RchiOBHm_Chr5g0009611

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000094
Physical Location & Seq
Reverse (-)
6364332 .. 6372434
8103 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29048

Sequence Viewer

Length: 1029 bp
ATGGAGAGAGTATTTGAGTCCTTGGGTTGTCCAGCTACTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACGGGGATGCATGGCTTTGGTGGCAGGGTACCAGGAATATGGGTTTTGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAGGCATCCCAGCATCGTCTCCGATTTGAGTTCATGCAGTTGAAGCAGACTGAAGAGATGACCGTGTTACAGTATGAGGAGCGTTTCATTGCTTTATCTCGGTTTGCCCCTGAGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGTCTCCTACCTGTATATCGAGATTGGTTGGCGCCTCACGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCTAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGTTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACAGGTAGGAGACAGTCCAGGGGTGGCACTGCTAGTTCGAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGAGACTATCCCCAGTGTACTACTTGTGGTAGACACCATGCAGGTCCGTGTCTGGCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGAGAATGCCCTCAGTTGACCCAGGGAGTCTTCACTACTACTAGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTACTAGTTCGGGTTCTCATGGCAGTTTGTCAGGCAGGAACAGCACTCAGCAGGGTCGTGGACAGAGAGGGCGTCCAGTGACCCAGGTCCGTCTTCATGCTATGACCCAGCAGGAGGGTCGAACTGCACCGAACGTCATTATGGGACGTACTGAGCCCTCGAGCGAGGAGGACACAGACAGGCAGCAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

342

Amino Acids

38.06

Weight (kDa)

