 8 cut(s) 207, 211, 322, 478, 530, 851, 1100, 1195
BceAI ACGGC 1 cut(s) 769
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 261, 1600
BciVI GTATCC 3 cut(s) 1596, 1633, 1854
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 2 cut(s) 109, 196
BfaI CTAG 2 cut(s) 33, 1233
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 1250
BfuAI ACCTGC 1 cut(s) 1732
BfuI GTATCC 3 cut(s) 1596, 1633, 1854
BglII AGATCT 1 cut(s) 1429
BlpI GCTNAGC 1 cut(s) 1514
Bme1390I CCNGG 3 cut(s) 261, 642, 1600
Bme18I GGWCC 2 cut(s) 811, 1015
BmeT110I CYCGRG 1 cut(s) 1519
BmgT120I GGNCC 4 cut(s) 811, 1015, 1325, 1532
BmiI GGNNCC 8 cut(s) 133, 505, 812, 1016, 1017, 1066, 1248, 1713
BmrFI CCNGG 3 cut(s) 261, 642, 1600
BmsI GCATC 2 cut(s) 274, 1824
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 1362, 1394
BpmI CTGGAG 2 cut(s) 98, 1572
Bpu10I CCTNAGC 1 cut(s) 1748
Bpu1102I GCTNAGC 1 cut(s) 1514
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 3 cut(s) 89, 800, 1364
BpuMI CCSGG 1 cut(s) 642
Bsa29I ATCGAT 1 cut(s) 1573
BsaHI GRCGYC 1 cut(s) 1247
BsaJI CCNNGG 3 cut(s) 822, 1475, 1520
BsaWI WCCGGW 1 cut(s) 1714
BsaXI ACNNNNNCTCC 5 cut(s) 1130, 1160, 1261, 1291, 1851
Bsc4I CCNNNNNNNGG 2 cut(s) 858, 1481
Bse118I RCCGGY 1 cut(s) 1714
Bse1I ACTGG 4 cut(s) 408, 425, 797, 917
BseBI CCWGG 2 cut(s) 261, 1600
BseCI ATCGAT 1 cut(s) 1573
BseDI CCNNGG 3 cut(s) 822, 1475, 1520
BseGI GGATG 5 cut(s) 222, 256, 637, 1093, 1420
BseLI CCNNNNNNNGG 2 cut(s) 858, 1481
BseMII CTCAG 2 cut(s) 1112, 1403
BseNI ACTGG 4 cut(s) 408, 425, 797, 917
BseXI GCAGC 9 cut(s) 16, 98, 521, 619, 722, 739, 1067, 1650, 1849
BsgI GTGCAG 1 cut(s) 888
Bsh1285I CGRYCG 1 cut(s) 1732
BshFI GGCC 4 cut(s) 424, 688, 1326, 1533
BshNI GGYRCC 2 cut(s) 1064, 1246
BshTI ACCGGT 1 cut(s) 1714
BshVI ATCGAT 1 cut(s) 1573
BsiEI CGRYCG 1 cut(s) 1732
BsiHKAI GWGCWC 2 cut(s) 957, 1048
BsiHKCI CYCGRG 1 cut(s) 1519
BsiSI CCGG 2 cut(s) 641, 1715
BslFI GGGAC 3 cut(s) 553, 824, 1028
BslI CCNNNNNNNGG 2 cut(s) 858, 1481
BsmAI GTCTC 2 cut(s) 109, 196
BsmFI GGGAC 3 cut(s) 553, 824, 1028
BsnI GGCC 4 cut(s) 424, 688, 1326, 1533
BsoBI CYCGRG 1 cut(s) 1519
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 957, 1048
Bsp143I GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
Bsp1720I GCTNAGC 1 cut(s) 1514
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 7 cut(s) 89, 341, 445, 507, 950, 1412, 1766
BspANI GGCC 4 cut(s) 424, 688, 1326, 1533
BspCNI CTCAG 2 cut(s) 1111, 1402
BspDI ATCGAT 1 cut(s) 1573
BspLI GGNNCC 8 cut(s) 133, 505, 812, 1016, 1017, 1066, 1248, 1713
BspMI ACCTGC 1 cut(s) 1732
BspPI GGATC 1 cut(s) 1643
