FvH4_4g14432

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
18100702 .. 18101742
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14432.t1

Sequence Viewer

Length: 1041 bp
ATGGATTTTGTTTTTAGTTTACCTCGTACCCGTGAAGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGACGGAGCTTTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTTTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGTACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGCTCAGAGGTAGTTGGGATAAAAACCTATTTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGTACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATTCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTTAAGACTGCTCAAAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCCCCTTGGAAAGGGGTTGTGCGCTTCGGGAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCGTATGAGATAATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCTAGAGTTAGCTAGGATACATAATGTGTTTTATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATTAGTTTGACGAGAGACTTGTCCTATGAAGAGGAATCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGAAACAAGACAATCCCGCTTGTCAAGGTGCTTTGGAGGAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCCTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

347

Amino Acids

40.32

Weight (kDa)

8.86

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 209 - 273 5.8e-26 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 242, 424
AciI CCGC 1 cut(s) 944
AclWI GGATC 3 cut(s) 188, 201, 821
AcsI RAATTY 3 cut(s) 212, 383, 614
AcuI CTGAAG 2 cut(s) 212, 241
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 4 cut(s) 28, 244, 262, 460
AfiI CCNNNNNNNGG 2 cut(s) 36, 659
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 2 cut(s) 614, 620
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 9 cut(s) 133, 224, 236, 346, 402, 496, 691, 776, 986
AluI AGCT 9 cut(s) 133, 224, 236, 346, 402, 496, 691, 776, 986
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 3 cut(s) 188, 201, 821
Ama87I CYCGRG 1 cut(s) 697
AoxI GGCC 2 cut(s) 502, 709
ApeKI GCWGC 5 cut(s) 233, 343, 841, 850, 1015
ApoI RAATTY 3 cut(s) 212, 383, 614
Asp700I GAANNNNTTC 1 cut(s) 894
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 427, 672
AspS9I GGNCC 2 cut(s) 503, 710
AsuHPI GGTGA 3 cut(s) 64, 67, 638
AvaI CYCGRG 1 cut(s) 697
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 2 cut(s) 242, 424
BanII GRGCYC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 792, 824
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 5 cut(s) 245, 355, 828, 862, 1027
BccI CCATC 2 cut(s) 278, 373
BciVI GTATCC 3 cut(s) 774, 811, 1032
BcoDI GTCTC 1 cut(s) 864
BfaI CTAG 3 cut(s) 411, 767, 777
BfoI RGCGCY 1 cut(s) 428
BfrI CTTAAG 1 cut(s) 557
BfuI GTATCC 3 cut(s) 774, 811, 1032
BglII AGATCT 1 cut(s) 607
BisI GCNGC 5 cut(s) 234, 344, 842, 851, 1016
BlpI GCTNAGC 1 cut(s) 692
BlsI GCNGC 5 cut(s) 235, 345, 843, 852, 1017
BmcAI AGTACT 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 697
BmgT120I GGNCC 2 cut(s) 503, 710
BmiI GGNNCC 3 cut(s) 195, 244, 426
BmsI GCATC 1 cut(s) 1002
Bpu1102I GCTNAGC 1 cut(s) 692
Bsa29I ATCGAT 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 653, 698
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 439, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 659
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 751
BseDI CCNNGG 2 cut(s) 653, 698
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 36, 659
