FvH4_4g15584
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
19333273 .. 19333965
693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15584.t1

Sequence Viewer

Length: 597 bp
ATGGGTACTACCTTAGACATGAGCACAGCATTTCACCCTCAGACTGATGGGCAGACTGAGCGGGTGAATCAGGTGTTAGAAGATATGCTGAGGGCTTGTGTCATGGACTTCAAGGGAAGTTGGGAGGATCACCTCCAATTGATTGAGTTTGCCTACAATAATAGCTATTACTCTAGTATCGGCATGGCACCATATGAGGCACTCTATGGGAGGCCATGTAGGATCCGAACGGCACAAAGTAGGCAAAAGAGCTATGCCGACTTGAAGAGGAGGCAAGTAGAGTTTGAGGTTGGGGATCATGTGTTCTTGAAGGTCTCACCTACTAAAGGGGTGGTGAGATTTGGCAAGAAGGGGAAGTTGGCTCCTAGGTATGTGGGGCCTTTTGAGATTTTGGAGAAAGTAGGAGATTTGGCTTATCGGCTTGCCTTACCTCCTATCATGTCCGGGGTACACAATGTGTTTCATGTGTCCTTGTTGAGGAAGTATATTCCGGATGCATCACACGTGATTGACTATAGTTCTATCAAAGTGAATGCGGATGCAACCTTTGTTGTTGAACTGGTTCGAATCTTAGATAGATCAACCAAGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

199

Amino Acids

22.55

Weight (kDa)

