Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

19350248 .. 19351826

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15587.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGATGCAGTAGACTTGGCACGGCAGTTCATTCGGGGTTTGAGGCATGAGCTCTGGAAGTTGGTGACTTCCCACCGGTTTGCTACTCTAGCAGAAGCGGTGGAGAGTGCCCTTGCAGTTGAGCAGAAGGAGGTGATGCATGAGATGGAGAGGCAGAGAGATGTCCAAGGGAAGGGCAAGGCCCTGGCGGGGAGTAGCAGCTCAGGGGACCATAGAGGTGGTTATGGGAAGAGGCGGCGGACTCATCAGCTGGCTCCAGTTAGAGCAGCAGCTGCACCTATTAGGGCTCCACCTATTAGGGCTCCACCTATTAGGCAGGCAGCACCATTGAAGTGTTTCAACTGTGGAGTGGAAGGTACCATTCTTGTTTATGATCTGCTTGCTTCTGTTTTGTTTGACACGGGGGCAACCCGTTCCTTCATATCTAGCTCAGTGGTGAGGGCATTAGGCTTGACTCCGACGCCGCTTACTAGATCCTTGTGTGTTTCTTCGCCTCTCGGTGTTTCTATTGAGCTGGGCACTTTGTGTGATGCTTGCCCTATAGTGATTAGTGGGAGAGAGTTCCTTGCTTCCCTGATTGTGATTCCAGACCGCTCCTATGATGTGATTTTGGGAGTGGATTGGCTAAGGCCAAACCATGCCTTGATTGACTGTTTTGGTATGGTAGTGTCATTCCACATTCCTGGACAGCCGAGCTTTCGCTATCGTTGTCATAGGTCGGACACGGCCATGTGGGAAGGAGTGTTGGCACACATTGAGGCTACCGGTAGTACCGTGGGTATTGCGGATATTGCAGTAGTCTATGAGTTTAGTGACGTGTTCCAGGAGATTCCGGGGTTACCTCCTAAGAGGGTAGTGGAGTTTGCTATCGATGTGGTACCAGGTACTTCACCGGTGTCAAAGACTCCTTATCAAATGGGGAGAACTGATCTTCAGGAGTTGAAGGTTCAGATTAAGGGTCTTCTCGAGCAGGGATTCATTAGACCTAGCACCTCGCCTTGGGGTGCACCGGTGTTGTTTGTGACGAAGAAGGATGATACACTCCGATTGTGTGTGGACTATCGGGAGTTGAACAAGGTGACCATCAAGAATAGGTATCCCTTTCCTAGGATTGATGATTTGTTTGATCAGCTTAGAGGTGCTACAGTATTCTCTAAGATTGATCTGAGGTCCAGTTATCACCAGTTGAGGGTGAAGGAGGAGGATATTCCGAAGACCGCTTTTAGGTCTAGATATGGGCATTATGAGTTTGTTGTTATGCCTTTTGTTCTAACAAATGCCCCTGCTGCTTTTATGGATTTGATGAACTGCATGTTCAGTCCTTATCTGGATGTGTTTGTAGTAGTATTTGTGGATGATATTTTGATTTACTCCAAGACTTTGGAGGATCATGATAAGCACCTACGGATCGTACTACAGGTTCTGAGCATTCGCCCGGGAAACGGCATTCAAAGAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

488

Amino Acids

54.31

Weight (kDa)

8.85

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVP_2	PF08284	117 - 224	4.5e-29	Retroviral aspartyl protease
gag-asp_proteas	PF13975	130 - 210	4.3e-06	gag-polyprotein putative aspartyl protease
RVT_1	PF00078	342 - 475	7.9e-26	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	356, 877
AccB1I	GGYRCC	2 cut(s)	356, 877
AccBSI	CCGCTC	1 cut(s)	594
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	8 cut(s)	98, 188, 235, 238, 464, 592, 785, 1218
AclWI	GGATC	3 cut(s)	468, 1395, 1415
AcoI	YGGCCR	1 cut(s)	726
AcuI	CTGAAG	1 cut(s)	917
AcyI	GRCGYC	1 cut(s)	461
AdeI	CACNNNGTG	1 cut(s)	525
AfaI	GTAC	5 cut(s)	358, 772, 879, 886, 1413
AfiI	CCNNNNNNNGG	7 cut(s)	172, 189, 999, 1107, 1189, 1224, 1442