BseMII CTCAG 2 cut(s) 290, 361
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 979, 1016
BseXI GCAGC 5 cut(s) 245, 355, 828, 862, 1027
BsgI GTGCAG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 910
BshFI GGCC 2 cut(s) 504, 711
BshNI GGYRCC 2 cut(s) 242, 424
BshVI ATCGAT 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 910
BsiHKAI GWGCWC 1 cut(s) 226
BsiHKCI CYCGRG 1 cut(s) 697
BsiWI CGTACG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 36, 659
BsmAI GTCTC 1 cut(s) 864
BsnI GGCC 2 cut(s) 504, 711
BsoBI CYCGRG 1 cut(s) 697
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 187, 193, 607, 826
Bsp1720I GCTNAGC 1 cut(s) 692
BspACI CCGC 1 cut(s) 944
BspANI GGCC 2 cut(s) 504, 711
BspCNI CTCAG 2 cut(s) 289, 360
BspDI ATCGAT 1 cut(s) 751
BspLI GGNNCC 3 cut(s) 195, 244, 426
BspPI GGATC 3 cut(s) 188, 201, 821
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 2 cut(s) 242, 424
BspTI CTTAAG 1 cut(s) 557
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 653, 698
BssMI GATC 4 cut(s) 187, 193, 607, 826
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 653
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 5 cut(s) 231, 260, 575, 879, 1037
BstACI GRCGYC 1 cut(s) 425
BstAFI CTTAAG 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 1012
BstDEI CTNAG 4 cut(s) 276, 347, 692, 926
BstENI CCTNNNNNAGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 2 cut(s) 427, 672
BstKTI GATC 4 cut(s) 190, 196, 610, 829
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 4 cut(s) 187, 193, 607, 826
BstMCI CGRYCG 1 cut(s) 910
BstMWI GCNNNNNNNGC 5 cut(s) 230, 688, 847, 850, 1012
BstV1I GCAGC 5 cut(s) 245, 355, 828, 862, 1027
BstX2I RGATCY 2 cut(s) 193, 607
BstYI RGATCY 2 cut(s) 193, 607
Bsu15I ATCGAT 1 cut(s) 751
BsuI GTATCC 3 cut(s) 774, 811, 1032
BsuRI GGCC 2 cut(s) 504, 711
BsuTUI ATCGAT 1 cut(s) 751
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 2 cut(s) 102, 458
CfoI GCGC 2 cut(s) 427, 672
Cfr13I GGNCC 2 cut(s) 503, 710
ClaI ATCGAT 1 cut(s) 751
Csp6I GTAC 4 cut(s) 27, 243, 261, 459
CviAII CATG 6 cut(s) 41, 161, 340, 518, 805, 836
CviQI GTAC 4 cut(s) 27, 243, 261, 459
DdeI CTNAG 4 cut(s) 276, 347, 692, 926
DinI GGCGCC 1 cut(s) 426
DpnI GATC 4 cut(s) 189, 195, 609, 828
DpnII GATC 4 cut(s) 187, 193, 607, 826
Eam1104I CTCTTC 5 cut(s) 231, 260, 575, 879, 1037
EarI CTCTTC 5 cut(s) 231, 260, 575, 879, 1037
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 653
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 212, 241
Eco88I CYCGRG 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 224
EcoNI CCTNNNNNAGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 426
EheI GGCGCC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 6 cut(s) 44, 164, 343, 521, 808, 839
FatI CATG 6 cut(s) 40, 160, 339, 517, 804, 835
FauI CCCGC 1 cut(s) 951
Fnu4HI GCNGC 5 cut(s) 234, 344, 842, 851, 1016
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 5 cut(s) 234, 344, 842, 851, 1016
FspBI CTAG 3 cut(s) 411, 767, 777
GlaI GCGC 2 cut(s) 426, 671
GluI GCNGC 5 cut(s) 234, 344, 842, 851, 1016
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 2 cut(s) 504, 711
HhaI GCGC 2 cut(s) 427, 672
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 6 cut(s) 44, 164, 343, 521, 808, 839
Hin6I GCGC 2 cut(s) 425, 670
HinP1I GCGC 2 cut(s) 425, 670
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 6 cut(s) 69, 173, 890, 901, 967, 995
HphI GGTGA 3 cut(s) 64, 67, 638
