Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

48676788 .. 48678485

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGACTGTGAGAGAGTACGAAACACGGTTCACCCAATTGTACAGGTTCGTTCCCCAGTTGGATGCCCGAGCCTTGGCTAAGAAGTTCCTAAGGGGACTAAATGACAGGATTAGGGAGATAGTGTACCCTCTTTGGTTAGCCACCAAGGAAGAGATCTTTGCTAGTGCCATGGCCCATGAACAGGCAACCAGCATACGTGTAAGTGAACGAGGGGCTGCGAAAGAATCCTTGGGAAAAGGGAAAGCGATTGTGGGGAGTAGTGGTTCCAGGGATCATGGAGGTAGGTCATGGAAGAGACAGCGGACCCATTTCCATCCACAGGCTCCAGCTAGGATAGTCAATCAATACCGAGCCCCAGCCAGGGCAGCACCAGTCCCATTTAGGGCTGTACCTGTGAGGCAAGCAGCACCAGCGGCACCGGTGAGATGCTACAACTGTGGGGAGCAGGGACACATCTCTAAGGTGTGTACGAAGGCGCAAACCAGGGTGTGCTTTAGCTGTGGCCAGCCAGGACATATTTCCAAAGAGTGTACTCGACCTCAGGGTGGAAAACAGGGTAACCAGCAGAGACTCTTACCTCCAGCTCCAGCTAGAGTATTCGCCATTGGTCAAGGAGGCACTGGGGTGGAAGGTACCTTATCTGTTTATAACTATCTTGCTAGAGTATTGTTTGATACGGGAGCCTCCCACTCTTTCATATCTAGTTCAGTAGTAGATGTGTTGGGATTGATTGCCATGCCTCTTACTAGATCATTATGTGTTACATCACCCTTGGGTGTGTCTCTTGAGCTAGTTATGTTTTGTGATGATTGCCCTATTGGGATAGGTGATAGAGAGTTCTCTGCCTCATTGATTGTGATTCCGGATCACACATATGATGTGATCTTGGGTATGGATTGGTTGAGTCCGAACCATGCATTGATTGACTGCTTTAGGATGATTGTGTCCTTCCATATTCCTGGACAACCAGTGTTTCAATATCGTTGTCTGAAGTCCGACATTACCATGAGGGCAGGGATTTTGGCTCATATTGAGTCAGGGAGTTGTATTTCTGAGATTACAGGGATTCCTGTAGTTTCAGAATACACTGATGTGTTTAAGGAGATACCAGGGTTGCCTCCAAAAAGGGTAATGGACTTCTCCATTGAGGTGATACCAGGTACTGCCCCGATATCGAAAGCACCCTATCGGATGGCTCCAGCTGAACTTCAGGAGTTGAAAGTTCAGATTGATGGATTATTGGCTCAAGGGTTCATTCAAGCTAGTGTATCTCCTTGGGGTGCACCAGTGTTGTTTGTGAAGAAGAAGGATAACTCACTTCGATTATGTGTGGATTATCGGCAGCTGAACAAGGTGACCATCAAGAACAGGTACCCTTTACCTAGGATTGATGACTTGTTTGATCAGCTTAAGGAGGCCACTATGTTCTCAAAGATTGATTTGAGATCTGGATATCACCAGTTAAGGGTGAAGGATGAGGATATTCCAAAGACGGCGTTCAGGACCAGGTATGGACATTTTGAGTTCCTTGTCATGCCTTTTGGTCTCACTAATGCACCAGCAGCATTCATGGACTTGATGAACCGCACGTTCAGTCCTTACTTGGATAAATTTGTTATAGTGTTTGTGGATGACATCTTGATTTATTCAAGGTCATTAGATGAGCATGAGAAGCATTTACGGATTGTACTACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

565

Amino Acids

63.03

Weight (kDa)

9.2

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	162 - 178	1.4e-06	Zinc knuckle
RVP_2	PF08284	209 - 317	1.2e-31	Retroviral aspartyl protease
gag-asp_proteas	PF13975	220 - 302	4.2e-06	gag-polyprotein putative aspartyl protease
RVT_1	PF00078	433 - 563	4.2e-30	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc65I	GGTACC	2 cut(s)	632, 1371
AccB1I	GGYRCC	3 cut(s)	415, 632, 1371
AccIII	TCCGGA	1 cut(s)	862
AciI	CCGC	3 cut(s)	301, 413, 1585
AclWI	GGATC	2 cut(s)	279, 873
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	1610
AcuI	CTGAAG	2 cut(s)	1010, 1193
AfiI	CCNNNNNNNGG	8 cut(s)	73, 181, 319, 360, 361, 382, 545, 1465
AflII	CTTAAG	1 cut(s)	1409
AflIII	ACRYGT	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	977, 1219, 1259, 1650
AjnI	CCWGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AleI	CACNNNNGTG	2 cut(s)	623, 1091
AloI	GAACNNNNNNTCC	2 cut(s)	247, 279
AluBI	AGCT	9 cut(s)	329, 498, 584, 590, 790, 1202, 1262, 1345, 1408