AflIII	ACRYGT	1 cut(s)	816
AgeI	ACCGGT	4 cut(s)	75, 764, 892, 1009
AgsI	TTSAA	5 cut(s)	331, 340, 943, 1072, 1451
AjiI	CACGTC	1 cut(s)	817
AjnI	CCWGG	4 cut(s)	183, 682, 822, 880
AluBI	AGCT	8 cut(s)	52, 201, 250, 272, 429, 514, 696, 1132
AluI	AGCT	8 cut(s)	52, 201, 250, 272, 429, 514, 696, 1132
Alw21I	GWGCWC	2 cut(s)	54, 1009
Alw44I	GTGCAC	1 cut(s)	1005
AlwI	GGATC	3 cut(s)	468, 1395, 1415
AlwNI	CAGNNNCTG	2 cut(s)	272, 1423
Ama87I	CYCGRG	2 cut(s)	965, 1435
AoxI	GGCC	3 cut(s)	180, 629, 726
ApaLI	GTGCAC	1 cut(s)	1005
ApeKI	GCWGC	6 cut(s)	198, 266, 269, 272, 320, 1286
AsiGI	ACCGGT	4 cut(s)	75, 764, 892, 1009
Asp700I	GAANNNNTTC	1 cut(s)	335
Asp718I	GGTACC	2 cut(s)	356, 877
AspA2I	CCTAGG	1 cut(s)	1106
AspS9I	GGNCC	3 cut(s)	181, 208, 1170
AsuC2I	CCSGG	3 cut(s)	834, 1436, 1437
AsuHPI	GGTGA	7 cut(s)	76, 145, 448, 882, 1090, 1172, 1204
AvaI	CYCGRG	2 cut(s)	965, 1435
AvaII	GGWCC	2 cut(s)	208, 1170
AvrII	CCTAGG	1 cut(s)	1106
BaeGI	GKGCMC	3 cut(s)	112, 521, 1009
BanI	GGYRCC	2 cut(s)	356, 877
BanII	GRGCYC	3 cut(s)	54, 289, 304
BbsI	GAAGAC	2 cut(s)	953, 1220
Bbv12I	GWGCWC	2 cut(s)	54, 1009
BbvI	GCAGC	6 cut(s)	210, 259, 278, 281, 332, 1273
BccI	CCATC	2 cut(s)	139, 1091
BceAI	ACGGC	3 cut(s)	38, 741, 1459
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	4 cut(s)	185, 684, 824, 882
BciVI	GTATCC	1 cut(s)	1107
BclI	TGATCA	1 cut(s)	1126
BcnI	CCSGG	3 cut(s)	834, 1436, 1437
BfaI	CTAG	6 cut(s)	89, 426, 471, 987, 1107, 1230
BfmI	CTRYAG	3 cut(s)	540, 1143, 1415
BfuI	GTATCC	1 cut(s)	1107
BisI	GCNGC	8 cut(s)	199, 236, 267, 270, 273, 321, 464, 1287
BlnI	CCTAGG	1 cut(s)	1106
BlsI	GCNGC	8 cut(s)	200, 237, 268, 271, 274, 322, 465, 1288
Bme1390I	CCNGG	7 cut(s)	185, 684, 824, 834, 882, 1436, 1437
Bme18I	GGWCC	2 cut(s)	208, 1170
BmeT110I	CYCGRG	2 cut(s)	965, 1435
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	3 cut(s)	181, 208, 1170
BmiI	GGNNCC	6 cut(s)	209, 255, 288, 303, 358, 879
BmrFI	CCNGG	7 cut(s)	185, 684, 824, 834, 882, 1436, 1437
BmsI	GCATC	2 cut(s)	126, 520
BpiI	GAAGAC	2 cut(s)	953, 1220
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	2 cut(s)	202, 626
BpuMI	CCSGG	3 cut(s)	834, 1436, 1437
Bsa29I	ATCGAT	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	7 cut(s)	166, 183, 774, 833, 998, 1106, 1435
BsaWI	WCCGGW	4 cut(s)	75, 764, 892, 1009
Bsc4I	CCNNNNNNNGG	7 cut(s)	172, 189, 999, 1107, 1189, 1224, 1442
Bse118I	RCCGGY	4 cut(s)	75, 764, 892, 1009
Bse1I	ACTGG	3 cut(s)	257, 1173, 1183
BseBI	CCWGG	4 cut(s)	185, 684, 824, 882
