FvH4_3g32803

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
28111888 .. 28116451
4564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32803.t1

Sequence Viewer

Length: 4332 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACATCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTCATGGATCGAGCTCCACGCCCTCCTACTGTAAAAAGGAGAGAAGTGTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCTCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGAGATGTCAGAAGAAAGGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTGGCCAGTAGAAATGTTGAGGATGCGCTGAATATGTCGTGGGAGCAGTTTAAGACTCTCTTCTTGGGGCAGTATTTCAGTCCTGCCCACCGCAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAAGGTGTTATAGAGTTCCAGGAGAGATTCACTTCCCTGAGCTATCATGTGTCATATCTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTTATTGGGGCTCTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCTGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCAGGGTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGCTCTCATTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTGTGGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCAGACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCAGGACCACTTCAGGAGGGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGTTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTAGGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGCCCTCCATGCCAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGTTGTGAAGTGGTAGTGGAAGGAGTTATTTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTATTACTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGAGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCTCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAATTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAGAAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGACGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTACGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATCGAGTATCATCCTGGAAAGGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCATTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCCATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGTTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGTTTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGTAGGGGAAAAAGAGCTTTGCGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAGGACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCATTGGAAAGGAGTTGTGCGTTTCGGTAAACGTGGGAAGCTTAGTCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTATCCCGGATACATAATGTGTTTCATGTATCCATGCTTCGCAAATATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAGGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1444

Amino Acids

163.41

Weight (kDa)

9.02

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 1.4e-14 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 3.3e-32 Retroviral aspartyl protease
RVT_1 PF00078 596 - 758 1.4e-31 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 821 - 915 4.2e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 847 - 945 1.2e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1060 - 1117 4e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1306 - 1370 4.8e-28 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 4201
