FvH4_3g30772

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Reverse (-)
24182760 .. 24187728
4969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30772.t1

Sequence Viewer

Length: 2127 bp
ATGAGCAGACGTGTGTGCAATGAGGTCCCAAAGAAAGTCCAAAAGAAGGCCCAAGTTGCCCAAGAAGAGGAGGAGGAGGAAGTTGAAATTTCCAAGAATGATTTGGAGGCAGATCCTGCCACTTCTAGAGTTGAAAGAAAACCGCCCCAACCAACTGAATCGCACAAAGGTACTATGCCTCCTAGGCGCCCACTGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTCATGGATCGAGCTCCACGCCCTCCTACTGTAAAAAGGAGAGAAGTGTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGAGATGTCAGAAGAAAGGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTGGCCAGCAGAAATGTTGAGGATGCGCTGAATATGTCGTGGGAGCAGTTTAAGACTCTCTTCTTGGGGCAGTATTTCAGTCCTGCCCACCGTAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTCCAGGAGAGATTCACTTCCCTGAGCTATCATGTGTCATATCTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTTATTGGGGCTCTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTAATGCTGTTCATGCAGCCATGGCCATCGAGTCTATGGGGATTTATAGTGCTCTGCCACGAGATTTCGGTGGTCCCAGTCAAGGTCCATCCAAGAAAGCTGCTTCATCATCTGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCATTCTCGGTTCAGGGTTAGAGGACGTCACAAGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTCGGGTGGCAGTTTCCATGGTGGGTCATCCGGTAGCCAGACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTGGTCAGGACCACTTTAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGCCCTCCATGCCAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTATTTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTGTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAGTTTGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGATTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGCTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

709

Amino Acids

77.69

Weight (kDa)

6.96

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 150 - 245 5.4e-15 Retrotransposon gag protein
RVP_2 PF08284 430 - 560 2.9e-33 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 976, 1285
Acc36I ACCTGC 1 cut(s) 994
AccB1I GGYRCC 5 cut(s) 186, 359, 1223, 1954, 2087
AccII CGCG 1 cut(s) 1296
AccIII TCCGGA 1 cut(s) 1858
AciI CCGC 5 cut(s) 143, 1261, 1743, 1976, 2060
AclWI GGATC 4 cut(s) 107, 297, 946, 1391
AcoI YGGCCR 2 cut(s) 498, 810
AcsI RAATTY 2 cut(s) 87, 594
AcuI CTGAAG 2 cut(s) 888, 1185
AcyI GRCGYC 4 cut(s) 187, 973, 1282, 1955
AfaI GTAC 3 cut(s) 172, 1333, 1357
AfiI CCNNNNNNNGG 5 cut(s) 46, 67, 869, 1153, 1324
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 8 cut(s) 86, 134, 335, 355, 1658, 1984, 1993, 2000
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 6 cut(s) 465, 651, 710, 1227, 1468, 1882
AluBI AGCT 9 cut(s) 296, 338, 675, 887, 917, 1205, 1640, 1793, 2119