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	7 cut(s)	166, 183, 774, 833, 998, 1106, 1435
BseGI	GGATG	4 cut(s)	10, 1039, 1336, 1360
BseLI	CCNNNNNNNGG	7 cut(s)	172, 189, 999, 1107, 1189, 1224, 1442
BseMII	CTCAG	4 cut(s)	216, 444, 1157, 1415
BseNI	ACTGG	3 cut(s)	257, 1173, 1183
BseRI	GAGGAG	1 cut(s)	1214
BseSI	GKGCMC	3 cut(s)	112, 521, 1009
BseXI	GCAGC	6 cut(s)	210, 259, 278, 281, 332, 1273
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	182, 631, 728
BshNI	GGYRCC	2 cut(s)	356, 877
BshTI	ACCGGT	4 cut(s)	75, 764, 892, 1009
BshVI	ATCGAT	1 cut(s)	870
BsiHKAI	GWGCWC	2 cut(s)	54, 1009
BsiHKCI	CYCGRG	2 cut(s)	965, 1435
BsiSI	CCGG	6 cut(s)	76, 765, 833, 893, 1010, 1436
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	7 cut(s)	172, 189, 999, 1107, 1189, 1224, 1442
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	1428, 1446
BsnI	GGCC	3 cut(s)	182, 631, 728
BsoBI	CYCGRG	2 cut(s)	965, 1435
Bsp1286I	GDGCHC	6 cut(s)	54, 112, 289, 304, 521, 1009
Bsp143I	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
BspACI	CCGC	8 cut(s)	98, 188, 235, 238, 464, 592, 785, 1218
BspANI	GGCC	3 cut(s)	182, 631, 728
BspCNI	CTCAG	4 cut(s)	215, 443, 1158, 1416
BspDI	ATCGAT	1 cut(s)	870
BspHI	TCATGA	1 cut(s)	1390
BspLI	GGNNCC	6 cut(s)	209, 255, 288, 303, 358, 879
BspPI	GGATC	3 cut(s)	468, 1395, 1415
BspT107I	GGYRCC	2 cut(s)	356, 877
BsrBI	CCGCTC	1 cut(s)	594
BsrFI	RCCGGY	4 cut(s)	75, 764, 892, 1009
BsrI	ACTGG	3 cut(s)	257, 1173, 1183
BssAI	RCCGGY	4 cut(s)	75, 764, 892, 1009
BssECI	CCNNGG	7 cut(s)	166, 183, 774, 833, 998, 1106, 1435
BssMI	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	3 cut(s)	166, 998, 1106
Bst2UI	CCWGG	4 cut(s)	185, 684, 824, 882
Bst4CI	ACNGT	4 cut(s)	344, 653, 775, 1147
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	4 cut(s)	252, 318, 381, 535
BstDEI	CTNAG	8 cut(s)	202, 430, 626, 846, 1133, 1155, 1166, 1424
BstDSI	CCRYGG	1 cut(s)	774
BstEII	GGTNACC	2 cut(s)	837, 1078
BstENI	CCTNNNNNAGG	1 cut(s)	1105
BstF5I	GGATG	4 cut(s)	10, 1039, 1336, 1360
BstKTI	GATC	7 cut(s)	376, 476, 931, 1129, 1165, 1390, 1410
BstMBI	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 272, 791, 1286
BstNI	CCWGG	4 cut(s)	185, 684, 824, 882
BstNSI	RCATGY	1 cut(s)	1315
BstPI	GGTNACC	2 cut(s)	837, 1078
BstSCI	CCNGG	7 cut(s)	183, 682, 822, 832, 880, 1434, 1435
BstSFI	CTRYAG	3 cut(s)	540, 1143, 1415
BstSLI	GKGCMC	3 cut(s)	112, 521, 1009
BstV1I	GCAGC	6 cut(s)	210, 259, 278, 281, 332, 1273
BstV2I	GAAGAC	2 cut(s)	953, 1220