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 3 cut(s) 820, 2366, 4201
Acc65I GGTACC 1 cut(s) 3662
AccB1I GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1910, 3662
AccB7I CCANNNNNTGG 1 cut(s) 2308
AccBSI CCGCTC 1 cut(s) 3857
AccII CGCG 2 cut(s) 1122, 2057
AccIII TCCGGA 2 cut(s) 1684, 2533
AcoI YGGCCR 4 cut(s) 324, 636, 668, 3284
AcsI RAATTY 4 cut(s) 420, 2018, 3632, 3905
AcuI CTGAAG 6 cut(s) 714, 943, 1011, 3351, 3632, 3661
AcyI GRCGYC 4 cut(s) 13, 799, 1108, 1781
AfaI GTAC 4 cut(s) 1159, 2771, 3448, 3664
AfiI CCNNNNNNNGG 9 cut(s) 695, 732, 979, 1150, 1972, 2308, 2445, 2651, 3456
AflIII ACRYGT 1 cut(s) 2772
AgeI ACCGGT 1 cut(s) 4183
AjiI CACGTC 1 cut(s) 2579
AjnI CCWGG 7 cut(s) 291, 477, 536, 1053, 1294, 1708, 2857
AjuI GAANNNNNNNTTGG 2 cut(s) 3518, 3550
AleI CACNNNNGTG 1 cut(s) 2342
Alw21I GWGCWC 5 cut(s) 124, 248, 667, 2518, 3646
Alw26I GTCTC 5 cut(s) 802, 1293, 1317, 2707, 2794
Aor13HI TCCGGA 2 cut(s) 1684, 2533
AoxI GGCC 7 cut(s) 324, 636, 668, 3020, 3284, 3793, 4000
ApoI RAATTY 4 cut(s) 420, 2018, 3632, 3905
ArsI GACNNNNNNTTYG 2 cut(s) 4147, 4179
AseI ATTAAT 1 cut(s) 1190
AsiGI ACCGGT 1 cut(s) 4183
Asp700I GAANNNNTTC 3 cut(s) 1662, 1752, 4185
Asp718I GGTACC 1 cut(s) 3662
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 5 cut(s) 15, 349, 1124, 1783, 2391
AsuC2I CCSGG 3 cut(s) 1227, 3240, 4069
AsuHPI GGTGA 8 cut(s) 283, 1337, 1342, 2038, 3409, 3484, 3487, 3929
AsuII TTCGAA 2 cut(s) 1501, 3095
AvaII GGWCC 8 cut(s) 194, 534, 686, 698, 952, 990, 3409, 3852
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 1 cut(s) 1054
BalI TGGCCA 3 cut(s) 326, 638, 3286
BamHI GGATCC 3 cut(s) 1962, 2296, 3613
BanI GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1910, 3662
BanII GRGCYC 3 cut(s) 124, 562, 3646
BarI GAAGNNNNNNTAC 4 cut(s) 1482, 1514, 4083, 4115
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 4 cut(s) 1017, 1826, 2338, 2756
Bbv12I GWGCWC 5 cut(s) 124, 248, 667, 2518, 3646
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 3367
BcgI CGANNNNNNTGC 4 cut(s) 1136, 1170, 2591, 2625
BciT130I CCWGG 7 cut(s) 293, 479, 538, 1055, 1296, 1710, 2859
BciVI GTATCC 4 cut(s) 1624, 4065, 4102, 4323
BclI TGATCA 2 cut(s) 1897, 3061
BcnI CCSGG 3 cut(s) 1227, 3240, 4069
BcoDI GTCTC 5 cut(s) 802, 1293, 1317, 2707, 2794
BfaI CTAG 9 cut(s) 9, 816, 1041, 1125, 1251, 2243, 2574, 2585, 2631
BfmI CTRYAG 3 cut(s) 1668, 1743, 2961
BfoI RGCGCY 3 cut(s) 16, 1784, 2392
BfuAI ACCTGC 3 cut(s) 820, 2366, 4201
BfuI GTATCC 4 cut(s) 1624, 4065, 4102, 4323
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 3898
BlnI CCTAGG 1 cut(s) 8
Bme18I GGWCC 8 cut(s) 194, 534, 686, 698, 952, 990, 3409, 3852
BmgBI CACGTC 1 cut(s) 2579
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 8 cut(s) 193, 334, 2019, 2179, 2557, 2589, 2872, 4293
