transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 69 - 133 | 1.6e-28 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 401, 475 |
| AcsI | RAATTY | 1 cut(s) | 194 |
| AfaI | GTAC | 3 cut(s) | 398, 477, 504 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 239 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 3 cut(s) | 98, 194, 223 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 186, 218 |
| AluBI | AGCT | 4 cut(s) | 17, 136, 165, 404 |
| AluI | AGCT | 4 cut(s) | 17, 136, 165, 404 |
| AlwI | GGATC | 2 cut(s) | 401, 475 |
| ApoI | RAATTY | 1 cut(s) | 194 |
| AspS9I | GGNCC | 3 cut(s) | 39, 83, 290 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 218 |
| AvaII | GGWCC | 3 cut(s) | 39, 83, 290 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 372, 404, 459, 491 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BciVI | GTATCC | 2 cut(s) | 354, 391 |
| BfaI | CTAG | 2 cut(s) | 357, 485 |
| BfuI | GTATCC | 2 cut(s) | 354, 391 |
| BmcAI | AGTACT | 1 cut(s) | 504 |
| Bme18I | GGWCC | 3 cut(s) | 39, 83, 290 |
| BmgT120I | GGNCC | 3 cut(s) | 39, 83, 290 |
| BmiI | GGNNCC | 2 cut(s) | 6, 41 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 120, 152 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| BsaAI | YACGTR | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 2 cut(s) | 233, 278 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 239 |
| Bse1I | ACTGG | 1 cut(s) | 473 |
| BseDI | CCNNGG | 2 cut(s) | 233, 278 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 239 |
| BseNI | ACTGG | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 239 |
| Bsp143I | GATC | 3 cut(s) | 406, 480, 487 |
| BspLI | GGNNCC | 2 cut(s) | 6, 41 |
| BspPI | GGATC | 2 cut(s) | 401, 475 |
| BsrI | ACTGG | 1 cut(s) | 473 |
| BssECI | CCNNGG | 2 cut(s) | 233, 278 |
| BssMI | GATC | 3 cut(s) | 406, 480, 487 |
| BssT1I | CCWWGG | 2 cut(s) | 233, 278 |
| Bst4CI | ACNGT | 1 cut(s) | 33 |
| BstBAI | YACGTR | 1 cut(s) | 379 |
| BstDEI | CTNAG | 2 cut(s) | 272, 443 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstKTI | GATC | 3 cut(s) | 409, 483, 490 |
| BstMBI | GATC | 3 cut(s) | 406, 480, 487 |
| BstNSI | RCATGY | 1 cut(s) | 419 |
| BstX2I | RGATCY | 1 cut(s) | 480 |
| BstYI | RGATCY | 1 cut(s) | 480 |
| BsuI | GTATCC | 2 cut(s) | 354, 391 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 3 cut(s) | 39, 83, 290 |
| Csp6I | GTAC | 3 cut(s) | 397, 476, 503 |
| CviAII | CATG | 3 cut(s) | 365, 385, 416 |
| CviJI | RGCY | 6 cut(s) | 5, 17, 136, 146, 165, 404 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 17, 136, 146, 165, 404 |
| CviQI | GTAC | 3 cut(s) | 397, 476, 503 |
| DdeI | CTNAG | 2 cut(s) | 272, 443 |
| DpnI | GATC | 3 cut(s) | 408, 482, 489 |
| DpnII | GATC | 3 cut(s) | 406, 480, 487 |
| Eco130I | CCWWGG | 2 cut(s) | 233, 278 |
| Eco47I | GGWCC | 3 cut(s) | 39, 83, 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 39 |
| EcoRI | GAATTC | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 2 cut(s) | 233, 278 |