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	3 cut(s)	218, 683, 1381
BstYI	RGATCY	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	1107
BsuRI	GGCC	3 cut(s)	182, 631, 728
BsuTUI	ATCGAT	1 cut(s)	870
BtgI	CCRYGG	1 cut(s)	774
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	4 cut(s)	10, 1039, 1336, 1360
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	4 cut(s)	252, 318, 381, 535
CaiI	CAGNNNCTG	2 cut(s)	272, 1423
CciI	TCATGA	1 cut(s)	1390
Cfr10I	RCCGGY	4 cut(s)	75, 764, 892, 1009
Cfr13I	GGNCC	3 cut(s)	181, 208, 1170
Cfr9I	CCCGGG	1 cut(s)	1435
ClaI	ATCGAT	1 cut(s)	870
CseI	GACGC	1 cut(s)	469
CsiI	ACCWGGT	1 cut(s)	880
Csp6I	GTAC	5 cut(s)	357, 771, 878, 885, 1412
CspAI	ACCGGT	4 cut(s)	75, 764, 892, 1009
CviAII	CATG	6 cut(s)	47, 140, 638, 730, 1312, 1391
CviQI	GTAC	5 cut(s)	357, 771, 878, 885, 1412
DdeI	CTNAG	8 cut(s)	202, 430, 626, 846, 1133, 1155, 1166, 1424
DpnI	GATC	7 cut(s)	375, 475, 930, 1128, 1164, 1389, 1409
DpnII	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
DraIII	CACNNNGTG	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	166, 998, 1106
Eco24I	GRGCYC	3 cut(s)	54, 289, 304
Eco47I	GGWCC	2 cut(s)	208, 1170
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	917
Eco88I	CYCGRG	2 cut(s)	965, 1435
Eco91I	GGTNACC	2 cut(s)	837, 1078
EcoICRI	GAGCTC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	1105
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	2 cut(s)	837, 1078
EcoRII	CCWGG	4 cut(s)	183, 682, 822, 880
EcoT14I	CCWWGG	3 cut(s)	166, 998, 1106
EcoT22I	ATGCAT	1 cut(s)	141
EcoT38I	GRGCYC	3 cut(s)	54, 289, 304
ErhI	CCWWGG	3 cut(s)	166, 998, 1106
FaeI	CATG	6 cut(s)	50, 143, 641, 733, 1315, 1394
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	6 cut(s)	46, 139, 637, 729, 1311, 1390
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	8 cut(s)	199, 236, 267, 270, 273, 321, 464, 1287
FokI	GGATG	4 cut(s)	17, 1046, 1343, 1367
FriOI	GRGCYC	3 cut(s)	54, 289, 304
Fsp4HI	GCNGC	8 cut(s)	199, 236, 267, 270, 273, 321, 464, 1287
FspBI	CTAG	6 cut(s)	89, 426, 471, 987, 1107, 1230
GluI	GCNGC	8 cut(s)	199, 236, 267, 270, 273, 321, 464, 1287
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	182, 631, 728
HapII	CCGG	6 cut(s)	76, 765, 833, 893, 1010, 1436
HgaI	GACGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	6 cut(s)	50, 143, 641, 733, 1315, 1394
HinfI	GANTC	6 cut(s)	241, 454, 583, 829, 904, 975
HpaII	CCGG	6 cut(s)	76, 765, 833, 893, 1010, 1436