AluI AGCT 9 cut(s) 296, 338, 675, 887, 917, 1205, 1640, 1793, 2119
Alw21I GWGCWC 4 cut(s) 298, 422, 841, 2059
Alw26I GTCTC 5 cut(s) 976, 1467, 1491, 2049, 2089
AlwI GGATC 4 cut(s) 107, 297, 946, 1391
AlwNI CAGNNNCTG 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 1858
AoxI GGCC 4 cut(s) 48, 498, 810, 2033
ApeKI GCWGC 7 cut(s) 803, 887, 1009, 1084, 1087, 1090, 1751
ApoI RAATTY 2 cut(s) 87, 594
AseI ATTAAT 1 cut(s) 1364
Asp700I GAANNNNTTC 2 cut(s) 1836, 1926
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 4 cut(s) 189, 523, 1298, 1957
AspS9I GGNCC 8 cut(s) 25, 49, 368, 708, 860, 872, 1126, 1164
AsuC2I CCSGG 2 cut(s) 1401, 1932
AsuHPI GGTGA 3 cut(s) 457, 1511, 1516
AsuII TTCGAA 1 cut(s) 1675
AvaII GGWCC 7 cut(s) 25, 368, 708, 860, 872, 1126, 1164
AvrII CCTAGG 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 1872
BaeGI GKGCMC 1 cut(s) 1228
BalI TGGCCA 2 cut(s) 500, 812
BanI GGYRCC 5 cut(s) 186, 359, 1223, 1954, 2087
BanII GRGCYC 2 cut(s) 298, 736
BarI GAAGNNNNNNTAC 2 cut(s) 1656, 1688
BauI CACGAG 1 cut(s) 846
BbsI GAAGAC 1 cut(s) 1191
Bbv12I GWGCWC 4 cut(s) 298, 422, 841, 2059
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 7 cut(s) 815, 874, 1021, 1096, 1099, 1102, 1738
BccI CCATC 7 cut(s) 445, 709, 821, 883, 1462, 1679, 2078
BcgI CGANNNNNNTGC 2 cut(s) 1310, 1344
BciT130I CCWGG 6 cut(s) 467, 653, 712, 1229, 1470, 1884
BciVI GTATCC 1 cut(s) 1798
BcnI CCSGG 2 cut(s) 1401, 1932
BcoDI GTCTC 5 cut(s) 976, 1467, 1491, 2049, 2089
BfaI CTAG 7 cut(s) 126, 183, 990, 1215, 1299, 1425, 2037
BfmI CTRYAG 2 cut(s) 1842, 1917
BfoI RGCGCY 2 cut(s) 190, 1958
BfuAI ACCTGC 1 cut(s) 994
BfuI GTATCC 1 cut(s) 1798
BglI GCCNNNNNGGC 1 cut(s) 184
BisI GCNGC 7 cut(s) 804, 888, 1010, 1085, 1088, 1091, 1752
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 7 cut(s) 805, 889, 1011, 1086, 1089, 1092, 1753
Bme1390I CCNGG 8 cut(s) 467, 653, 712, 1229, 1401, 1470, 1884, 1932
Bme18I GGWCC 7 cut(s) 25, 368, 708, 860, 872, 1126, 1164
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 8 cut(s) 25, 49, 368, 708, 860, 872, 1126, 1164
BmrFI CCNGG 8 cut(s) 467, 653, 712, 1229, 1401, 1470, 1884, 1932
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 367, 508
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 1191
BplI GAGNNNNNCTC 2 cut(s) 1153, 1185
BpmI CTGGAG 4 cut(s) 360, 1227, 1323, 1956
Bpu10I CCTNAGC 2 cut(s) 275, 671
Bpu14I TTCGAA 1 cut(s) 1675
BpuMI CCSGG 2 cut(s) 1401, 1932
BsaHI GRCGYC 4 cut(s) 187, 973, 1282, 1955
BsaI GGTCTC 1 cut(s) 976
BsaJI CCNNGG 8 cut(s) 182, 363, 807, 1045, 1227, 1228, 1705, 2048
BsaWI WCCGGW 3 cut(s) 1058, 1496, 1858
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 67, 869, 1153, 1324
Bse1I ACTGG 4 cut(s) 255, 491, 864, 997