| ErhI | CCWWGG | 2 cut(s) | 233, 278 |
| FaeI | CATG | 3 cut(s) | 368, 388, 419 |
| FatI | CATG | 3 cut(s) | 364, 384, 415 |
| FauNDI | CATATG | 1 cut(s) | 460 |
| FokI | GGATG | 1 cut(s) | 68 |
| FspBI | CTAG | 2 cut(s) | 357, 485 |
| Hin1II | CATG | 3 cut(s) | 368, 388, 419 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HphI | GGTGA | 2 cut(s) | 133, 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 1 cut(s) | 509 |
| Hpy188III | TCNNGA | 4 cut(s) | 86, 139, 191, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| Hpy99I | CGWCG | 1 cut(s) | 495 |
| HpyAV | CCTTC | 2 cut(s) | 232, 420 |
| HpyCH4III | ACNGT | 1 cut(s) | 33 |
| HpyCH4IV | ACGT | 2 cut(s) | 262, 378 |
| HpyF3I | CTNAG | 2 cut(s) | 272, 443 |
| HpySE526I | ACGT | 2 cut(s) | 262, 378 |
| Hsp92II | CATG | 3 cut(s) | 368, 388, 419 |
| Kzo9I | GATC | 3 cut(s) | 406, 480, 487 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 2 cut(s) | 99, 486 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 2 cut(s) | 357, 485 |
| MaeII | ACGT | 2 cut(s) | 262, 378 |
| MalI | GATC | 3 cut(s) | 408, 482, 489 |
| MboI | GATC | 3 cut(s) | 406, 480, 487 |
| MboII | GAAGA | 2 cut(s) | 476, 479 |
| MflI | RGATCY | 1 cut(s) | 480 |
| MluCI | AATT | 5 cut(s) | 90, 114, 194, 300, 312 |
| MnlI | CCTC | 2 cut(s) | 354, 440 |
| MseI | TTAA | 2 cut(s) | 117, 455 |
| NdeI | CATATG | 1 cut(s) | 460 |
| NdeII | GATC | 3 cut(s) | 406, 480, 487 |
| NlaIII | CATG | 3 cut(s) | 368, 388, 419 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 41 |
| NspI | RCATGY | 1 cut(s) | 419 |
| PciI | ACATGT | 1 cut(s) | 415 |
| Ppu21I | YACGTR | 1 cut(s) | 379 |
| PpuMI | RGGWCCY | 1 cut(s) | 39 |
| PscI | ACATGT | 1 cut(s) | 415 |
| Psp5II | RGGWCCY | 1 cut(s) | 39 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 41 |
| PspPI | GGNCC | 3 cut(s) | 39, 83, 290 |
| PspPPI | RGGWCCY | 1 cut(s) | 39 |
| PsuI | RGATCY | 1 cut(s) | 480 |
| RsaI | GTAC | 3 cut(s) | 398, 477, 504 |
| RsaNI | GTAC | 3 cut(s) | 397, 476, 503 |
| SaqAI | TTAA | 2 cut(s) | 117, 455 |
| Sau3AI | GATC | 3 cut(s) | 406, 480, 487 |
| Sau96I | GGNCC | 3 cut(s) | 39, 83, 290 |
| ScaI | AGTACT | 1 cut(s) | 504 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SinI | GGWCC | 3 cut(s) | 39, 83, 290 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 5 cut(s) | 90, 114, 194, 300, 312 |
| SspMI | CTAG | 2 cut(s) | 357, 485 |
| StyI | CCWWGG | 2 cut(s) | 233, 278 |
| TaaI | ACNGT | 1 cut(s) | 33 |
| TaiI | ACGT | 2 cut(s) | 265, 381 |
| TasI | AATT | 5 cut(s) | 90, 114, 194, 300, 312 |
| TatI | WGTACW | 3 cut(s) | 396, 475, 502 |
| Tru1I | TTAA | 2 cut(s) | 117, 455 |
| Tru9I | TTAA | 2 cut(s) | 117, 455 |
| TscAI | CASTG | 1 cut(s) | 38 |
| TspDTI | ATGAA | 3 cut(s) | 72, 312, 477 |
| TspRI | CASTG | 1 cut(s) | 38 |
| VpaK11BI | GGWCC | 3 cut(s) | 39, 83, 290 |
| XapI | RAATTY | 1 cut(s) | 194 |
| XceI | RCATGY | 1 cut(s) | 419 |
| XspI | CTAG | 2 cut(s) | 357, 485 |
| ZrmI | AGTACT | 1 cut(s) | 504 |