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 4 cut(s) 1017, 1826, 2338, 2756
BplI GAGNNNNNCTC 4 cut(s) 979, 1011, 3831, 3863
BpmI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2696, 4041
Bpu10I CCTNAGC 3 cut(s) 101, 497, 4217
Bpu14I TTCGAA 2 cut(s) 1501, 3095
BpuEI CTTGAG 3 cut(s) 2128, 2687, 3398
BpuMI CCSGG 3 cut(s) 1227, 3240, 4069
Bsa29I ATCGAT 2 cut(s) 1884, 4042
BsaAI YACGTR 1 cut(s) 2773
BsaBI GATNNNNATC 1 cut(s) 3612
BsaHI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 4 cut(s) 1322, 1684, 2533, 4183
BsaXI ACNNNNNCTCC 8 cut(s) 2277, 2307, 2500, 2530, 2538, 2568, 3728, 3758
Bsc4I CCNNNNNNNGG 9 cut(s) 695, 732, 979, 1150, 1972, 2308, 2445, 2651, 3456
Bse118I RCCGGY 1 cut(s) 4183
Bse1I ACTGG 9 cut(s) 81, 317, 327, 690, 823, 3006, 3023, 3395, 3515
Bse21I CCTNAGG 1 cut(s) 1698
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 3612
BseAI TCCGGA 2 cut(s) 1684, 2533
BseBI CCWGG 7 cut(s) 293, 479, 538, 1055, 1296, 1710, 2859
BseCI ATCGAT 2 cut(s) 1884, 4042
BseJI GATNNNNATC 1 cut(s) 3612
BseLI CCNNNNNNNGG 9 cut(s) 695, 732, 979, 1150, 1972, 2308, 2445, 2651, 3456
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 9 cut(s) 81, 317, 327, 690, 823, 3006, 3023, 3395, 3515
BseRI GAGGAG 3 cut(s) 1715, 2412, 4307
BseSI GKGCMC 1 cut(s) 1054
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 3486
Bsh1236I CGCG 2 cut(s) 1122, 2057
Bsh1285I CGRYCG 1 cut(s) 4201
BshFI GGCC 7 cut(s) 326, 638, 670, 3022, 3286, 3795, 4002
BshNI GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1910, 3662
BshTI ACCGGT 1 cut(s) 4183
BshVI ATCGAT 2 cut(s) 1884, 4042
BsiEI CGRYCG 1 cut(s) 4201
BsiHKAI GWGCWC 5 cut(s) 124, 248, 667, 2518, 3646
BsiSI CCGG 7 cut(s) 1227, 1323, 1685, 2534, 3239, 4069, 4184
BslFI GGGAC 8 cut(s) 87, 207, 672, 892, 1095, 1988, 3151, 3422
BslI CCNNNNNNNGG 9 cut(s) 695, 732, 979, 1150, 1972, 2308, 2445, 2651, 3456
BsmAI GTCTC 5 cut(s) 802, 1293, 1317, 2707, 2794
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 8 cut(s) 87, 207, 672, 892, 1095, 1988, 3151, 3422
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 7 cut(s) 326, 638, 670, 3022, 3286, 3795, 4002
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 2 cut(s) 1501, 3095
Bsp1286I GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 2518, 3646
Bsp13I TCCGGA 2 cut(s) 1684, 2533
Bsp19I CCATGG 3 cut(s) 633, 871, 3420
BspANI GGCC 7 cut(s) 326, 638, 670, 3022, 3286, 3795, 4002
BspDI ATCGAT 2 cut(s) 1884, 4042
BspEI TCCGGA 2 cut(s) 1684, 2533
BspFNI CGCG 2 cut(s) 1122, 2057
BspHI TCATGA 2 cut(s) 2073, 2668
BspMI ACCTGC 3 cut(s) 820, 2366, 4201
BspQI GCTCTTC 1 cut(s) 3651
BspT104I TTCGAA 2 cut(s) 1501, 3095
BspT107I GGYRCC 6 cut(s) 12, 185, 1049, 1780, 1910, 3662
BspTNI GGTCTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 3857
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 4183
BsrI ACTGG 9 cut(s) 81, 317, 327, 690, 823, 3006, 3023, 3395, 3515
BssAI RCCGGY 1 cut(s) 4183