Bse21I CCTNAGG 1 cut(s) 1872
Bse3DI GCAATG 2 cut(s) 25, 241
BseAI TCCGGA 1 cut(s) 1858
BseBI CCWGG 6 cut(s) 467, 653, 712, 1229, 1470, 1884
BseDI CCNNGG 8 cut(s) 182, 363, 807, 1045, 1227, 1228, 1705, 2048
BseGI GGATG 8 cut(s) 286, 475, 523, 634, 720, 875, 1055, 1867
BseLI CCNNNNNNNGG 5 cut(s) 46, 67, 869, 1153, 1324
BseMI GCAATG 2 cut(s) 25, 241
BseMII CTCAG 7 cut(s) 266, 662, 1172, 1196, 1271, 1863, 1964
BseNI ACTGG 4 cut(s) 255, 491, 864, 997
BseRI GAGGAG 4 cut(s) 83, 86, 89, 1889
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 7 cut(s) 815, 874, 1021, 1096, 1099, 1102, 1738
BseYI CCCAGC 1 cut(s) 1317
Bsh1236I CGCG 1 cut(s) 1296
BshFI GGCC 4 cut(s) 50, 500, 812, 2035
BshNI GGYRCC 5 cut(s) 186, 359, 1223, 1954, 2087
BsiHKAI GWGCWC 4 cut(s) 298, 422, 841, 2059
BsiSI CCGG 5 cut(s) 1059, 1401, 1497, 1859, 1932
BslFI GGGAC 5 cut(s) 11, 261, 381, 846, 1269
BslI CCNNNNNNNGG 5 cut(s) 46, 67, 869, 1153, 1324
BsmAI GTCTC 5 cut(s) 976, 1467, 1491, 2049, 2089
BsmBI CGTCTC 1 cut(s) 1467
BsmFI GGGAC 5 cut(s) 11, 261, 381, 846, 1269
BsmI GAATGC 1 cut(s) 1411
BsnI GGCC 4 cut(s) 50, 500, 812, 2035
Bso31I GGTCTC 1 cut(s) 976
Bsp119I TTCGAA 1 cut(s) 1675
Bsp1286I GDGCHC 6 cut(s) 298, 422, 736, 841, 1228, 2059
Bsp13I TCCGGA 1 cut(s) 1858
Bsp143I GATC 5 cut(s) 112, 289, 938, 1396, 1605
Bsp19I CCATGG 3 cut(s) 807, 1045, 2048
BspACI CCGC 5 cut(s) 143, 1261, 1743, 1976, 2060
BspANI GGCC 4 cut(s) 50, 500, 812, 2035
BspCNI CTCAG 7 cut(s) 267, 663, 1171, 1195, 1270, 1864, 1963
BspEI TCCGGA 1 cut(s) 1858
BspFNI CGCG 1 cut(s) 1296
BspMI ACCTGC 1 cut(s) 994
BspPI GGATC 4 cut(s) 107, 297, 946, 1391
BspT104I TTCGAA 1 cut(s) 1675
BspT107I GGYRCC 5 cut(s) 186, 359, 1223, 1954, 2087
BspTNI GGTCTC 1 cut(s) 976
BsrDI GCAATG 2 cut(s) 25, 241
BsrI ACTGG 4 cut(s) 255, 491, 864, 997
BssECI CCNNGG 8 cut(s) 182, 363, 807, 1045, 1227, 1228, 1705, 2048
BssMI GATC 5 cut(s) 112, 289, 938, 1396, 1605
BssNI GRCGYC 4 cut(s) 187, 973, 1282, 1955
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 6 cut(s) 182, 363, 807, 1045, 1705, 2048
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 6 cut(s) 467, 653, 712, 1229, 1470, 1884
Bst4CI ACNGT 2 cut(s) 313, 587
Bst6I CTCTTC 4 cut(s) 60, 560, 617, 1470
BstACI GRCGYC 4 cut(s) 187, 973, 1282, 1955
BstAPI GCANNNNNTGC 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 1675
BstC8I GCNNGC 5 cut(s) 418, 498, 502, 1308, 1380
BstDEI CTNAG 7 cut(s) 275, 671, 1158, 1182, 1257, 1872, 1950
BstDSI CCRYGG 3 cut(s) 807, 1045, 2048
BstF5I GGATG 8 cut(s) 286, 475, 523, 634, 720, 875, 1055, 1867
BstFNI CGCG 1 cut(s) 1296
BstH2I RGCGCY 2 cut(s) 190, 1958
BstHHI GCGC 4 cut(s) 189, 523, 1298, 1957
BstKTI GATC 5 cut(s) 115, 292, 941, 1399, 1608
