FvH4_4g08971

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
10041416 .. 10043278
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08971.t1

Sequence Viewer

Length: 1863 bp
ATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGGTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTATGGGATTAGAAGATATTCCTGTAGTAAAAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTACCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCTAGCGGAATTGAAAGAGTTGAAGACTCAGTTGCAGGAGTTGATAAATAAGGGTTTTATTCGGCCTAGCATGTCTCCATTGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCAATGATTATAGAGAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGGTTATCATCAGTTGCAGATCCGAGAGGGGGACATAGCCAAGATTGTTTTTCGGTCACTATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGACCTCATGAATAGGGTGTTTAGTTCATACCTTGATCGTTTCGTGATCGTATTCATAGATGACATATTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTTTTGGGTTATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCATCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAGATTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAATGGGAGCAAAGTTTCCAAGAATTGAAGAATTGCTTAACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAGTATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGTTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATTTTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAAAGAAGATGGATAGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCACCCTGGAAAAGCTAATGTGGTAGCGGATGCTCTTAGTCGAAATCCGTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGTTACAGGAGTGGATTTATCAGTAGATGAGATTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGGAGAGATGGGACTCTACTGTTTAAGAATCGGCTATGTGTTGCAAAAAGAAATGAAGAGTTGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

621

Amino Acids

70.84

Weight (kDa)