BspQI GCTCTTC 1 cut(s) 1053
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 2 cut(s) 1064, 1246
BsrFI RCCGGY 1 cut(s) 1714
BsrI ACTGG 4 cut(s) 408, 425, 797, 917
BssAI RCCGGY 1 cut(s) 1714
BssECI CCNNGG 3 cut(s) 822, 1475, 1520
BssMI GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
BssNI GRCGYC 1 cut(s) 1247
BssT1I CCWWGG 2 cut(s) 822, 1475
Bst2UI CCWGG 2 cut(s) 261, 1600
Bst4CI ACNGT 2 cut(s) 456, 869
Bst6I CTCTTC 8 cut(s) 526, 579, 587, 692, 1053, 1082, 1701, 1859
BstACI GRCGYC 1 cut(s) 1247
BstAPI GCANNNNNTGC 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 84, 360, 1283
BstDEI CTNAG 5 cut(s) 290, 1098, 1389, 1514, 1748
BstDSI CCRYGG 1 cut(s) 822
BstENI CCTNNNNNAGG 1 cut(s) 1479
BstF5I GGATG 5 cut(s) 222, 256, 637, 1093, 1420
BstH2I RGCGCY 1 cut(s) 1250
BstHHI GCGC 1 cut(s) 1249
BstKTI GATC 7 cut(s) 13, 76, 157, 517, 1432, 1651, 1680
BstMAI GTCTC 2 cut(s) 109, 196
BstMBI GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
BstMCI CGRYCG 1 cut(s) 1732
BstMWI GCNNNNNNNGC 5 cut(s) 404, 632, 1052, 1510, 1669
BstNI CCWGG 2 cut(s) 261, 1600
BstNSI RCATGY 1 cut(s) 1868
BstSCI CCNGG 3 cut(s) 259, 640, 1598
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 9 cut(s) 16, 98, 521, 619, 722, 739, 1067, 1650, 1849
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 1429
BstYI RGATCY 1 cut(s) 1429
Bsu15I ATCGAT 1 cut(s) 1573
BsuI GTATCC 3 cut(s) 1596, 1633, 1854
BsuRI GGCC 4 cut(s) 424, 688, 1326, 1533
BsuTUI ATCGAT 1 cut(s) 1573
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 5 cut(s) 222, 256, 637, 1093, 1420
BtsI GCAGTG 2 cut(s) 1083, 1280
BtsIMutI CAGTG 6 cut(s) 235, 387, 804, 924, 1083, 1280
BveI ACCTGC 1 cut(s) 1732
Cac8I GCNNGC 3 cut(s) 84, 360, 1283
CfoI GCGC 1 cut(s) 1249
Cfr10I RCCGGY 1 cut(s) 1714
Cfr13I GGNCC 4 cut(s) 811, 1015, 1325, 1532
ClaI ATCGAT 1 cut(s) 1573
Csp6I GTAC 2 cut(s) 849, 1065
CspAI ACCGGT 1 cut(s) 1714
CviQI GTAC 2 cut(s) 849, 1065
DdeI CTNAG 5 cut(s) 290, 1098, 1389, 1514, 1748
DinI GGCGCC 1 cut(s) 1248
DpnI GATC 7 cut(s) 12, 75, 156, 516, 1431, 1650, 1679
DpnII GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
DraI TTTAAA 1 cut(s) 553
EaeI YGGCCR 1 cut(s) 686
Eam1104I CTCTTC 8 cut(s) 526, 579, 587, 692, 1053, 1082, 1701, 1859
EarI CTCTTC 8 cut(s) 526, 579, 587, 692, 1053, 1082, 1701, 1859
EciI GGCGGA 1 cut(s) 965
Ecl136II GAGCTC 2 cut(s) 955, 1046
Eco130I CCWWGG 2 cut(s) 822, 1475
Eco24I GRGCYC 2 cut(s) 957, 1048
Eco47I GGWCC 2 cut(s) 811, 1015
Eco53kI GAGCTC 2 cut(s) 955, 1046
Eco57I CTGAAG 3 cut(s) 753, 1034, 1063
Eco88I CYCGRG 1 cut(s) 1519
EcoICRI GAGCTC 2 cut(s) 955, 1046