BstMAI GTCTC 5 cut(s) 976, 1467, 1491, 2049, 2089
BstMBI GATC 5 cut(s) 112, 289, 938, 1396, 1605
BstNI CCWGG 6 cut(s) 467, 653, 712, 1229, 1470, 1884
BstNSI RCATGY 3 cut(s) 1310, 1484, 2044
BstSCI CCNGG 8 cut(s) 465, 651, 710, 1227, 1399, 1468, 1882, 1930
BstSFI CTRYAG 2 cut(s) 1842, 1917
BstSLI GKGCMC 1 cut(s) 1228
BstUI CGCG 1 cut(s) 1296
BstV1I GCAGC 7 cut(s) 815, 874, 1021, 1096, 1099, 1102, 1738
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 1476
BstYI RGATCY 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 1872
BsuI GTATCC 1 cut(s) 1798
BsuRI GGCC 4 cut(s) 50, 500, 812, 2035
BtgI CCRYGG 3 cut(s) 807, 1045, 2048
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 8 cut(s) 286, 475, 523, 634, 720, 875, 1055, 1867
BtsI GCAGTG 2 cut(s) 191, 1240
BtsIMutI CAGTG 3 cut(s) 191, 484, 1240
BveI ACCTGC 1 cut(s) 994
Cac8I GCNNGC 5 cut(s) 418, 498, 502, 1308, 1380
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 4 cut(s) 189, 523, 1298, 1957
Cfr13I GGNCC 8 cut(s) 25, 49, 368, 708, 860, 872, 1126, 1164
Csp6I GTAC 3 cut(s) 171, 1332, 1356
CviQI GTAC 3 cut(s) 171, 1332, 1356
DdeI CTNAG 7 cut(s) 275, 671, 1158, 1182, 1257, 1872, 1950
DinI GGCGCC 2 cut(s) 188, 1956
DpnI GATC 5 cut(s) 114, 291, 940, 1398, 1607
DpnII GATC 5 cut(s) 112, 289, 938, 1396, 1605
EaeI YGGCCR 2 cut(s) 498, 810
Eam1104I CTCTTC 4 cut(s) 60, 560, 617, 1470
EarI CTCTTC 4 cut(s) 60, 560, 617, 1470
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 6 cut(s) 182, 363, 807, 1045, 1705, 2048
Eco24I GRGCYC 2 cut(s) 298, 736
Eco31I GGTCTC 1 cut(s) 976
Eco47I GGWCC 7 cut(s) 25, 368, 708, 860, 872, 1126, 1164
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 888, 1185
Eco81I CCTNAGG 1 cut(s) 1872
EcoICRI GAGCTC 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 25, 368
EcoRI GAATTC 1 cut(s) 594
EcoRII CCWGG 6 cut(s) 465, 651, 710, 1227, 1468, 1882
EcoT14I CCWWGG 6 cut(s) 182, 363, 807, 1045, 1705, 2048
EcoT22I ATGCAT 1 cut(s) 2105
EcoT38I GRGCYC 2 cut(s) 298, 736
EgeI GGCGCC 2 cut(s) 188, 1956
EheI GGCGCC 2 cut(s) 188, 1956
ErhI CCWWGG 6 cut(s) 182, 363, 807, 1045, 1705, 2048
Esp3I CGTCTC 1 cut(s) 1467
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 5 cut(s) 11, 261, 381, 846, 1269
FauI CCCGC 1 cut(s) 1254
Fnu4HI GCNGC 7 cut(s) 804, 888, 1010, 1085, 1088, 1091, 1752
FokI GGATG 8 cut(s) 293, 482, 530, 641, 727, 862, 1042, 1874
FriOI GRGCYC 2 cut(s) 298, 736
Fsp4HI GCNGC 7 cut(s) 804, 888, 1010, 1085, 1088, 1091, 1752
FspBI CTAG 7 cut(s) 126, 183, 990, 1215, 1299, 1425, 2037
GlaI GCGC 4 cut(s) 188, 522, 1297, 1956
GluI GCNGC 7 cut(s) 804, 888, 1010, 1085, 1088, 1091, 1752
GsaI CCCAGC 1 cut(s) 1321
GsuI CTGGAG 4 cut(s) 360, 1227, 1323, 1956