8.78

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 153 - 313 3.2e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 376 - 470 4.3e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 402 - 500 1.4e-32 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccB1I GGYRCC 3 cut(s) 340, 473, 575
AccB7I CCANNNNNTGG 1 cut(s) 973
AccII CGCG 1 cut(s) 722
AccIII TCCGGA 2 cut(s) 244, 1198
AclWI GGATC 5 cut(s) 554, 622, 956, 969, 1721
AcyI GRCGYC 1 cut(s) 341
AfiI CCNNNNNNNGG 4 cut(s) 637, 973, 1110, 1316
AgsI TTSAA 9 cut(s) 44, 370, 379, 508, 1074, 1124, 1162, 1306, 1855
AjiI CACGTC 1 cut(s) 1244
AjnI CCWGG 3 cut(s) 268, 1103, 1522
AluBI AGCT 6 cut(s) 26, 179, 1345, 1456, 1532, 1757
AluI AGCT 6 cut(s) 26, 179, 1345, 1456, 1532, 1757
Alw21I GWGCWC 2 cut(s) 445, 1183
Alw26I GTCTC 4 cut(s) 435, 475, 1372, 1459
AlwI GGATC 5 cut(s) 554, 622, 956, 969, 1721
Aor13HI TCCGGA 2 cut(s) 244, 1198
AoxI GGCC 2 cut(s) 419, 1685
ApeKI GCWGC 5 cut(s) 137, 1082, 1267, 1349, 1772
Asp700I GAANNNNTTC 2 cut(s) 222, 312
AspLEI GCGC 2 cut(s) 343, 1056
AspS9I GGNCC 1 cut(s) 733
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 703, 1511
AsuII TTCGAA 2 cut(s) 61, 1760
AvaII GGWCC 1 cut(s) 733
AxyI CCTNAGG 1 cut(s) 258
BamHI GGATCC 1 cut(s) 961
BanI GGYRCC 3 cut(s) 340, 473, 575
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbsI GAAGAC 3 cut(s) 386, 1003, 1421
Bbv12I GWGCWC 2 cut(s) 445, 1183
BbvI GCAGC 5 cut(s) 124, 1069, 1279, 1361, 1784
BccI CCATC 7 cut(s) 65, 464, 1010, 1470, 1585, 1741, 1793
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 3 cut(s) 270, 1105, 1524
BciVI GTATCC 1 cut(s) 184
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 4 cut(s) 435, 475, 1372, 1459
BfaI CTAG 6 cut(s) 359, 423, 908, 1239, 1250, 1296
BfmI CTRYAG 2 cut(s) 228, 303
BfoI RGCGCY 2 cut(s) 344, 1057
BfuAI ACCTGC 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 8 cut(s) 138, 723, 1083, 1268, 1310, 1350, 1770, 1773
BlsI GCNGC 8 cut(s) 139, 724, 1084, 1269, 1311, 1351, 1771, 1774
Bme1390I CCNGG 4 cut(s) 270, 318, 1105, 1524
Bme18I GGWCC 1 cut(s) 733
BmgBI CACGTC 1 cut(s) 1244
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 6 cut(s) 342, 475, 577, 963, 1396, 1768
BmrFI CCNGG 4 cut(s) 270, 318, 1105, 1524
BmsI GCATC 5 cut(s) 684, 844, 1222, 1254, 1537
BpiI GAAGAC 3 cut(s) 386, 1003, 1421
BpmI CTGGAG 2 cut(s) 429, 1361
Bpu14I TTCGAA 2 cut(s) 61, 1760
BpuEI CTTGAG 2 cut(s) 793, 1352
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 4 cut(s) 91, 542, 720, 1522
BsaWI WCCGGW 2 cut(s) 244, 1198
BsaXI ACNNNNNCTCC 6 cut(s) 942, 972, 1165, 1195, 1203, 1233
Bsc4I CCNNNNNNNGG 4 cut(s) 637, 973, 1110, 1316
Bse1I ACTGG 3 cut(s) 446, 1671, 1688
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 496
BseAI TCCGGA 2 cut(s) 244, 1198
BseBI CCWGG 3 cut(s) 270, 1105, 1524
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 4 cut(s) 91, 542, 720, 1522
BseGI GGATG 3 cut(s) 253, 1207, 1552
BseLI CCNNNNNNNGG 4 cut(s) 637, 973, 1110, 1316
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 249, 350, 398
BseNI ACTGG 3 cut(s) 446, 1671, 1688
BseRI GAGGAG 2 cut(s) 275, 1077
BseXI GCAGC 5 cut(s) 124, 1069, 1279, 1361, 1784
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 2 cut(s) 421, 1687
BshNI GGYRCC 3 cut(s) 340, 473, 575
BshVI ATCGAT 1 cut(s) 549
BsiHKAI GWGCWC 2 cut(s) 445, 1183
BsiSI CCGG 3 cut(s) 245, 318, 1199
BslFI GGGAC 2 cut(s) 653, 1816
BslI CCNNNNNNNGG 4 cut(s) 637, 973, 1110, 1316
BsmAI GTCTC 4 cut(s) 435, 475, 1372, 1459
BsmFI GGGAC 2 cut(s) 653, 1816
BsnI GGCC 2 cut(s) 421, 1687
Bsp119I TTCGAA 2 cut(s) 61, 1760
Bsp1286I GDGCHC 2 cut(s) 445, 1183
Bsp13I TCCGGA 2 cut(s) 244, 1198
BspANI GGCC 2 cut(s) 421, 1687
BspCNI CTCAG 3 cut(s) 250, 349, 397
BspDI ATCGAT 1 cut(s) 549