EcoNI CCTNNNNNAGG 1 cut(s) 1479
EcoO109I RGGNCCY 1 cut(s) 1015
EcoRII CCWGG 2 cut(s) 259, 1598
EcoT14I CCWWGG 2 cut(s) 822, 1475
EcoT38I GRGCYC 2 cut(s) 957, 1048
EgeI GGCGCC 1 cut(s) 1248
EheI GGCGCC 1 cut(s) 1248
ErhI CCWWGG 2 cut(s) 822, 1475
FaqI GGGAC 3 cut(s) 553, 824, 1028
FauI CCCGC 2 cut(s) 438, 1773
FauNDI CATATG 1 cut(s) 628
FokI GGATG 5 cut(s) 229, 243, 624, 1080, 1427
FriOI GRGCYC 2 cut(s) 957, 1048
FspBI CTAG 2 cut(s) 33, 1233
GlaI GCGC 1 cut(s) 1248
GsuI CTGGAG 2 cut(s) 98, 1572
HaeII RGCGCY 1 cut(s) 1250
HaeIII GGCC 4 cut(s) 424, 688, 1326, 1533
HapII CCGG 2 cut(s) 641, 1715
HhaI GCGC 1 cut(s) 1249
Hin1I GRCGYC 1 cut(s) 1247
Hin6I GCGC 1 cut(s) 1247
HinP1I GCGC 1 cut(s) 1247
HindIII AAGCTT 1 cut(s) 1511
HinfI GANTC 8 cut(s) 163, 464, 541, 891, 995, 1377, 1723, 1817
HpaII CCGG 2 cut(s) 641, 1715
HphI GGTGA 4 cut(s) 811, 886, 889, 1460
Hpy166II GTNNAC 1 cut(s) 180
Hpy188III TCNNGA 9 cut(s) 77, 771, 992, 1013, 1381, 1433, 1462, 1589, 1727
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 4 cut(s) 664, 777, 918, 1662
HpyCH4III ACNGT 2 cut(s) 456, 869
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 632, 1052, 1510, 1669
HpyF3I CTNAG 5 cut(s) 290, 1098, 1389, 1514, 1748
Hsp92I GRCGYC 1 cut(s) 1247
HspAI GCGC 1 cut(s) 1247
KasI GGCGCC 1 cut(s) 1246
KflI GGGWCCC 1 cut(s) 1015
KpnI GGTACC 1 cut(s) 1068
Kzo9I GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 6 cut(s) 79, 131, 503, 952, 1043, 1738
Lsp1109I GCAGC 9 cut(s) 16, 98, 521, 619, 722, 739, 1067, 1650, 1849
LweI GCATC 2 cut(s) 274, 1824
MaeI CTAG 2 cut(s) 33, 1233
MaeIII GTNAC 1 cut(s) 1342
MalI GATC 7 cut(s) 12, 75, 156, 516, 1431, 1650, 1679
MboI GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 1429
MhlI GDGCHC 2 cut(s) 957, 1048
MlsI TGGCCA 1 cut(s) 688
MluNI TGGCCA 1 cut(s) 688
Mly113I GGCGCC 1 cut(s) 1247
MlyI GAGTC 4 cut(s) 172, 535, 885, 1371
MmeI TCCRAC 1 cut(s) 1274
Mox20I TGGCCA 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 1716
MscI TGGCCA 1 cut(s) 688
MseI TTAA 7 cut(s) 195, 224, 552, 1148, 1334, 1359, 1873
MslI CAYNNNNRTG 3 cut(s) 653, 821, 1241
Msp20I TGGCCA 1 cut(s) 688
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 2 cut(s) 641, 1715
MspR9I CCNGG 3 cut(s) 261, 642, 1600
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 2 cut(s) 261, 1600
MwoI GCNNNNNNNGC 5 cut(s) 404, 632, 1052, 1510, 1669
NarI GGCGCC 1 cut(s) 1247
NciI CCSGG 1 cut(s) 642
NcoI CCATGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 628
NdeII GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
NlaIV GGNNCC 8 cut(s) 133, 505, 812, 1016, 1017, 1066, 1248, 1713