HaeII RGCGCY 2 cut(s) 190, 1958
HaeIII GGCC 4 cut(s) 50, 500, 812, 2035
HapII CCGG 5 cut(s) 1059, 1401, 1497, 1859, 1932
HhaI GCGC 4 cut(s) 189, 523, 1298, 1957
Hin1I GRCGYC 4 cut(s) 187, 973, 1282, 1955
Hin6I GCGC 4 cut(s) 187, 521, 1296, 1955
HinP1I GCGC 4 cut(s) 187, 521, 1296, 1955
HinfI GANTC 8 cut(s) 158, 473, 550, 660, 818, 1291, 1431, 1996
HpaII CCGG 5 cut(s) 1059, 1401, 1497, 1859, 1932
HphI GGTGA 3 cut(s) 457, 1511, 1516
Hpy166II GTNNAC 2 cut(s) 394, 1280
Hpy188I TCNGA 4 cut(s) 433, 604, 1161, 1247
Hpy188III TCNNGA 8 cut(s) 126, 610, 698, 1124, 1340, 1682, 1859, 1871
Hpy8I GTNNAC 2 cut(s) 394, 1280
HpyAV CCTTC 4 cut(s) 40, 224, 436, 1544
HpyCH4III ACNGT 2 cut(s) 313, 587
HpyCH4IV ACGT 4 cut(s) 10, 973, 1282, 1358
HpyF3I CTNAG 7 cut(s) 275, 671, 1158, 1182, 1257, 1872, 1950
HpySE526I ACGT 4 cut(s) 10, 973, 1282, 1358
Hsp92I GRCGYC 4 cut(s) 187, 973, 1282, 1955
HspAI GCGC 4 cut(s) 187, 521, 1296, 1955
KasI GGCGCC 2 cut(s) 186, 1954
KflI GGGWCCC 1 cut(s) 368
Kpn2I TCCGGA 1 cut(s) 1858
Kzo9I GATC 5 cut(s) 112, 289, 938, 1396, 1605
LmnI GCTCC 7 cut(s) 301, 341, 538, 993, 1403, 1975, 2062
Lsp1109I GCAGC 7 cut(s) 815, 874, 1021, 1096, 1099, 1102, 1738
LweI GCATC 2 cut(s) 367, 508
MaeI CTAG 7 cut(s) 126, 183, 990, 1215, 1299, 1425, 2037
MaeII ACGT 4 cut(s) 10, 973, 1282, 1358
MaeIII GTNAC 2 cut(s) 457, 974
MalI GATC 5 cut(s) 114, 291, 940, 1398, 1607
MboI GATC 5 cut(s) 112, 289, 938, 1396, 1605
MfeI CAATTG 1 cut(s) 2000
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 6 cut(s) 298, 422, 736, 841, 1228, 2059
MlsI TGGCCA 2 cut(s) 500, 812
MluNI TGGCCA 2 cut(s) 500, 812
Mly113I GGCGCC 2 cut(s) 187, 1955
MlyI GAGTC 3 cut(s) 544, 827, 1285
MmeI TCCRAC 1 cut(s) 582
Mox20I TGGCCA 2 cut(s) 500, 812
Mph1103I ATGCAT 1 cut(s) 2105
MroI TCCGGA 1 cut(s) 1858
MroXI GAANNNNTTC 2 cut(s) 1836, 1926
MscI TGGCCA 2 cut(s) 500, 812
MseI TTAA 5 cut(s) 546, 1364, 1391, 1574, 2073
MslI CAYNNNNRTG 2 cut(s) 425, 1446
Msp20I TGGCCA 2 cut(s) 500, 812
MspA1I CMGCKG 6 cut(s) 917, 1205, 1261, 1745, 1976, 2062
MspI CCGG 5 cut(s) 1059, 1401, 1497, 1859, 1932
MspR9I CCNGG 8 cut(s) 467, 653, 712, 1229, 1401, 1470, 1884, 1932
MunI CAATTG 1 cut(s) 2000
Mva1269I GAATGC 1 cut(s) 1411
MvaI CCWGG 6 cut(s) 467, 653, 712, 1229, 1470, 1884
MvnI CGCG 1 cut(s) 1296
NarI GGCGCC 2 cut(s) 187, 1955
NciI CCSGG 2 cut(s) 1401, 1932
NcoI CCATGG 3 cut(s) 807, 1045, 2048
NdeII GATC 5 cut(s) 112, 289, 938, 1396, 1605
NmuCI GTSAC 1 cut(s) 974
NsiI ATGCAT 1 cut(s) 2105
NspI RCATGY 3 cut(s) 1310, 1484, 2044
NspV TTCGAA 1 cut(s) 1675
PaeI GCATGC 1 cut(s) 1310
PasI CCCWGGG 1 cut(s) 1228
PctI GAATGC 1 cut(s) 1411
PdmI GAANNNNTTC 2 cut(s) 1836, 1926
PfeI GAWTC 5 cut(s) 158, 473, 660, 1431, 1996