BspEI TCCGGA 2 cut(s) 244, 1198
BspFNI CGCG 1 cut(s) 722
BspHI TCATGA 2 cut(s) 738, 1333
BspLI GGNNCC 6 cut(s) 342, 475, 577, 963, 1396, 1768
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 5 cut(s) 554, 622, 956, 969, 1721
BspT104I TTCGAA 2 cut(s) 61, 1760
BspT107I GGYRCC 3 cut(s) 340, 473, 575
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 3 cut(s) 446, 1671, 1688
BssECI CCNNGG 4 cut(s) 91, 542, 720, 1522
BssNI GRCGYC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 270, 1105, 1524
Bst4CI ACNGT 4 cut(s) 520, 1009, 1719, 1812
Bst6I CTCTTC 2 cut(s) 1842, 1850
BstACI GRCGYC 1 cut(s) 341
BstBI TTCGAA 2 cut(s) 61, 1760
BstC8I GCNNGC 2 cut(s) 828, 1347
BstDEI CTNAG 7 cut(s) 258, 336, 384, 591, 839, 882, 1553
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 3 cut(s) 253, 1207, 1552
BstFNI CGCG 1 cut(s) 722
BstH2I RGCGCY 2 cut(s) 344, 1057
BstHHI GCGC 2 cut(s) 343, 1056
BstMAI GTCTC 4 cut(s) 435, 475, 1372, 1459
BstMWI GCNNNNNNNGC 7 cut(s) 23, 137, 176, 722, 832, 1306, 1667
BstNI CCWGG 3 cut(s) 270, 1105, 1524
BstNSI RCATGY 2 cut(s) 430, 830
BstSCI CCNGG 4 cut(s) 268, 316, 1103, 1522
BstSFI CTRYAG 2 cut(s) 228, 303
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 5 cut(s) 124, 1069, 1279, 1361, 1784
BstV2I GAAGAC 3 cut(s) 386, 1003, 1421
BstX2I RGATCY 2 cut(s) 627, 961
BstYI RGATCY 2 cut(s) 627, 961
Bsu15I ATCGAT 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 258
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 421, 1687
BsuTUI ATCGAT 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 720
BtrI CACGTC 1 cut(s) 1244
BtsCI GGATG 3 cut(s) 253, 1207, 1552
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 5 cut(s) 453, 525, 987, 1005, 1498
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 2 cut(s) 828, 1347
CciI TCATGA 2 cut(s) 738, 1333
CfoI GCGC 2 cut(s) 343, 1056
Cfr13I GGNCC 1 cut(s) 733
Cfr42I CCGCGG 1 cut(s) 723
ClaI ATCGAT 1 cut(s) 549
DdeI CTNAG 7 cut(s) 258, 336, 384, 591, 839, 882, 1553
DinI GGCGCC 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 1842, 1850
EarI CTCTTC 2 cut(s) 1842, 1850
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 733
Eco81I CCTNAGG 1 cut(s) 258
EcoRII CCWGG 3 cut(s) 268, 1103, 1522
EcoT14I CCWWGG 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 342
EheI GGCGCC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 91
FalI AAGNNNNNCTT 2 cut(s) 1154, 1186
FaqI GGGAC 2 cut(s) 653, 1816
FauI CCCGC 2 cut(s) 727, 1701
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 8 cut(s) 138, 723, 1083, 1268, 1310, 1350, 1770, 1773
FokI GGATG 3 cut(s) 260, 1214, 1559
Fsp4HI GCNGC 8 cut(s) 138, 723, 1083, 1268, 1310, 1350, 1770, 1773
FspBI CTAG 6 cut(s) 359, 423, 908, 1239, 1250, 1296
GlaI GCGC 2 cut(s) 342, 1055
GluI GCNGC 8 cut(s) 138, 723, 1083, 1268, 1310, 1350, 1770, 1773
GsuI CTGGAG 2 cut(s) 429, 1361
HaeII RGCGCY 2 cut(s) 344, 1057
HaeIII GGCC 2 cut(s) 421, 1687
HapII CCGG 3 cut(s) 245, 318, 1199
HhaI GCGC 2 cut(s) 343, 1056
Hin1I GRCGYC 1 cut(s) 341
Hin6I GCGC 2 cut(s) 341, 1054
HinP1I GCGC 2 cut(s) 341, 1054
HinfI GANTC 6 cut(s) 382, 508, 1018, 1426, 1804, 1819
HpaII CCGG 3 cut(s) 245, 318, 1199
HphI GGTGA 2 cut(s) 703, 1511
Hpy166II GTNNAC 3 cut(s) 275, 805, 1443
Hpy188I TCNGA 4 cut(s) 546, 632, 1132, 1407
Hpy8I GTNNAC 3 cut(s) 275, 805, 1443
HpyAV CCTTC 4 cut(s) 814, 941, 1102, 1740
HpyCH4III ACNGT 4 cut(s) 520, 1009, 1719, 1812
HpyCH4IV ACGT 2 cut(s) 1243, 1290
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 137, 176, 722, 832, 1306, 1667
HpyF3I CTNAG 7 cut(s) 258, 336, 384, 591, 839, 882, 1553
HpySE526I ACGT 2 cut(s) 1243, 1290
Hsp92I GRCGYC 1 cut(s) 341
HspAI GCGC 2 cut(s) 341, 1054
KasI GGCGCC 1 cut(s) 340
Kpn2I TCCGGA 2 cut(s) 244, 1198
Ksp22I TGATCA 1 cut(s) 562