AluI	AGCT	9 cut(s)	329, 498, 584, 590, 790, 1202, 1262, 1345, 1408
Alw21I	GWGCWC	1 cut(s)	1285
Alw26I	GTCTC	4 cut(s)	289, 562, 786, 1550
Alw44I	GTGCAC	1 cut(s)	1281
AlwI	GGATC	2 cut(s)	279, 873
AlwNI	CAGNNNCTG	1 cut(s)	1163
Ama87I	CYCGRG	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	862
AoxI	GGCC	3 cut(s)	171, 502, 1416
ApaLI	GTGCAC	1 cut(s)	1281
ApeKI	GCWGC	5 cut(s)	215, 365, 404, 1342, 1562
ApoI	RAATTY	1 cut(s)	1610
AsiGI	ACCGGT	1 cut(s)	418
Asp718I	GGTACC	2 cut(s)	632, 1371
AspA2I	CCTAGG	1 cut(s)	1382
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	172, 303, 1503
AsuHPI	GGTGA	8 cut(s)	22, 433, 759, 839, 1162, 1366, 1448, 1480
AvaI	CYCGRG	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	303, 1503
AvrII	CCTAGG	1 cut(s)	1382
AxyI	CCTNAGG	2 cut(s)	89, 540
BaeGI	GKGCMC	1 cut(s)	1285
BaeI	ACNNNNGTAYC	2 cut(s)	1097, 1130
BalI	TGGCCA	1 cut(s)	504
BanI	GGYRCC	3 cut(s)	415, 632, 1371
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	1285
BbvI	GCAGC	5 cut(s)	202, 377, 416, 1354, 1574
BccI	CCATC	4 cut(s)	321, 1186, 1226, 1367
BceAI	ACGGC	1 cut(s)	1509
BciT130I	CCWGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
BclI	TGATCA	1 cut(s)	1402
BcoDI	GTCTC	4 cut(s)	289, 562, 786, 1550
BfaI	CTAG	9 cut(s)	162, 330, 591, 660, 702, 747, 791, 1263, 1383
BfmI	CTRYAG	1 cut(s)	1071
BfrI	CTTAAG	1 cut(s)	1409
BglII	AGATCT	2 cut(s)	153, 1445
BisI	GCNGC	6 cut(s)	216, 366, 405, 414, 1343, 1563
BlnI	CCTAGG	1 cut(s)	1382
BlsI	GCNGC	6 cut(s)	217, 367, 406, 415, 1344, 1564
Bme1390I	CCNGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
Bme18I	GGWCC	2 cut(s)	303, 1503
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	3 cut(s)	172, 303, 1503
BmiI	GGNNCC	8 cut(s)	265, 305, 324, 417, 634, 682, 1197, 1373
BmrFI	CCNGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
BmrI	ACTGGG	2 cut(s)	49, 630
BmsI	GCATC	2 cut(s)	52, 416
BmuI	ACTGGG	2 cut(s)	49, 630
BpmI	CTGGAG	4 cut(s)	309, 564, 570, 1182
BpuEI	CTTGAG	2 cut(s)	806, 1230
BsaAI	YACGTR	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	1550
BsaWI	WCCGGW	2 cut(s)	418, 862
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 247, 277
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 181, 319, 360, 361, 382, 545, 1465
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	6 cut(s)	55, 371, 625, 968, 1286, 1459
Bse21I	CCTNAGG	2 cut(s)	89, 540
BseAI	TCCGGA	1 cut(s)	862
BseBI	CCWGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
BseGI	GGATG	6 cut(s)	67, 313, 942, 1197, 1480, 1636
BseLI	CCNNNNNNNGG	8 cut(s)	73, 181, 319, 360, 361, 382, 545, 1465
BseMII	CTCAG	2 cut(s)	554, 1044
BseNI	ACTGG	6 cut(s)	55, 371, 625, 968, 1286, 1459
BseSI	GKGCMC	1 cut(s)	1285
BseXI	GCAGC	5 cut(s)	202, 377, 416, 1354, 1574
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	3 cut(s)	173, 504, 1418
BshNI	GGYRCC	3 cut(s)	415, 632, 1371
BshTI	ACCGGT	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	1285