PfoI TCCNGGA 4 cut(s) 465, 651, 1399, 1930
PkrI GCNGC 7 cut(s) 805, 889, 1011, 1086, 1089, 1092, 1753
PleI GAGTC 3 cut(s) 544, 826, 1285
PluTI GGCGCC 2 cut(s) 190, 1958
PpsI GAGTC 3 cut(s) 544, 826, 1285
PpuMI RGGWCCY 2 cut(s) 25, 368
PshBI ATTAAT 1 cut(s) 1364
Psp124BI GAGCTC 1 cut(s) 298
Psp5II RGGWCCY 2 cut(s) 25, 368
Psp6I CCWGG 6 cut(s) 465, 651, 710, 1227, 1468, 1882
PspFI CCCAGC 1 cut(s) 1317
PspGI CCWGG 6 cut(s) 465, 651, 710, 1227, 1468, 1882
PspPI GGNCC 8 cut(s) 25, 49, 368, 708, 860, 872, 1126, 1164
PspPPI RGGWCCY 2 cut(s) 25, 368
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 2 cut(s) 917, 1205
RsaI GTAC 3 cut(s) 172, 1333, 1357
RsaNI GTAC 3 cut(s) 171, 1332, 1356
RseI CAYNNNNRTG 2 cut(s) 425, 1446
SacI GAGCTC 1 cut(s) 298
SaqAI TTAA 5 cut(s) 546, 1364, 1391, 1574, 2073
SatI GCNGC 7 cut(s) 804, 888, 1010, 1085, 1088, 1091, 1752
Sau3AI GATC 5 cut(s) 112, 289, 938, 1396, 1605
Sau96I GGNCC 8 cut(s) 25, 49, 368, 708, 860, 872, 1126, 1164
SchI GAGTC 3 cut(s) 544, 827, 1285
ScrFI CCNGG 8 cut(s) 467, 653, 712, 1229, 1401, 1470, 1884, 1932
SduI GDGCHC 6 cut(s) 298, 422, 736, 841, 1228, 2059
SfaNI GCATC 2 cut(s) 367, 508
SfcI CTRYAG 2 cut(s) 1842, 1917
SfoI GGCGCC 2 cut(s) 188, 1956
SfuI TTCGAA 1 cut(s) 1675
SinI GGWCC 7 cut(s) 25, 368, 708, 860, 872, 1126, 1164
SmiMI CAYNNNNRTG 2 cut(s) 425, 1446
SphI GCATGC 1 cut(s) 1310
SsiI CCGC 5 cut(s) 143, 1261, 1743, 1976, 2060
SspDI GGCGCC 2 cut(s) 186, 1954
SspMI CTAG 7 cut(s) 126, 183, 990, 1215, 1299, 1425, 2037
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 8 cut(s) 465, 651, 710, 1227, 1399, 1468, 1882, 1930
StyI CCWWGG 6 cut(s) 182, 363, 807, 1045, 1705, 2048
TaaI ACNGT 2 cut(s) 313, 587
TaiI ACGT 4 cut(s) 13, 976, 1285, 1361
TaqI TCGA 6 cut(s) 215, 292, 816, 1429, 1563, 1675
TaqII GACCGA 1 cut(s) 1231
TfiI GAWTC 5 cut(s) 158, 473, 660, 1431, 1996
Tru1I TTAA 5 cut(s) 546, 1364, 1391, 1574, 2073
Tru9I TTAA 5 cut(s) 546, 1364, 1391, 1574, 2073
TscAI CASTG 3 cut(s) 198, 491, 1240
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 7 cut(s) 803, 887, 1009, 1084, 1087, 1090, 1751
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 7 cut(s) 243, 632, 788, 882, 900, 1404, 1408
TspRI CASTG 3 cut(s) 198, 491, 1240
VpaK11BI GGWCC 7 cut(s) 25, 368, 708, 860, 872, 1126, 1164
VspI ATTAAT 1 cut(s) 1364
XapI RAATTY 2 cut(s) 87, 594
XbaI TCTAGA 1 cut(s) 125
XceI RCATGY 3 cut(s) 1310, 1484, 2044
XcmI CCANNNNNNNNNTGG 2 cut(s) 100, 820
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 1836, 1926
XspI CTAG 7 cut(s) 126, 183, 990, 1215, 1299, 1425, 2037
ZraI GACGTC 2 cut(s) 974, 1283
Zsp2I ATGCAT 1 cut(s) 2105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.