transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 102 - 166 | 1.7e-27 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 462 |
| AciI | CCGC | 1 cut(s) | 430 |
| AclWI | GGATC | 3 cut(s) | 500, 574, 690 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AfaI | GTAC | 3 cut(s) | 497, 576, 603 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 338, 613 |
| AflIII | ACRYGT | 1 cut(s) | 514 |
| AgsI | TTSAA | 4 cut(s) | 293, 299, 322, 659 |
| AjiI | CACGTC | 1 cut(s) | 478 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 285, 317 |
| AluBI | AGCT | 3 cut(s) | 116, 264, 665 |
| AluI | AGCT | 3 cut(s) | 116, 264, 665 |
| Alw26I | GTCTC | 2 cut(s) | 226, 484 |
| AlwI | GGATC | 3 cut(s) | 500, 574, 690 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| AspS9I | GGNCC | 3 cut(s) | 138, 182, 389 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 317, 641 |
| AvaII | GGWCC | 3 cut(s) | 138, 182, 389 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 558, 590 |
| BccI | CCATC | 2 cut(s) | 52, 235 |
| BciVI | GTATCC | 1 cut(s) | 711 |
| BclI | TGATCA | 1 cut(s) | 222 |
| BcoDI | GTCTC | 2 cut(s) | 226, 484 |
| BfuI | GTATCC | 1 cut(s) | 711 |
| BmcAI | AGTACT | 1 cut(s) | 603 |
| Bme18I | GGWCC | 3 cut(s) | 138, 182, 389 |
| BmgBI | CACGTC | 1 cut(s) | 478 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 182, 389 |
| BmiI | GGNNCC | 4 cut(s) | 105, 140, 391, 675 |
| BmsI | GCATC | 1 cut(s) | 295 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 219, 251 |
| BpuEI | CTTGAG | 2 cut(s) | 221, 441 |
| BsaJI | CCNNGG | 2 cut(s) | 332, 377 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 338, 613 |
| Bse1I | ACTGG | 1 cut(s) | 572 |
| BseDI | CCNNGG | 2 cut(s) | 332, 377 |
| BseGI | GGATG | 1 cut(s) | 160 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 338, 613 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 572 |
| BslFI | GGGAC | 1 cut(s) | 375 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 338, 613 |
| BsmAI | GTCTC | 2 cut(s) | 226, 484 |
| BsmBI | CGTCTC | 1 cut(s) | 484 |
| BsmFI | GGGAC | 1 cut(s) | 375 |
| Bsp143I | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| BspACI | CCGC | 1 cut(s) | 430 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspLI | GGNNCC | 4 cut(s) | 105, 140, 391, 675 |
| BspPI | GGATC | 3 cut(s) | 500, 574, 690 |
| BspQI | GCTCTTC | 1 cut(s) | 254 |
| BsrI | ACTGG | 1 cut(s) | 572 |
| BssECI | CCNNGG | 2 cut(s) | 332, 377 |
| BssMI | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| BssT1I | CCWWGG | 1 cut(s) | 377 |
| Bst4CI | ACNGT | 3 cut(s) | 80, 132, 699 |
| Bst6I | CTCTTC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 2 cut(s) | 186, 371 |
| BstDSI | CCRYGG | 1 cut(s) | 332 |
| BstF5I | GGATG | 1 cut(s) | 160 |
| BstKTI | GATC | 6 cut(s) | 201, 225, 508, 529, 582, 685 |
| BstMAI | GTCTC | 2 cut(s) | 226, 484 |
| BstMBI | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| BstNSI | RCATGY | 1 cut(s) | 518 |
| BstX2I | RGATCY | 1 cut(s) | 579 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 150 |
| BstYI | RGATCY | 1 cut(s) | 579 |
| BsuI | GTATCC | 1 cut(s) | 711 |
| BtgI | CCRYGG | 1 cut(s) | 332 |
| BtrI | CACGTC | 1 cut(s) | 478 |
| BtsCI | GGATG | 1 cut(s) | 160 |
| BtsIMutI | CAGTG | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 182, 389 |
| Csp6I | GTAC | 3 cut(s) | 496, 575, 602 |
| CviAII | CATG | 2 cut(s) | 484, 515 |
| CviJI | RGCY | 8 cut(s) | 11, 53, 104, 116, 245, 264, 437, 665 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 53, 104, 116, 245, 264, 437, 665 |
| CviQI | GTAC | 3 cut(s) | 496, 575, 602 |
| DdeI | CTNAG | 2 cut(s) | 186, 371 |
| DpnI | GATC | 6 cut(s) | 200, 224, 507, 528, 581, 684 |
| DpnII | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| DraI | TTTAAA | 1 cut(s) | 28 |
| Eam1104I | CTCTTC | 1 cut(s) | 254 |