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	419, 863
BslFI	GGGAC	3 cut(s)	108, 359, 462
BslI	CCNNNNNNNGG	8 cut(s)	73, 181, 319, 360, 361, 382, 545, 1465
BsmAI	GTCTC	4 cut(s)	289, 562, 786, 1550
BsmFI	GGGAC	3 cut(s)	108, 359, 462
BsmI	GAATGC	1 cut(s)	1565
BsnI	GGCC	3 cut(s)	173, 504, 1418
Bso31I	GGTCTC	1 cut(s)	1550
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	355, 1285
Bsp13I	TCCGGA	1 cut(s)	862
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	3 cut(s)	301, 413, 1585
BspANI	GGCC	3 cut(s)	173, 504, 1418
BspCNI	CTCAG	2 cut(s)	553, 1045
BspEI	TCCGGA	1 cut(s)	862
BspLI	GGNNCC	8 cut(s)	265, 305, 324, 417, 634, 682, 1197, 1373
BspPI	GGATC	2 cut(s)	279, 873
BspT107I	GGYRCC	3 cut(s)	415, 632, 1371
BspTI	CTTAAG	1 cut(s)	1409
BspTNI	GGTCTC	1 cut(s)	1550
BsrFI	RCCGGY	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	6 cut(s)	55, 371, 625, 968, 1286, 1459
BssAI	RCCGGY	1 cut(s)	418
BssMI	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
BssT1I	CCWWGG	7 cut(s)	72, 144, 168, 228, 771, 1274, 1382
Bst2UI	CCWGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
Bst4CI	ACNGT	4 cut(s)	7, 27, 437, 1695
Bst6I	CTCTTC	2 cut(s)	144, 287
BstAFI	CTTAAG	1 cut(s)	1409
BstAUI	TGTACA	1 cut(s)	39
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	402, 506
BstDEI	CTNAG	5 cut(s)	78, 89, 459, 540, 1053
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	2 cut(s)	557, 1354
BstF5I	GGATG	6 cut(s)	67, 313, 942, 1197, 1480, 1636
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	7 cut(s)	156, 274, 752, 868, 885, 1405, 1448
BstMAI	GTCTC	4 cut(s)	289, 562, 786, 1550
BstMBI	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
BstMWI	GCNNNNNNNGC	5 cut(s)	365, 410, 413, 1562, 1672
BstNI	CCWGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
BstPI	GGTNACC	2 cut(s)	557, 1354
BstSCI	CCNGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	1285
BstV1I	GCAGC	5 cut(s)	202, 377, 416, 1354, 1574
BstX2I	RGATCY	2 cut(s)	153, 1445
BstXI	CCANNNNNNTGG	1 cut(s)	959
BstYI	RGATCY	2 cut(s)	153, 1445
Bsu36I	CCTNAGG	2 cut(s)	89, 540
BsuRI	GGCC	3 cut(s)	173, 504, 1418
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	6 cut(s)	67, 313, 942, 1197, 1480, 1636
BtsIMutI	CAGTG	4 cut(s)	618, 975, 1086, 1293
Cac8I	GCNNGC	2 cut(s)	402, 506
CaiI	CAGNNNCTG	1 cut(s)	1163
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	172, 303, 1503
CsiI	ACCWGGT	2 cut(s)	1156, 1505
CspAI	ACCGGT	1 cut(s)	418
DdeI	CTNAG	5 cut(s)	78, 89, 459, 540, 1053
DpnI	GATC	7 cut(s)	155, 273, 751, 867, 884, 1404, 1447
DpnII	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	144, 287
EarI	CTCTTC	2 cut(s)	144, 287
Eco130I	CCWWGG	7 cut(s)	72, 144, 168, 228, 771, 1274, 1382
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	1550
Eco32I	GATATC	2 cut(s)	1173, 1454
Eco47I	GGWCC	2 cut(s)	303, 1503
Eco57I	CTGAAG	2 cut(s)	1010, 1193
Eco81I	CCTNAGG	2 cut(s)	89, 540
Eco88I	CYCGRG	1 cut(s)	66