9.16

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 98 - 162 1.3e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 2 cut(s) 61, 536
AclWI GGATC 4 cut(s) 135, 217, 230, 303
AcvI CACGTG 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 2 cut(s) 7, 450
AfiI CCNNNNNNNGG 2 cut(s) 326, 477
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 4 cut(s) 112, 265, 310, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 2 cut(s) 165, 252
AluI AGCT 2 cut(s) 165, 252
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 4 cut(s) 135, 217, 230, 303
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 2 cut(s) 212, 377
Asp700I GAANNNNTTC 1 cut(s) 561
AspA2I CCTAGG 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 5 cut(s) 26, 76, 122, 309, 346
AsuII TTCGAA 1 cut(s) 565
AvrII CCTAGG 1 cut(s) 365
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BamHI GGATCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 187
BbrPI CACGTG 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 246
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 2 cut(s) 174, 366
BfmI CTRYAG 1 cut(s) 514
BlnI CCTAGG 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 4 cut(s) 189, 224, 363, 378
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 3 cut(s) 484, 506, 529
Bpu10I CCTNAGC 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 445
BsaAI YACGTR 1 cut(s) 505
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 365, 444
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 477
Bse1I ACTGG 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 365, 444
BseGI GGATG 2 cut(s) 499, 544
BseLI CCNNNNNNNGG 2 cut(s) 326, 477
BseMII CTCAG 3 cut(s) 48, 53, 80
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 283
BshFI GGCC 2 cut(s) 214, 379
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 444, 491
BslI CCNNNNNNNGG 2 cut(s) 326, 477
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 2 cut(s) 214, 379
Bso31I GGTCTC 1 cut(s) 319
Bsp119I TTCGAA 1 cut(s) 565
Bsp1286I GDGCHC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 4 cut(s) 127, 222, 295, 578
BspACI CCGC 2 cut(s) 61, 536
BspANI GGCC 2 cut(s) 214, 379
BspCNI CTCAG 3 cut(s) 49, 52, 81
BspEI TCCGGA 1 cut(s) 490
BspLI GGNNCC 4 cut(s) 189, 224, 363, 378
BspPI GGATC 4 cut(s) 135, 217, 230, 303
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 365, 444
BssMI GATC 4 cut(s) 127, 222, 295, 578
BssT1I CCWWGG 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 5 cut(s) 13, 39, 57, 89, 571
BstENI CCTNNNNNAGG 2 cut(s) 324, 475
BstF5I GGATG 2 cut(s) 499, 544
BstKTI GATC 4 cut(s) 130, 225, 298, 581
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 4 cut(s) 127, 222, 295, 578
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 514
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
BsuRI GGCC 2 cut(s) 214, 379
BtsCI GGATG 2 cut(s) 499, 544
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 6, 449
CviAII CATG 7 cut(s) 19, 103, 184, 216, 299, 439, 464
CviJI RGCY 9 cut(s) 95, 165, 214, 252, 362, 379, 413, 421, 592
CviKI_1 RGCY 9 cut(s) 95, 165, 214, 252, 362, 379, 413, 421, 592
CviQI GTAC 2 cut(s) 6, 449
DdeI CTNAG 5 cut(s) 13, 39, 57, 89, 571
DpnI GATC 4 cut(s) 129, 224, 297, 580
DpnII GATC 4 cut(s) 127, 222, 295, 578
DraIII CACNNNGTG 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 319
Eco72I CACGTG 1 cut(s) 505
EcoNI CCTNNNNNAGG 2 cut(s) 324, 475
EcoO109I RGGNCCY 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 7 cut(s) 22, 106, 187, 219, 302, 442, 467
FatI CATG 7 cut(s) 18, 102, 183, 215, 298, 438, 463
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 193
FokI GGATG 2 cut(s) 506, 551
FspBI CTAG 2 cut(s) 174, 366
HaeIII GGCC 2 cut(s) 214, 379
HapII CCGG 2 cut(s) 444, 491
Hin1II CATG 7 cut(s) 22, 106, 187, 219, 302, 442, 467
HinfI GANTC 2 cut(s) 67, 567
HpaII CCGG 2 cut(s) 444, 491
HphI GGTGA 5 cut(s) 26, 76, 122, 309, 346
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 42, 227
Hpy188III TCNNGA 2 cut(s) 307, 491
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 304, 343
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 2 cut(s) 497, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 5 cut(s) 13, 39, 57, 89, 571
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 7 cut(s) 22, 106, 187, 219, 302, 442, 467
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 4 cut(s) 127, 222, 295, 578
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 56, 457, 504, 545
LweI GCATC 3 cut(s) 484, 506, 529
MaeI CTAG 2 cut(s) 174, 366
MaeII ACGT 1 cut(s) 504
MalI GATC 4 cut(s) 129, 224, 297, 580
MbiI CCGCTC 1 cut(s) 61
MboI GATC 4 cut(s) 127, 222, 295, 578
MboII GAAGA 2 cut(s) 92, 277
MfeI CAATTG 1 cut(s) 137
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 490
MroXI GAANNNNTTC 1 cut(s) 561
MspI CCGG 2 cut(s) 444, 491
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 445
NdeI CATATG 1 cut(s) 193
NdeII GATC 4 cut(s) 127, 222, 295, 578
NlaIII CATG 7 cut(s) 22, 106, 187, 219, 302, 442, 467
NlaIV GGNNCC 4 cut(s) 189, 224, 363, 378
NsiI ATGCAT 1 cut(s) 499
NspV TTCGAA 1 cut(s) 565
PctI GAATGC 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 67, 567
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
Ppu21I YACGTR 1 cut(s) 505
PspCI CACGTG 1 cut(s) 505
PspN4I GGNNCC 4 cut(s) 189, 224, 363, 378
PspPI GGNCC 1 cut(s) 377
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 2 cut(s) 7, 450
RsaNI GTAC 2 cut(s) 6, 449
Sau3AI GATC 4 cut(s) 127, 222, 295, 578
Sau96I GGNCC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 3 cut(s) 484, 506, 529
SfcI CTRYAG 1 cut(s) 514
SfuI TTCGAA 1 cut(s) 565
Sse9I AATT 1 cut(s) 137
SsiI CCGC 2 cut(s) 61, 536
SspMI CTAG 2 cut(s) 174, 366
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 365
TaiI ACGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 565
TasI AATT 1 cut(s) 137
TfiI GAWTC 2 cut(s) 67, 567
TspDTI ATGAA 1 cut(s) 452
XagI CCTNNNNNAGG 2 cut(s) 324, 475
XmaJI CCTAGG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 2 cut(s) 174, 366
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.