| EarI | CTCTTC | 1 cut(s) | 254 |
| Eco130I | CCWWGG | 1 cut(s) | 377 |
| Eco47I | GGWCC | 3 cut(s) | 138, 182, 389 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoT14I | CCWWGG | 1 cut(s) | 377 |
| ErhI | CCWWGG | 1 cut(s) | 377 |
| Esp3I | CGTCTC | 1 cut(s) | 484 |
| FaeI | CATG | 2 cut(s) | 487, 518 |
| FaqI | GGGAC | 1 cut(s) | 375 |
| FatI | CATG | 2 cut(s) | 483, 514 |
| FbaI | TGATCA | 1 cut(s) | 222 |
| FblI | GTMKAC | 1 cut(s) | 462 |
| FokI | GGATG | 1 cut(s) | 167 |
| Hin1II | CATG | 2 cut(s) | 487, 518 |
| HindIII | AAGCTT | 1 cut(s) | 114 |
| HinfI | GANTC | 2 cut(s) | 234, 646 |
| HphI | GGTGA | 3 cut(s) | 232, 317, 641 |
| Hpy166II | GTNNAC | 2 cut(s) | 359, 463 |
| Hpy188I | TCNGA | 2 cut(s) | 227, 608 |
| Hpy188III | TCNNGA | 4 cut(s) | 185, 238, 290, 593 |
| Hpy8I | GTNNAC | 2 cut(s) | 359, 463 |
| HpyAV | CCTTC | 2 cut(s) | 331, 519 |
| HpyCH4III | ACNGT | 3 cut(s) | 80, 132, 699 |
| HpyCH4IV | ACGT | 1 cut(s) | 477 |
| HpyCH4V | TGCA | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 371 |
| HpySE526I | ACGT | 1 cut(s) | 477 |
| Hsp92II | CATG | 2 cut(s) | 487, 518 |
| Ksp22I | TGATCA | 1 cut(s) | 222 |
| Kzo9I | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| LguI | GCTCTTC | 1 cut(s) | 254 |
| LmnI | GCTCC | 1 cut(s) | 109 |
| LpnPI | CCDG | 7 cut(s) | 198, 265, 404, 537, 585, 665, 690 |
| LweI | GCATC | 1 cut(s) | 295 |
| MaeII | ACGT | 1 cut(s) | 477 |
| MaeIII | GTNAC | 2 cut(s) | 80, 519 |
| MalI | GATC | 6 cut(s) | 200, 224, 507, 528, 581, 684 |
| MboI | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| MboII | GAAGA | 5 cut(s) | 271, 560, 575, 578, 671 |
| MflI | RGATCY | 1 cut(s) | 579 |
| MluCI | AATT | 3 cut(s) | 23, 293, 411 |
| MlyI | GAGTC | 1 cut(s) | 228 |
| MnlI | CCTC | 5 cut(s) | 356, 453, 636, 673, 684 |
| MseI | TTAA | 5 cut(s) | 27, 216, 554, 630, 718 |
| NdeII | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| NlaIII | CATG | 2 cut(s) | 487, 518 |
| NlaIV | GGNNCC | 4 cut(s) | 105, 140, 391, 675 |
| NspI | RCATGY | 1 cut(s) | 518 |
| PciI | ACATGT | 1 cut(s) | 514 |
| PciSI | GCTCTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 646 |
| PleI | GAGTC | 1 cut(s) | 228 |
| PpsI | GAGTC | 1 cut(s) | 228 |
| PpuMI | RGGWCCY | 1 cut(s) | 138 |
| PscI | ACATGT | 1 cut(s) | 514 |
| Psp5II | RGGWCCY | 1 cut(s) | 138 |
| PspN4I | GGNNCC | 4 cut(s) | 105, 140, 391, 675 |
| PspPI | GGNCC | 3 cut(s) | 138, 182, 389 |
| PspPPI | RGGWCCY | 1 cut(s) | 138 |
| PsuI | RGATCY | 1 cut(s) | 579 |
| RsaI | GTAC | 3 cut(s) | 497, 576, 603 |
| RsaNI | GTAC | 3 cut(s) | 496, 575, 602 |
| SapI | GCTCTTC | 1 cut(s) | 254 |
| SaqAI | TTAA | 5 cut(s) | 27, 216, 554, 630, 718 |
| Sau3AI | GATC | 6 cut(s) | 198, 222, 505, 526, 579, 682 |
| Sau96I | GGNCC | 3 cut(s) | 138, 182, 389 |
| ScaI | AGTACT | 1 cut(s) | 603 |
| SchI | GAGTC | 1 cut(s) | 228 |
| SfaNI | GCATC | 1 cut(s) | 295 |
| SinI | GGWCC | 3 cut(s) | 138, 182, 389 |
| SmlI | CTYRAG | 2 cut(s) | 236, 456 |
| SmoI | CTYRAG | 2 cut(s) | 236, 456 |
| Sse9I | AATT | 3 cut(s) | 23, 293, 411 |
| SsiI | CCGC | 1 cut(s) | 430 |
| StyI | CCWWGG | 1 cut(s) | 377 |
| TaaI | ACNGT | 3 cut(s) | 80, 132, 699 |
| TaiI | ACGT | 1 cut(s) | 480 |
| TaqI | TCGA | 1 cut(s) | 89 |
| TasI | AATT | 3 cut(s) | 23, 293, 411 |
| TatI | WGTACW | 3 cut(s) | 495, 574, 601 |
| TfiI | GAWTC | 1 cut(s) | 646 |
| Tru1I | TTAA | 5 cut(s) | 27, 216, 554, 630, 718 |
| Tru9I | TTAA | 5 cut(s) | 27, 216, 554, 630, 718 |
| TscAI | CASTG | 1 cut(s) | 137 |
| TspDTI | ATGAA | 2 cut(s) | 171, 576 |
| TspGWI | ACGGA | 1 cut(s) | 321 |
| TspRI | CASTG | 1 cut(s) | 137 |
| VpaK11BI | GGWCC | 3 cut(s) | 138, 182, 389 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XceI | RCATGY | 1 cut(s) | 518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 92 |
| XmiI | GTMKAC | 1 cut(s) | 462 |
| ZrmI | AGTACT | 1 cut(s) | 603 |