KspI CCGCGG 1 cut(s) 723
LmnI GCTCC 8 cut(s) 448, 823, 1090, 1141, 1186, 1342, 1394, 1766
Lsp1109I GCAGC 5 cut(s) 124, 1069, 1279, 1361, 1784
LweI GCATC 5 cut(s) 684, 844, 1222, 1254, 1537
MaeI CTAG 6 cut(s) 359, 423, 908, 1239, 1250, 1296
MaeII ACGT 2 cut(s) 1243, 1290
MaeIII GTNAC 4 cut(s) 514, 663, 1009, 1624
MboII GAAGA 9 cut(s) 230, 391, 475, 535, 1008, 1174, 1421, 1485, 1859
MfeI CAATTG 1 cut(s) 1301
MflI RGATCY 2 cut(s) 627, 961
MhlI GDGCHC 2 cut(s) 445, 1183
MluCI AATT 9 cut(s) 123, 146, 308, 365, 988, 1157, 1165, 1301, 1321
Mly113I GGCGCC 1 cut(s) 341
MlyI GAGTC 3 cut(s) 376, 1435, 1798
MroI TCCGGA 2 cut(s) 244, 1198
MroXI GAANNNNTTC 2 cut(s) 222, 312
MseI TTAA 6 cut(s) 459, 1116, 1172, 1458, 1487, 1815
MslI CAYNNNNRTG 1 cut(s) 1007
MspA1I CMGCKG 3 cut(s) 131, 722, 1352
MspI CCGG 3 cut(s) 245, 318, 1199
MspR9I CCNGG 4 cut(s) 270, 318, 1105, 1524
MunI CAATTG 1 cut(s) 1301
MvaI CCWGG 3 cut(s) 270, 1105, 1524
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 7 cut(s) 23, 137, 176, 722, 832, 1306, 1667
NarI GGCGCC 1 cut(s) 341
NciI CCSGG 1 cut(s) 318
NlaIV GGNNCC 6 cut(s) 342, 475, 577, 963, 1396, 1768
NmuCI GTSAC 3 cut(s) 514, 663, 1009
NspI RCATGY 2 cut(s) 430, 830
NspV TTCGAA 2 cut(s) 61, 1760
PaeI GCATGC 1 cut(s) 830
PagI TCATGA 2 cut(s) 738, 1333
PdmI GAANNNNTTC 2 cut(s) 222, 312
PfeI GAWTC 3 cut(s) 508, 1018, 1819
PflFI GACNNNGTC 1 cut(s) 1245
PflMI CCANNNNNTGG 1 cut(s) 973
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 8 cut(s) 139, 724, 1084, 1269, 1311, 1351, 1771, 1774
PleI GAGTC 3 cut(s) 376, 1434, 1798
PluTI GGCGCC 1 cut(s) 344
PpsI GAGTC 3 cut(s) 376, 1434, 1798
Psp6I CCWGG 3 cut(s) 268, 1103, 1522
PspGI CCWGG 3 cut(s) 268, 1103, 1522
PspN4I GGNNCC 6 cut(s) 342, 475, 577, 963, 1396, 1768
PspPI GGNCC 1 cut(s) 733
PsuI RGATCY 2 cut(s) 627, 961
PsyI GACNNNGTC 1 cut(s) 1245
RseI CAYNNNNRTG 1 cut(s) 1007
SacII CCGCGG 1 cut(s) 723
SaqAI TTAA 6 cut(s) 459, 1116, 1172, 1458, 1487, 1815
SatI GCNGC 8 cut(s) 138, 723, 1083, 1268, 1310, 1350, 1770, 1773
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 3 cut(s) 376, 1435, 1798
ScrFI CCNGG 4 cut(s) 270, 318, 1105, 1524
SduI GDGCHC 2 cut(s) 445, 1183
SfaNI GCATC 5 cut(s) 684, 844, 1222, 1254, 1537
SfcI CTRYAG 2 cut(s) 228, 303
SfoI GGCGCC 1 cut(s) 342
Sfr303I CCGCGG 1 cut(s) 723
SfuI TTCGAA 2 cut(s) 61, 1760
SgrBI CCGCGG 1 cut(s) 723
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 1007
SmlI CTYRAG 2 cut(s) 808, 1367
SmoI CTYRAG 2 cut(s) 808, 1367
SphI GCATGC 1 cut(s) 830
Sse9I AATT 9 cut(s) 123, 146, 308, 365, 988, 1157, 1165, 1301, 1321
SspDI GGCGCC 1 cut(s) 340
SspI AATATT 1 cut(s) 849
SspMI CTAG 6 cut(s) 359, 423, 908, 1239, 1250, 1296
StyD4I CCNGG 4 cut(s) 268, 316, 1103, 1522
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 4 cut(s) 520, 1009, 1719, 1812
TaiI ACGT 2 cut(s) 1246, 1293
TaqI TCGA 7 cut(s) 61, 549, 986, 1276, 1558, 1741, 1760
TaqII GACCGA 1 cut(s) 651
TasI AATT 9 cut(s) 123, 146, 308, 365, 988, 1157, 1165, 1301, 1321
TauI GCSGC 3 cut(s) 725, 1312, 1772
TfiI GAWTC 3 cut(s) 508, 1018, 1819
Tru1I TTAA 6 cut(s) 459, 1116, 1172, 1458, 1487, 1815
Tru9I TTAA 6 cut(s) 459, 1116, 1172, 1458, 1487, 1815
TscAI CASTG 5 cut(s) 453, 525, 987, 1012, 1498
TseFI GTSAC 3 cut(s) 514, 663, 1009
TseI GCWGC 5 cut(s) 137, 1082, 1267, 1349, 1772
Tsp45I GTSAC 3 cut(s) 514, 663, 1009
TspDTI ATGAA 6 cut(s) 718, 747, 755, 775, 1667, 1860
TspGWI ACGGA 3 cut(s) 525, 1028, 1554
TspRI CASTG 5 cut(s) 453, 525, 987, 1012, 1498
Tth111I GACNNNGTC 1 cut(s) 1245
Van91I CCANNNNNTGG 1 cut(s) 973
VpaK11BI GGWCC 1 cut(s) 733
XbaI TCTAGA 1 cut(s) 1238
XceI RCATGY 2 cut(s) 430, 830
XmnI GAANNNNTTC 2 cut(s) 222, 312
XspI CTAG 6 cut(s) 359, 423, 908, 1239, 1250, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.