HphI	GGTGA	7 cut(s)	76, 145, 448, 882, 1090, 1172, 1204
Hpy166II	GTNNAC	3 cut(s)	13, 1007, 1057
Hpy188I	TCNGA	7 cut(s)	459, 721, 951, 1046, 1167, 1212, 1425
Hpy188III	TCNNGA	9 cut(s)	55, 587, 935, 965, 1064, 1087, 1230, 1328, 1391
Hpy8I	GTNNAC	3 cut(s)	13, 1007, 1057
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	8 cut(s)	121, 166, 347, 427, 731, 937, 1024, 1189
HpyCH4III	ACNGT	4 cut(s)	344, 653, 775, 1147
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	7 cut(s)	8, 116, 139, 275, 794, 1007, 1311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 272, 791, 1286
HpyF3I	CTNAG	8 cut(s)	202, 430, 626, 846, 1133, 1155, 1166, 1424
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	6 cut(s)	50, 143, 641, 733, 1315, 1394
KpnI	GGTACC	2 cut(s)	360, 881
Ksp22I	TGATCA	1 cut(s)	1126
Kzo9I	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
LmnI	GCTCC	4 cut(s)	259, 292, 307, 599
Lsp1109I	GCAGC	6 cut(s)	210, 259, 278, 281, 332, 1273
LweI	GCATC	2 cut(s)	126, 520
MabI	ACCWGGT	1 cut(s)	880
MaeI	CTAG	6 cut(s)	89, 426, 471, 987, 1107, 1230
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	5 cut(s)	64, 812, 837, 1021, 1078
MalI	GATC	7 cut(s)	375, 475, 930, 1128, 1164, 1389, 1409
MbiI	CCGCTC	1 cut(s)	594
MboI	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
MboII	GAAGA	6 cut(s)	241, 480, 923, 953, 1039, 1225
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	6 cut(s)	54, 112, 289, 304, 521, 1009
MlyI	GAGTC	3 cut(s)	235, 448, 898
MmeI	TCCRAC	2 cut(s)	482, 699
Mph1103I	ATGCAT	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	1 cut(s)	954
MslI	CAYNNNNRTG	3 cut(s)	216, 331, 728
MspA1I	CMGCKG	2 cut(s)	250, 272
MspI	CCGG	6 cut(s)	76, 765, 833, 893, 1010, 1436
MspR9I	CCNGG	7 cut(s)	185, 684, 824, 834, 882, 1436, 1437
Mva1269I	GAATGC	2 cut(s)	1428, 1446
MvaI	CCWGG	4 cut(s)	185, 684, 824, 882
MwoI	GCNNNNNNNGC	4 cut(s)	89, 272, 791, 1286
NciI	CCSGG	3 cut(s)	834, 1436, 1437
NdeII	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
NlaIII	CATG	6 cut(s)	50, 143, 641, 733, 1315, 1394
NlaIV	GGNNCC	6 cut(s)	209, 255, 288, 303, 358, 879
NmeAIII	GCCGAG	1 cut(s)	717
NmuCI	GTSAC	4 cut(s)	64, 812, 1021, 1078
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	1 cut(s)	1315
PaeR7I	CTCGAG	1 cut(s)	965
PagI	TCATGA	1 cut(s)	1390
PctI	GAATGC	2 cut(s)	1428, 1446
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	583, 829, 975
PfoI	TCCNGGA	2 cut(s)	682, 822
PinAI	ACCGGT	4 cut(s)	75, 764, 892, 1009