BssNI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 6 cut(s) 8, 189, 633, 871, 1531, 3420
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 7 cut(s) 293, 479, 538, 1055, 1296, 1710, 2859
Bst4CI ACNGT 6 cut(s) 139, 1855, 2344, 3054, 3467, 3584
BstACI GRCGYC 4 cut(s) 13, 799, 1108, 1781
BstAPI GCANNNNNTGC 2 cut(s) 3230, 4303
BstBAI YACGTR 1 cut(s) 2773
BstBI TTCGAA 2 cut(s) 1501, 3095
BstC8I GCNNGC 8 cut(s) 244, 324, 1134, 1206, 2163, 2477, 2682, 2958
BstDSI CCRYGG 5 cut(s) 17, 633, 871, 2055, 3420
BstFNI CGCG 2 cut(s) 1122, 2057
BstH2I RGCGCY 3 cut(s) 16, 1784, 2392
BstHHI GCGC 5 cut(s) 15, 349, 1124, 1783, 2391
BstMAI GTCTC 5 cut(s) 802, 1293, 1317, 2707, 2794
BstMCI CGRYCG 1 cut(s) 4201
BstNI CCWGG 7 cut(s) 293, 479, 538, 1055, 1296, 1710, 2859
BstNSI RCATGY 3 cut(s) 1136, 1310, 2165
BstSFI CTRYAG 3 cut(s) 1668, 1743, 2961
BstSLI GKGCMC 1 cut(s) 1054
BstUI CGCG 2 cut(s) 1122, 2057
BstV2I GAAGAC 4 cut(s) 1017, 1826, 2338, 2756
BstX2I RGATCY 5 cut(s) 1962, 2068, 2296, 3613, 3898
BstXI CCANNNNNNTGG 1 cut(s) 1302
BstYI RGATCY 5 cut(s) 1962, 2068, 2296, 3613, 3898
Bsu15I ATCGAT 2 cut(s) 1884, 4042
Bsu36I CCTNAGG 1 cut(s) 1698
BsuI GTATCC 4 cut(s) 1624, 4065, 4102, 4323
BsuRI GGCC 7 cut(s) 326, 638, 670, 3022, 3286, 3795, 4002
BsuTUI ATCGAT 2 cut(s) 1884, 4042
BtgI CCRYGG 5 cut(s) 17, 633, 871, 2055, 3420
BtrI CACGTC 1 cut(s) 2579
BtsI GCAGTG 4 cut(s) 854, 1066, 2322, 3681
BveI ACCTGC 3 cut(s) 820, 2366, 4201
Cac8I GCNNGC 8 cut(s) 244, 324, 1134, 1206, 2163, 2477, 2682, 2958
CciI TCATGA 2 cut(s) 2073, 2668
CfoI GCGC 5 cut(s) 15, 349, 1124, 1783, 2391
Cfr10I RCCGGY 1 cut(s) 4183
Cfr42I CCGCGG 1 cut(s) 2058
ClaI ATCGAT 2 cut(s) 1884, 4042
CseI GACGC 1 cut(s) 626
Csp6I GTAC 4 cut(s) 1158, 2770, 3447, 3663
CspAI ACCGGT 1 cut(s) 4183
CviQI GTAC 4 cut(s) 1158, 2770, 3447, 3663
DinI GGCGCC 2 cut(s) 14, 1782
DraI TTTAAA 1 cut(s) 3151
EaeI YGGCCR 4 cut(s) 324, 636, 668, 3284
EciI GGCGGA 1 cut(s) 3563
Ecl136II GAGCTC 2 cut(s) 122, 3644
Eco130I CCWWGG 6 cut(s) 8, 189, 633, 871, 1531, 3420
Eco24I GRGCYC 3 cut(s) 124, 562, 3646
Eco31I GGTCTC 1 cut(s) 802
Eco32I GATATC 1 cut(s) 2131
Eco47I GGWCC 8 cut(s) 194, 534, 686, 698, 952, 990, 3409, 3852
Eco53kI GAGCTC 2 cut(s) 122, 3644
Eco57I CTGAAG 6 cut(s) 714, 943, 1011, 3351, 3632, 3661
Eco81I CCTNAGG 1 cut(s) 1698
EcoICRI GAGCTC 2 cut(s) 122, 3644
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 7 cut(s) 291, 477, 536, 1053, 1294, 1708, 2857
EcoRV GATATC 1 cut(s) 2131
EcoT14I CCWWGG 6 cut(s) 8, 189, 633, 871, 1531, 3420
EcoT38I GRGCYC 3 cut(s) 124, 562, 3646
EgeI GGCGCC 2 cut(s) 14, 1782
EheI GGCGCC 2 cut(s) 14, 1782
ErhI CCWWGG 6 cut(s) 8, 189, 633, 871, 1531, 3420
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 2489, 2521
FaqI GGGAC 8 cut(s) 87, 207, 672, 892, 1095, 1988, 3151, 3422
FauI CCCGC 4 cut(s) 1080, 2062, 3036, 4242
FauNDI CATATG 1 cut(s) 3226
FbaI TGATCA 2 cut(s) 1897, 3061
FriOI GRGCYC 3 cut(s) 124, 562, 3646
FspBI CTAG 9 cut(s) 9, 816, 1041, 1125, 1251, 2243, 2574, 2585, 2631