9.52

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 22 - 114 1e-15 Retrotransposon gag protein
Ty3_capsid PF19259 23 - 140 8.2e-09 Ty3 transposon capsid-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 707
Acc36I ACCTGC 2 cut(s) 692, 707
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 2 cut(s) 98, 364
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 3 cut(s) 526, 646, 691
AciI CCGC 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 742
AcuI CTGAAG 2 cut(s) 249, 559
AcyI GRCGYC 2 cut(s) 365, 907
AfaI GTAC 4 cut(s) 100, 170, 679, 985
AfiI CCNNNNNNNGG 7 cut(s) 73, 135, 292, 448, 470, 471, 949
AgsI TTSAA 3 cut(s) 148, 220, 313
AhlI ACTAGT 2 cut(s) 803, 839
AjnI CCWGG 5 cut(s) 101, 583, 608, 783, 918
AluBI AGCT 3 cut(s) 35, 395, 549
AluI AGCT 3 cut(s) 35, 395, 549
Alw26I GTCTC 4 cut(s) 200, 341, 595, 657
Ama87I CYCGRG 1 cut(s) 994
AoxI GGCC 3 cut(s) 473, 581, 742
ApeKI GCWGC 2 cut(s) 404, 1018
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 4 cut(s) 461, 473, 704, 922
AvaI CYCGRG 1 cut(s) 994
AvaII GGWCC 3 cut(s) 461, 704, 922
BalI TGGCCA 1 cut(s) 744
BanI GGYRCC 2 cut(s) 98, 364
BanII GRGCYC 1 cut(s) 993
BbsI GAAGAC 2 cut(s) 784, 920
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 484
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 5 cut(s) 103, 585, 610, 785, 920
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 4 cut(s) 200, 341, 595, 657
BcuI ACTAGT 2 cut(s) 803, 839
BfaI CTAG 8 cut(s) 39, 68, 423, 495, 546, 624, 804, 840
BfmI CTRYAG 1 cut(s) 757
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 2 cut(s) 692, 707
BisI GCNGC 2 cut(s) 405, 1019
BlsI GCNGC 2 cut(s) 406, 1020
Bme1390I CCNGG 5 cut(s) 103, 585, 610, 785, 920
Bme18I GGWCC 3 cut(s) 461, 704, 922
BmeT110I CYCGRG 1 cut(s) 994
BmgT120I GGNCC 4 cut(s) 461, 473, 704, 922
BmiI GGNNCC 6 cut(s) 48, 100, 366, 439, 463, 474
BmrFI CCNGG 5 cut(s) 103, 585, 610, 785, 920
BmrI ACTGGG 2 cut(s) 459, 667
BmsI GCATC 4 cut(s) 67, 191, 199, 518
BmuI ACTGGG 2 cut(s) 459, 667
BoxI GACNNNNGTC 1 cut(s) 920
BpiI GAAGAC 2 cut(s) 784, 920
BsaHI GRCGYC 2 cut(s) 365, 907
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 6 cut(s) 21, 584, 609, 783, 784, 918
Bsc4I CCNNNNNNNGG 7 cut(s) 73, 135, 292, 448, 470, 471, 949
Bse1I ACTGG 5 cut(s) 465, 673, 736, 745, 911
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 5 cut(s) 103, 585, 610, 785, 920
BseDI CCNNGG 6 cut(s) 21, 584, 609, 783, 784, 918
BseGI GGATG 2 cut(s) 82, 182
BseLI CCNNNNNNNGG 7 cut(s) 73, 135, 292, 448, 470, 471, 949
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 4 cut(s) 279, 788, 896, 978
BseNI ACTGG 5 cut(s) 465, 673, 736, 745, 911
BseRI GAGGAG 2 cut(s) 269, 1016
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 2 cut(s) 186, 942
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 3 cut(s) 475, 583, 744
BshNI GGYRCC 2 cut(s) 98, 364
BsiHKCI CYCGRG 1 cut(s) 994
BslFI GGGAC 4 cut(s) 447, 582, 739, 993
BslI CCNNNNNNNGG 7 cut(s) 73, 135, 292, 448, 470, 471, 949
BsmAI GTCTC 4 cut(s) 200, 341, 595, 657
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 4 cut(s) 447, 582, 739, 993
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 3 cut(s) 475, 583, 744
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 994
Bsp1286I GDGCHC 1 cut(s) 993
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 459
BspANI GGCC 3 cut(s) 475, 583, 744
BspCNI CTCAG 4 cut(s) 280, 787, 895, 979
BspLI GGNNCC 6 cut(s) 48, 100, 366, 439, 463, 474
BspMI ACCTGC 2 cut(s) 692, 707
BspT107I GGYRCC 2 cut(s) 98, 364
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 5 cut(s) 465, 673, 736, 745, 911
BssECI CCNNGG 6 cut(s) 21, 584, 609, 783, 784, 918
BssMI GATC 1 cut(s) 319
BssNI GRCGYC 2 cut(s) 365, 907
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 5 cut(s) 103, 585, 610, 785, 920
Bst4CI ACNGT 4 cut(s) 241, 249, 437, 606
Bst6I CTCTTC 2 cut(s) 135, 225
BstACI GRCGYC 2 cut(s) 365, 907
BstDEI CTNAG 5 cut(s) 288, 480, 774, 882, 987
BstF5I GGATG 2 cut(s) 82, 182
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 4 cut(s) 200, 341, 595, 657
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 91, 220, 401, 876
BstNI CCWGG 5 cut(s) 103, 585, 610, 785, 920
BstPAI GACNNNNGTC 1 cut(s) 920
BstSCI CCNGG 5 cut(s) 101, 583, 608, 783, 918
BstSFI CTRYAG 1 cut(s) 757
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 784, 920
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuRI GGCC 3 cut(s) 475, 583, 744
BtsCI GGATG 2 cut(s) 82, 182
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 5 cut(s) 618, 680, 743, 752, 918
BveI ACCTGC 2 cut(s) 692, 707
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 461, 473, 704, 922
CseI GACGC 2 cut(s) 579, 896
Csp6I GTAC 4 cut(s) 99, 169, 678, 984
CviAII CATG 6 cut(s) 81, 130, 211, 698, 854, 932
CviQI GTAC 4 cut(s) 99, 169, 678, 984
DdeI CTNAG 5 cut(s) 288, 480, 774, 882, 987
DinI GGCGCC 1 cut(s) 366
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 135, 225
EarI CTCTTC 2 cut(s) 135, 225
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 993