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 8 cut(s) 187, 279, 295, 309, 350, 900, 1000, 1037
Hpy188III TCNNGA 7 cut(s) 170, 191, 611, 640, 676, 767, 905
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 29, 840
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 83, 343, 590, 844, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 688, 847, 850, 1012
HpyF3I CTNAG 4 cut(s) 276, 347, 692, 926
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 6 cut(s) 44, 164, 343, 521, 808, 839
HspAI GCGC 2 cut(s) 425, 670
KasI GGCGCC 1 cut(s) 424
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 4 cut(s) 187, 193, 607, 826
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 4 cut(s) 130, 221, 916, 1003
LpnPI CCDG 5 cut(s) 108, 183, 215, 519, 653
Lsp1109I GCAGC 5 cut(s) 245, 355, 828, 862, 1027
LweI GCATC 1 cut(s) 1002
MaeI CTAG 3 cut(s) 411, 767, 777
MaeIII GTNAC 1 cut(s) 520
MalI GATC 4 cut(s) 189, 195, 609, 828
MboI GATC 4 cut(s) 187, 193, 607, 826
MboII GAAGA 7 cut(s) 218, 247, 544, 592, 896, 992, 1024
MflI RGATCY 2 cut(s) 193, 607
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 9 cut(s) 113, 122, 147, 212, 248, 383, 513, 614, 644
Mly113I GGCGCC 1 cut(s) 425
MlyI GAGTC 2 cut(s) 63, 976
MmeI TCCRAC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 894
MseI TTAA 3 cut(s) 512, 537, 558
MslI CAYNNNNRTG 1 cut(s) 419
MspCI CTTAAG 1 cut(s) 557
MwoI GCNNNNNNNGC 5 cut(s) 230, 688, 847, 850, 1012
NarI GGCGCC 1 cut(s) 425
NdeII GATC 4 cut(s) 187, 193, 607, 826
NlaIII CATG 6 cut(s) 44, 164, 343, 521, 808, 839
NlaIV GGNNCC 3 cut(s) 195, 244, 426
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 894
PfeI GAWTC 4 cut(s) 173, 890, 901, 995
Pfl23II CGTACG 1 cut(s) 458
PkrI GCNGC 5 cut(s) 235, 345, 843, 852, 1017
PleI GAGTC 2 cut(s) 63, 975
PluTI GGCGCC 1 cut(s) 428
PpsI GAGTC 2 cut(s) 63, 975
Psp124BI GAGCTC 1 cut(s) 226
PspLI CGTACG 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 195, 244, 426
PspPI GGNCC 2 cut(s) 503, 710
PsuI RGATCY 2 cut(s) 193, 607
RsaI GTAC 4 cut(s) 28, 244, 262, 460
RsaNI GTAC 4 cut(s) 27, 243, 261, 459
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 512, 537, 558
SatI GCNGC 5 cut(s) 234, 344, 842, 851, 1016
Sau3AI GATC 4 cut(s) 187, 193, 607, 826
Sau96I GGNCC 2 cut(s) 503, 710
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 2 cut(s) 63, 976
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 1 cut(s) 1002
SfoI GGCGCC 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 9 cut(s) 113, 122, 147, 212, 248, 383, 513, 614, 644
SsiI CCGC 1 cut(s) 944
SspDI GGCGCC 1 cut(s) 424
SspMI CTAG 3 cut(s) 411, 767, 777
SstI GAGCTC 1 cut(s) 226
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 199, 751, 906
TaqII GACCGA 1 cut(s) 924
TasI AATT 9 cut(s) 113, 122, 147, 212, 248, 383, 513, 614, 644
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 4 cut(s) 173, 890, 901, 995
Tru1I TTAA 3 cut(s) 512, 537, 558
Tru9I TTAA 3 cut(s) 512, 537, 558
TscAI CASTG 2 cut(s) 102, 458
TseI GCWGC 5 cut(s) 233, 343, 841, 850, 1015
TspDTI ATGAA 6 cut(s) 149, 159, 260, 492, 506, 897
TspGWI ACGGA 2 cut(s) 143, 587
TspRI CASTG 2 cut(s) 102, 458
Vha464I CTTAAG 1 cut(s) 557
XagI CCTNNNNNAGG 1 cut(s) 657
XapI RAATTY 3 cut(s) 212, 383, 614
XbaI TCTAGA 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 894
XspI CTAG 3 cut(s) 411, 767, 777
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.