PkrI	GCNGC	8 cut(s)	200, 237, 268, 271, 274, 322, 465, 1288
PleI	GAGTC	3 cut(s)	235, 448, 898
PpsI	GAGTC	3 cut(s)	235, 448, 898
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	4 cut(s)	183, 682, 822, 880
PspEI	GGTNACC	2 cut(s)	837, 1078
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	4 cut(s)	183, 682, 822, 880
PspN4I	GGNNCC	6 cut(s)	209, 255, 288, 303, 358, 879
PspPI	GGNCC	3 cut(s)	181, 208, 1170
PsrI	GAACNNNNNNTAC	2 cut(s)	1404, 1436
PstNI	CAGNNNCTG	2 cut(s)	272, 1423
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	2 cut(s)	250, 272
RsaI	GTAC	5 cut(s)	358, 772, 879, 886, 1413
RsaNI	GTAC	5 cut(s)	357, 771, 878, 885, 1412
RseI	CAYNNNNRTG	3 cut(s)	216, 331, 728
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	954
SatI	GCNGC	8 cut(s)	199, 236, 267, 270, 273, 321, 464, 1287
Sau3AI	GATC	7 cut(s)	373, 473, 928, 1126, 1162, 1387, 1407
Sau96I	GGNCC	3 cut(s)	181, 208, 1170
SchI	GAGTC	3 cut(s)	235, 448, 898
ScrFI	CCNGG	7 cut(s)	185, 684, 824, 834, 882, 1436, 1437
SduI	GDGCHC	6 cut(s)	54, 112, 289, 304, 521, 1009
SexAI	ACCWGGT	1 cut(s)	880
SfaNI	GCATC	2 cut(s)	126, 520
SfcI	CTRYAG	3 cut(s)	540, 1143, 1415
Sfr274I	CTCGAG	1 cut(s)	965
SgrAI	CRCCGGYG	2 cut(s)	892, 1009
SinI	GGWCC	2 cut(s)	208, 1170
SlaI	CTCGAG	1 cut(s)	965
SmaI	CCCGGG	1 cut(s)	1437
SmiMI	CAYNNNNRTG	3 cut(s)	216, 331, 728
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
SsiI	CCGC	8 cut(s)	98, 188, 235, 238, 464, 592, 785, 1218
SspMI	CTAG	6 cut(s)	89, 426, 471, 987, 1107, 1230
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	7 cut(s)	183, 682, 822, 832, 880, 1434, 1435
StyI	CCWWGG	3 cut(s)	166, 998, 1106
TaaI	ACNGT	4 cut(s)	344, 653, 775, 1147
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	2 cut(s)	870, 966
TauI	GCSGC	2 cut(s)	238, 466
TfiI	GAWTC	3 cut(s)	583, 829, 975
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	4 cut(s)	64, 812, 1021, 1078
TseI	GCWGC	6 cut(s)	198, 266, 269, 272, 320, 1286
Tsp45I	GTSAC	4 cut(s)	64, 812, 1021, 1078
TspDTI	ATGAA	4 cut(s)	19, 409, 967, 1319
TspGWI	ACGGA	1 cut(s)	1420
TspMI	CCCGGG	1 cut(s)	1435
TspRI	CASTG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	1005
VpaK11BI	GGWCC	2 cut(s)	208, 1170
XagI	CCTNNNNNAGG	1 cut(s)	1105
XbaI	TCTAGA	1 cut(s)	1229
XceI	RCATGY	1 cut(s)	1315
XhoI	CTCGAG	1 cut(s)	965
XmaI	CCCGGG	1 cut(s)	1435
XmaJI	CCTAGG	1 cut(s)	1106
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	6 cut(s)	89, 426, 471, 987, 1107, 1230
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.