GlaI GCGC 5 cut(s) 14, 348, 1123, 1782, 2390
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2696, 4041
HaeII RGCGCY 3 cut(s) 16, 1784, 2392
HaeIII GGCC 7 cut(s) 326, 638, 670, 3022, 3286, 3795, 4002
HapII CCGG 7 cut(s) 1227, 1323, 1685, 2534, 3239, 4069, 4184
HgaI GACGC 1 cut(s) 626
HhaI GCGC 5 cut(s) 15, 349, 1124, 1783, 2391
Hin1I GRCGYC 4 cut(s) 13, 799, 1108, 1781
Hin6I GCGC 5 cut(s) 13, 347, 1122, 1781, 2389
HinP1I GCGC 5 cut(s) 13, 347, 1122, 1781, 2389
HincII GTYRAC 1 cut(s) 2436
HindII GTYRAC 1 cut(s) 2436
HindIII AAGCTT 1 cut(s) 3980
HpaII CCGG 7 cut(s) 1227, 1323, 1685, 2534, 3239, 4069, 4184
HphI GGTGA 8 cut(s) 283, 1337, 1342, 2038, 3409, 3484, 3487, 3929
Hpy166II GTNNAC 6 cut(s) 220, 1106, 2140, 2436, 2778, 3971
Hpy8I GTNNAC 6 cut(s) 220, 1106, 2140, 2436, 2778, 3971
HpyAV CCTTC 9 cut(s) 50, 262, 455, 1370, 2149, 2276, 3262, 3375, 4131
HpyCH4III ACNGT 6 cut(s) 139, 1855, 2344, 3054, 3467, 3584
HpyCH4IV ACGT 5 cut(s) 799, 1108, 2578, 2772, 3973
HpySE526I ACGT 5 cut(s) 799, 1108, 2578, 2772, 3973
Hsp92I GRCGYC 4 cut(s) 13, 799, 1108, 1781
HspAI GCGC 5 cut(s) 13, 347, 1122, 1781, 2389
KasI GGCGCC 2 cut(s) 12, 1780
Kpn2I TCCGGA 2 cut(s) 1684, 2533
KpnI GGTACC 1 cut(s) 3666
Ksp22I TGATCA 2 cut(s) 1897, 3061
KspI CCGCGG 1 cut(s) 2058
LguI GCTCTTC 1 cut(s) 3651
LweI GCATC 8 cut(s) 193, 334, 2019, 2179, 2557, 2589, 2872, 4293
MaeI CTAG 9 cut(s) 9, 816, 1041, 1125, 1251, 2243, 2574, 2585, 2631
MaeII ACGT 5 cut(s) 799, 1108, 2578, 2772, 3973
MaeIII GTNAC 6 cut(s) 283, 800, 1849, 1998, 2344, 3811
MbiI CCGCTC 1 cut(s) 3857
MfeI CAATTG 2 cut(s) 1826, 2636
MflI RGATCY 5 cut(s) 1962, 2068, 2296, 3613, 3898
MhlI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 2518, 3646
MlsI TGGCCA 3 cut(s) 326, 638, 3286
MluNI TGGCCA 3 cut(s) 326, 638, 3286
Mly113I GGCGCC 2 cut(s) 13, 1781
MlyI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2770, 3133, 3483, 3840
MmeI TCCRAC 1 cut(s) 408
Mox20I TGGCCA 3 cut(s) 326, 638, 3286
MroI TCCGGA 2 cut(s) 1684, 2533
MroXI GAANNNNTTC 3 cut(s) 1662, 1752, 4185
MscI TGGCCA 3 cut(s) 326, 638, 3286
MslI CAYNNNNRTG 6 cut(s) 251, 1272, 2342, 3251, 3395, 3419
Msp20I TGGCCA 3 cut(s) 326, 638, 3286
MspA1I CMGCKG 5 cut(s) 743, 1031, 1087, 1802, 2057
MspI CCGG 7 cut(s) 1227, 1323, 1685, 2534, 3239, 4069, 4184
MunI CAATTG 2 cut(s) 1826, 2636
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 7 cut(s) 293, 479, 538, 1055, 1296, 1710, 2859
MvnI CGCG 2 cut(s) 1122, 2057
NarI GGCGCC 2 cut(s) 13, 1781
NciI CCSGG 3 cut(s) 1227, 3240, 4069
NcoI CCATGG 3 cut(s) 633, 871, 3420
NdeI CATATG 1 cut(s) 3226
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 4 cut(s) 800, 1849, 1998, 2344
NspI RCATGY 3 cut(s) 1136, 1310, 2165
NspV TTCGAA 2 cut(s) 1501, 3095
OliI CACNNNNGTG 1 cut(s) 2342
PaeI GCATGC 2 cut(s) 1136, 2165
PagI TCATGA 2 cut(s) 2073, 2668
PaqCI CACCTGC 1 cut(s) 4201
PasI CCCWGGG 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 3651
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3616