Eco91I	GGTNACC	2 cut(s)	557, 1354
EcoO65I	GGTNACC	2 cut(s)	557, 1354
EcoRII	CCWGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
EcoRV	GATATC	2 cut(s)	1173, 1454
EcoT14I	CCWWGG	7 cut(s)	72, 144, 168, 228, 771, 1274, 1382
EcoT22I	ATGCAT	1 cut(s)	919
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	7 cut(s)	72, 144, 168, 228, 771, 1274, 1382
FaqI	GGGAC	3 cut(s)	108, 359, 462
FauNDI	CATATG	1 cut(s)	874
FbaI	TGATCA	1 cut(s)	1402
Fnu4HI	GCNGC	6 cut(s)	216, 366, 405, 414, 1343, 1563
FokI	GGATG	6 cut(s)	74, 300, 949, 1204, 1487, 1643
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	6 cut(s)	216, 366, 405, 414, 1343, 1563
FspBI	CTAG	9 cut(s)	162, 330, 591, 660, 702, 747, 791, 1263, 1383
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	6 cut(s)	216, 366, 405, 414, 1343, 1563
GsaI	CCCAGC	1 cut(s)	359
GsuI	CTGGAG	4 cut(s)	309, 564, 570, 1182
HaeIII	GGCC	3 cut(s)	173, 504, 1418
HapII	CCGG	2 cut(s)	419, 863
HhaI	GCGC	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	6 cut(s)	224, 570, 859, 904, 1034, 1066
HpaII	CCGG	2 cut(s)	419, 863
HphI	GGTGA	8 cut(s)	22, 433, 759, 839, 1162, 1366, 1448, 1480
Hpy166II	GTNNAC	6 cut(s)	30, 124, 206, 468, 531, 1283
Hpy188I	TCNGA	7 cut(s)	909, 990, 997, 1054, 1081, 1191, 1227
Hpy188III	TCNNGA	7 cut(s)	785, 863, 1211, 1363, 1449, 1501, 1639
Hpy8I	GTNNAC	6 cut(s)	30, 124, 206, 468, 531, 1283
HpyAV	CCTTC	5 cut(s)	466, 623, 958, 1300, 1465
HpyCH4III	ACNGT	4 cut(s)	7, 27, 437, 1695
HpyCH4IV	ACGT	2 cut(s)	196, 1589
HpyCH4V	TGCA	3 cut(s)	917, 1283, 1556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	365, 410, 413, 1562, 1672
HpyF3I	CTNAG	5 cut(s)	78, 89, 459, 540, 1053
HpySE526I	ACGT	2 cut(s)	196, 1589
HspAI	GCGC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	862
KpnI	GGTACC	2 cut(s)	636, 1375
Ksp22I	TGATCA	1 cut(s)	1402
Kzo9I	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
LmnI	GCTCC	5 cut(s)	328, 442, 589, 680, 1201
Lsp1109I	GCAGC	5 cut(s)	202, 377, 416, 1354, 1574
LweI	GCATC	2 cut(s)	52, 416
MabI	ACCWGGT	2 cut(s)	1156, 1505
MaeI	CTAG	9 cut(s)	162, 330, 591, 660, 702, 747, 791, 1263, 1383
MaeII	ACGT	2 cut(s)	196, 1589
MaeIII	GTNAC	3 cut(s)	557, 760, 1354
MalI	GATC	7 cut(s)	155, 273, 751, 867, 884, 1404, 1447
MboI	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
MboII	GAAGA	4 cut(s)	161, 304, 1312, 1315
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	153, 1445
MhlI	GDGCHC	2 cut(s)	355, 1285
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	2 cut(s)	35, 1610
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	3 cut(s)	564, 913, 1043
MmeI	TCCRAC	2 cut(s)	39, 1020
Mox20I	TGGCCA	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	919
MroI	TCCGGA	1 cut(s)	862
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	3 cut(s)	1098, 1410, 1463
MslI	CAYNNNNRTG	5 cut(s)	623, 873, 1004, 1091, 1148
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	4 cut(s)	301, 413, 1202, 1345