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 428
Eco47I GGWCC 3 cut(s) 461, 704, 922
Eco57I CTGAAG 2 cut(s) 249, 559
Eco88I CYCGRG 1 cut(s) 994
EcoRII CCWGG 5 cut(s) 101, 583, 608, 783, 918
EcoRV GATATC 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 993
EgeI GGCGCC 1 cut(s) 366
EheI GGCGCC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 6 cut(s) 84, 133, 214, 701, 857, 935
FaqI GGGAC 4 cut(s) 447, 582, 739, 993
FatI CATG 6 cut(s) 80, 129, 210, 697, 853, 931
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 3 cut(s) 526, 646, 691
Fnu4HI GCNGC 2 cut(s) 405, 1019
FokI GGATG 2 cut(s) 89, 169
FriOI GRGCYC 1 cut(s) 993
Fsp4HI GCNGC 2 cut(s) 405, 1019
FspBI CTAG 8 cut(s) 39, 68, 423, 495, 546, 624, 804, 840
GlaI GCGC 1 cut(s) 366
GluI GCNGC 2 cut(s) 405, 1019
GsaI CCCAGC 2 cut(s) 190, 946
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 3 cut(s) 475, 583, 744
HgaI GACGC 2 cut(s) 579, 896
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 2 cut(s) 365, 907
Hin1II CATG 6 cut(s) 84, 133, 214, 701, 857, 935
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HinfI GANTC 4 cut(s) 17, 542, 655, 789
Hpy166II GTNNAC 6 cut(s) 527, 647, 678, 692, 780, 896
Hpy188I TCNGA 6 cut(s) 200, 381, 541, 660, 810, 822
Hpy188III TCNNGA 5 cut(s) 353, 371, 431, 441, 577
Hpy8I GTNNAC 6 cut(s) 527, 647, 678, 692, 780, 896
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 4 cut(s) 241, 249, 437, 606
HpyCH4IV ACGT 2 cut(s) 969, 982
HpyCH4V TGCA 5 cut(s) 80, 214, 509, 701, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 220, 401, 876
HpyF3I CTNAG 5 cut(s) 288, 480, 774, 882, 987
HpySE526I ACGT 2 cut(s) 969, 982
Hsp92I GRCGYC 2 cut(s) 365, 907
Hsp92II CATG 6 cut(s) 84, 133, 214, 701, 857, 935
HspAI GCGC 1 cut(s) 365
KasI GGCGCC 1 cut(s) 364
KpnI GGTACC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 4 cut(s) 67, 191, 199, 518
MaeI CTAG 8 cut(s) 39, 68, 423, 495, 546, 624, 804, 840
MaeII ACGT 2 cut(s) 969, 982
MaeIII GTNAC 4 cut(s) 243, 731, 752, 913
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 4 cut(s) 152, 242, 784, 920
MhlI GDGCHC 1 cut(s) 993
MlsI TGGCCA 1 cut(s) 744
MluCI AATT 1 cut(s) 486
MluNI TGGCCA 1 cut(s) 744
Mly113I GGCGCC 1 cut(s) 365
MlyI GAGTC 2 cut(s) 26, 798
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 744
MseI TTAA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 744
MspR9I CCNGG 5 cut(s) 103, 585, 610, 785, 920
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 5 cut(s) 103, 585, 610, 785, 920
MwoI GCNNNNNNNGC 4 cut(s) 91, 220, 401, 876
NarI GGCGCC 1 cut(s) 365
NdeII GATC 1 cut(s) 319
NlaIII CATG 6 cut(s) 84, 133, 214, 701, 857, 935
NlaIV GGNNCC 6 cut(s) 48, 100, 366, 439, 463, 474
NmuCI GTSAC 2 cut(s) 752, 913
NsiI ATGCAT 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 994
PaqCI CACCTGC 1 cut(s) 707
PasI CCCWGGG 1 cut(s) 784
PceI AGGCCT 1 cut(s) 583
PctI GAATGC 1 cut(s) 773
PfeI GAWTC 2 cut(s) 542, 655
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 2 cut(s) 406, 1020
PleI GAGTC 2 cut(s) 25, 797
PluTI GGCGCC 1 cut(s) 368
PpsI GAGTC 2 cut(s) 25, 797
PshAI GACNNNNGTC 1 cut(s) 920
Psp6I CCWGG 5 cut(s) 101, 583, 608, 783, 918
PspFI CCCAGC 2 cut(s) 186, 942
PspGI CCWGG 5 cut(s) 101, 583, 608, 783, 918
PspN4I GGNNCC 6 cut(s) 48, 100, 366, 439, 463, 474
PspPI GGNCC 4 cut(s) 461, 473, 704, 922
PspXI VCTCGAGB 1 cut(s) 994
RsaI GTAC 4 cut(s) 100, 170, 679, 985
RsaNI GTAC 4 cut(s) 99, 169, 678, 984
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 405, 1019
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 4 cut(s) 461, 473, 704, 922
SchI GAGTC 2 cut(s) 26, 798
ScrFI CCNGG 5 cut(s) 103, 585, 610, 785, 920
SduI GDGCHC 1 cut(s) 993
SfaNI GCATC 4 cut(s) 67, 191, 199, 518
SfcI CTRYAG 1 cut(s) 757
SfoI GGCGCC 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 994
SinI GGWCC 3 cut(s) 461, 704, 922
SlaI CTCGAG 1 cut(s) 994
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
SpeI ACTAGT 2 cut(s) 803, 839
Sse9I AATT 1 cut(s) 486
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 1 cut(s) 459
SspDI GGCGCC 1 cut(s) 364
SspMI CTAG 8 cut(s) 39, 68, 423, 495, 546, 624, 804, 840
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 5 cut(s) 101, 583, 608, 783, 918
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 4 cut(s) 241, 249, 437, 606
TaiI ACGT 2 cut(s) 972, 985
TaqI TCGA 4 cut(s) 352, 629, 955, 995
TaqII GACCGA 1 cut(s) 544
TasI AATT 1 cut(s) 486
TatI WGTACW 1 cut(s) 677
TfiI GAWTC 2 cut(s) 542, 655
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 5 cut(s) 625, 680, 743, 752, 918
TseFI GTSAC 2 cut(s) 752, 913
TseI GCWGC 2 cut(s) 404, 1018
Tsp45I GTSAC 2 cut(s) 752, 913
TspDTI ATGAA 3 cut(s) 199, 253, 920
TspGWI ACGGA 3 cut(s) 167, 696, 914
TspRI CASTG 5 cut(s) 625, 680, 743, 752, 918
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 3 cut(s) 461, 704, 922
XhoI CTCGAG 1 cut(s) 994
XmiI GTMKAC 3 cut(s) 526, 646, 691
XspI CTAG 8 cut(s) 39, 68, 423, 495, 546, 624, 804, 840
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.