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 3 cut(s) 1662, 1752, 4185
PfeI GAWTC 8 cut(s) 299, 486, 1257, 1843, 2353, 3593, 4192, 4286
PflFI GACNNNGTC 1 cut(s) 2580
PflMI CCANNNNNTGG 1 cut(s) 2308
PfoI TCCNGGA 5 cut(s) 291, 477, 1225, 2857, 4067
PinAI ACCGGT 1 cut(s) 4183
PleI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2769, 3133, 3483, 3840
PluTI GGCGCC 2 cut(s) 16, 1784
PpsI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2769, 3133, 3483, 3840
Ppu21I YACGTR 1 cut(s) 2773
PpuMI RGGWCCY 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 1190
Psp124BI GAGCTC 2 cut(s) 124, 3646
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 7 cut(s) 291, 477, 536, 1053, 1294, 1708, 2857
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 7 cut(s) 291, 477, 536, 1053, 1294, 1708, 2857
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 5 cut(s) 1962, 2068, 2296, 3613, 3898
PsyI GACNNNGTC 1 cut(s) 2580
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 4 cut(s) 1159, 2771, 3448, 3664
RsaNI GTAC 4 cut(s) 1158, 2770, 3447, 3663
RseI CAYNNNNRTG 6 cut(s) 251, 1272, 2342, 3251, 3395, 3419
SacI GAGCTC 2 cut(s) 124, 3646
SacII CCGCGG 1 cut(s) 2058
SapI GCTCTTC 1 cut(s) 3651
SchI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2770, 3133, 3483, 3840
SduI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 2518, 3646
SfaNI GCATC 8 cut(s) 193, 334, 2019, 2179, 2557, 2589, 2872, 4293
SfcI CTRYAG 3 cut(s) 1668, 1743, 2961
SfoI GGCGCC 2 cut(s) 14, 1782
Sfr303I CCGCGG 1 cut(s) 2058
SfuI TTCGAA 2 cut(s) 1501, 3095
SgrBI CCGCGG 1 cut(s) 2058
SinI GGWCC 8 cut(s) 194, 534, 686, 698, 952, 990, 3409, 3852
SmiMI CAYNNNNRTG 6 cut(s) 251, 1272, 2342, 3251, 3395, 3419
SmlI CTYRAG 3 cut(s) 2143, 2702, 3377
SmoI CTYRAG 3 cut(s) 2143, 2702, 3377
SphI GCATGC 2 cut(s) 1136, 2165
SspDI GGCGCC 2 cut(s) 12, 1780
SspI AATATT 1 cut(s) 2184
SspMI CTAG 9 cut(s) 9, 816, 1041, 1125, 1251, 2243, 2574, 2585, 2631
SstI GAGCTC 2 cut(s) 124, 3646
StyI CCWWGG 6 cut(s) 8, 189, 633, 871, 1531, 3420
TaaI ACNGT 6 cut(s) 139, 1855, 2344, 3054, 3467, 3584
TaiI ACGT 5 cut(s) 802, 1111, 2581, 2775, 3976
TaqII GACCGA 3 cut(s) 1057, 1986, 4215
TauI GCSGC 4 cut(s) 2060, 2647, 3107, 3795
TfiI GAWTC 8 cut(s) 299, 486, 1257, 1843, 2353, 3593, 4192, 4286
TseFI GTSAC 4 cut(s) 800, 1849, 1998, 2344
Tsp45I GTSAC 4 cut(s) 800, 1849, 1998, 2344
TspGWI ACGGA 4 cut(s) 1860, 2363, 3878, 4305
Tth111I GACNNNGTC 1 cut(s) 2580
Van91I CCANNNNNTGG 1 cut(s) 2308
VpaK11BI GGWCC 8 cut(s) 194, 534, 686, 698, 952, 990, 3409, 3852
VspI ATTAAT 1 cut(s) 1190
XapI RAATTY 4 cut(s) 420, 2018, 3632, 3905
XbaI TCTAGA 1 cut(s) 2573
XceI RCATGY 3 cut(s) 1136, 1310, 2165
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 3402
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 1662, 1752, 4185
XspI CTAG 9 cut(s) 9, 816, 1041, 1125, 1251, 2243, 2574, 2585, 2631
ZraI GACGTC 2 cut(s) 800, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.