MspCI	CTTAAG	1 cut(s)	1409
MspI	CCGG	2 cut(s)	419, 863
MspR9I	CCNGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	1565
MvaI	CCWGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
MwoI	GCNNNNNNNGC	5 cut(s)	365, 410, 413, 1562, 1672
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
NlaIV	GGNNCC	8 cut(s)	265, 305, 324, 417, 634, 682, 1197, 1373
NmuCI	GTSAC	1 cut(s)	1354
NsiI	ATGCAT	1 cut(s)	919
OliI	CACNNNNGTG	2 cut(s)	623, 1091
PctI	GAATGC	1 cut(s)	1565
PfeI	GAWTC	3 cut(s)	224, 859, 1066
PfoI	TCCNGGA	1 cut(s)	958
PinAI	ACCGGT	1 cut(s)	418
PkrI	GCNGC	6 cut(s)	217, 367, 406, 415, 1344, 1564
PleI	GAGTC	3 cut(s)	564, 912, 1042
PpsI	GAGTC	3 cut(s)	564, 912, 1042
Ppu21I	YACGTR	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	648
Psp6I	CCWGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
PspEI	GGTNACC	2 cut(s)	557, 1354
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
PspN4I	GGNNCC	8 cut(s)	265, 305, 324, 417, 634, 682, 1197, 1373
PspPI	GGNCC	3 cut(s)	172, 303, 1503
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	2 cut(s)	153, 1445
PvuII	CAGCTG	2 cut(s)	1202, 1345
RseI	CAYNNNNRTG	5 cut(s)	623, 873, 1004, 1091, 1148
SaqAI	TTAA	3 cut(s)	1098, 1410, 1463
SatI	GCNGC	6 cut(s)	216, 366, 405, 414, 1343, 1563
Sau3AI	GATC	7 cut(s)	153, 271, 749, 865, 882, 1402, 1445
Sau96I	GGNCC	3 cut(s)	172, 303, 1503
SchI	GAGTC	3 cut(s)	564, 913, 1043
ScrFI	CCNGG	8 cut(s)	268, 361, 484, 510, 960, 1110, 1158, 1507
SduI	GDGCHC	2 cut(s)	355, 1285
SexAI	ACCWGGT	2 cut(s)	1156, 1505
SfaNI	GCATC	2 cut(s)	52, 416
SfcI	CTRYAG	1 cut(s)	1071
SgrAI	CRCCGGYG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	303, 1503
SmiMI	CAYNNNNRTG	5 cut(s)	623, 873, 1004, 1091, 1148
SmlI	CTYRAG	3 cut(s)	785, 1245, 1409
SmoI	CTYRAG	3 cut(s)	785, 1245, 1409
Sse9I	AATT	2 cut(s)	35, 1610
SsiI	CCGC	3 cut(s)	301, 413, 1585
SspMI	CTAG	9 cut(s)	162, 330, 591, 660, 702, 747, 791, 1263, 1383
StyD4I	CCNGG	8 cut(s)	266, 359, 482, 508, 958, 1108, 1156, 1505
StyI	CCWWGG	7 cut(s)	72, 144, 168, 228, 771, 1274, 1382
TaaI	ACNGT	4 cut(s)	7, 27, 437, 1695
TaiI	ACGT	2 cut(s)	199, 1592
TaqI	TCGA	3 cut(s)	535, 1175, 1321
TasI	AATT	2 cut(s)	35, 1610
TatI	WGTACW	3 cut(s)	39, 530, 1687
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	3 cut(s)	224, 859, 1066
Tru1I	TTAA	3 cut(s)	1098, 1410, 1463
Tru9I	TTAA	3 cut(s)	1098, 1410, 1463
TscAI	CASTG	4 cut(s)	625, 975, 1093, 1293
TseFI	GTSAC	1 cut(s)	1354
TseI	GCWGC	5 cut(s)	215, 365, 404, 1342, 1562
Tsp45I	GTSAC	1 cut(s)	1354
TspDTI	ATGAA	5 cut(s)	192, 685, 1243, 1558, 1595
TspGWI	ACGGA	1 cut(s)	1696
TspRI	CASTG	4 cut(s)	625, 975, 1093, 1293
Vha464I	CTTAAG	1 cut(s)	1409
VneI	GTGCAC	1 cut(s)	1281
VpaK11BI	GGWCC	2 cut(s)	303, 1503
XapI	RAATTY	1 cut(s)	1610
XmaJI	CCTAGG	1 cut(s)	1382
XspI	CTAG	9 cut(s)	162, 330, 591, 660, 702, 747, 791, 1263, 1383
Zsp2I	ATGCAT	1 cut(s)	919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.