NspI RCATGY 1 cut(s) 1868
NspV TTCGAA 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 1732
PciI ACATGT 1 cut(s) 1864
PciSI GCTCTTC 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 1716
PfeI GAWTC 4 cut(s) 464, 995, 1723, 1817
PfoI TCCNGGA 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 1714
PleI GAGTC 4 cut(s) 171, 535, 885, 1371
PluTI GGCGCC 1 cut(s) 1250
PpsI GAGTC 4 cut(s) 171, 535, 885, 1371
PpuMI RGGWCCY 1 cut(s) 1015
PscI ACATGT 1 cut(s) 1864
Psp124BI GAGCTC 2 cut(s) 957, 1048
Psp5II RGGWCCY 1 cut(s) 1015
Psp6I CCWGG 2 cut(s) 259, 1598
PspGI CCWGG 2 cut(s) 259, 1598
PspN4I GGNNCC 8 cut(s) 133, 505, 812, 1016, 1017, 1066, 1248, 1713
PspPI GGNCC 4 cut(s) 811, 1015, 1325, 1532
PspPPI RGGWCCY 1 cut(s) 1015
PsuI RGATCY 1 cut(s) 1429
RsaI GTAC 2 cut(s) 850, 1066
RsaNI GTAC 2 cut(s) 849, 1065
RseI CAYNNNNRTG 3 cut(s) 653, 821, 1241
SacI GAGCTC 2 cut(s) 957, 1048
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 7 cut(s) 195, 224, 552, 1148, 1334, 1359, 1873
Sau3AI GATC 7 cut(s) 10, 73, 154, 514, 1429, 1648, 1677
Sau96I GGNCC 4 cut(s) 811, 1015, 1325, 1532
SchI GAGTC 4 cut(s) 172, 535, 885, 1371
ScrFI CCNGG 3 cut(s) 261, 642, 1600
SduI GDGCHC 2 cut(s) 957, 1048
SfaNI GCATC 2 cut(s) 274, 1824
SfcI CTRYAG 1 cut(s) 363
SfoI GGCGCC 1 cut(s) 1248
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 2 cut(s) 811, 1015
SmiMI CAYNNNNRTG 3 cut(s) 653, 821, 1241
SmlI CTYRAG 3 cut(s) 104, 779, 1379
SmoI CTYRAG 3 cut(s) 104, 779, 1379
SsiI CCGC 7 cut(s) 89, 341, 445, 507, 950, 1412, 1766
SspDI GGCGCC 1 cut(s) 1246
SspMI CTAG 2 cut(s) 33, 1233
SstI GAGCTC 2 cut(s) 957, 1048
StyD4I CCNGG 3 cut(s) 259, 640, 1598
StyI CCWWGG 2 cut(s) 822, 1475
TaaI ACNGT 2 cut(s) 456, 869
TaqI TCGA 7 cut(s) 13, 295, 478, 497, 1021, 1573, 1728
TaqII GACCGA 1 cut(s) 1746
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 4 cut(s) 464, 995, 1723, 1817
Tru1I TTAA 7 cut(s) 195, 224, 552, 1148, 1334, 1359, 1873
Tru9I TTAA 7 cut(s) 195, 224, 552, 1148, 1334, 1359, 1873
TscAI CASTG 6 cut(s) 235, 387, 804, 924, 1090, 1280
TseI GCWGC 9 cut(s) 4, 86, 509, 632, 710, 752, 1055, 1663, 1837
TspDTI ATGAA 9 cut(s) 404, 597, 710, 971, 981, 1082, 1314, 1607, 1719
TspGWI ACGGA 2 cut(s) 1409, 1836
TspRI CASTG 6 cut(s) 235, 387, 804, 924, 1090, 1280
VpaK11BI GGWCC 2 cut(s) 811, 1015
XagI CCTNNNNNAGG 1 cut(s) 1479
XapI RAATTY 3 cut(s) 1034, 1205, 1436
XceI RCATGY 1 cut(s) 1868
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmnI GAANNNNTTC 1 cut(s) 1716
XspI CTAG 2 cut(s) 33, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.