FvH4_5g24682

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Forward (+)
16048368 .. 16051153
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24682.t1

Sequence Viewer

Length: 1803 bp
ATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCGTGTGTCTCTACCCTCCGGTGAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGAATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCCTCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTCCGATCACGTTATGGTCATTATGAATTTGAGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGACATTTTGGTTTACTCAAGAAGTAAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTCTTGGGTCATGTGATCTCGGCAGAGGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAACGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGATTATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGTCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

601

Amino Acids

68.05

Weight (kDa)

7.68

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 2 - 83 4.9e-14 Retroviral aspartyl protease
RVT_1 PF00078 169 - 329 8.3e-37 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 392 - 475 1.9e-26 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 419 - 477 3.5e-14 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1079
AccB1I GGYRCC 3 cut(s) 388, 521, 623
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccII CGCG 2 cut(s) 9, 770
AccIII TCCGGA 2 cut(s) 292, 1246
AciI CCGC 7 cut(s) 410, 673, 768, 770, 901, 1400, 1691
AclI AACGTT 1 cut(s) 1145
AclWI GGATC 7 cut(s) 104, 602, 670, 683, 789, 1004, 1017
AcsI RAATTY 2 cut(s) 731, 1774
AcuI CTGAAG 1 cut(s) 1774
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 3 cut(s) 46, 70, 1591
AfiI CCNNNNNNNGG 5 cut(s) 37, 333, 1021, 1158, 1599
AgsI TTSAA 7 cut(s) 418, 427, 1122, 1172, 1202, 1210, 1354
AjiI CACGTC 1 cut(s) 1292
AjnI CCWGG 2 cut(s) 181, 316
AjuI GAANNNNNNNTTGG 4 cut(s) 689, 721, 1661, 1693
AleI CACNNNNGTG 1 cut(s) 1055
AluBI AGCT 7 cut(s) 227, 553, 1393, 1581, 1696, 1786, 1798
AluI AGCT 7 cut(s) 227, 553, 1393, 1581, 1696, 1786, 1798
Alw21I GWGCWC 4 cut(s) 493, 1231, 1698, 1788
Alw26I GTCTC 5 cut(s) 180, 204, 483, 523, 1421
AlwI GGATC 7 cut(s) 104, 602, 670, 683, 789, 1004, 1017
Aor13HI TCCGGA 2 cut(s) 292, 1246
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 3 cut(s) 1315, 1397, 1795
ApoI RAATTY 2 cut(s) 731, 1774
Asp700I GAANNNNTTC 2 cut(s) 270, 360
AspLEI GCGC 3 cut(s) 11, 391, 1104
AspS9I GGNCC 2 cut(s) 1552, 1756
AsuC2I CCSGG 2 cut(s) 114, 366
AsuHPI GGTGA 6 cut(s) 224, 698, 751, 1552, 1627, 1630
AvaII GGWCC 2 cut(s) 1552, 1756
AxyI CCTNAGG 1 cut(s) 306
BamHI GGATCC 2 cut(s) 675, 1009
BanI GGYRCC 3 cut(s) 388, 521, 623
BanII GRGCYC 2 cut(s) 1698, 1788
BbsI GAAGAC 3 cut(s) 434, 1051, 1470
Bbv12I GWGCWC 4 cut(s) 493, 1231, 1698, 1788
BbvI GCAGC 2 cut(s) 1327, 1409
BccI CCATC 3 cut(s) 175, 512, 1592
BceAI ACGGC 1 cut(s) 1510
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 1304, 1338
BciT130I CCWGG 2 cut(s) 183, 318
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 2 cut(s) 114, 366
BcoDI GTCTC 5 cut(s) 180, 204, 483, 523, 1421
BfaI CTAG 8 cut(s) 12, 138, 224, 471, 956, 1287, 1298, 1344
BfmI CTRYAG 2 cut(s) 276, 351
BfoI RGCGCY 2 cut(s) 392, 1105
BfuAI ACCTGC 1 cut(s) 1079
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 4 cut(s) 771, 1316, 1398, 1796
BlsI GCNGC 4 cut(s) 772, 1317, 1399, 1797
Bme1390I CCNGG 4 cut(s) 114, 183, 318, 366
Bme18I GGWCC 2 cut(s) 1552, 1756
BmgBI CACGTC 1 cut(s) 1292
BmgT120I GGNCC 2 cut(s) 1552, 1756
BmrFI CCNGG 4 cut(s) 114, 183, 318, 366
BmsI GCATC 4 cut(s) 732, 892, 1270, 1302
BpiI GAAGAC 3 cut(s) 434, 1051, 1470
BpmI CTGGAG 3 cut(s) 36, 390, 1409
BpuEI CTTGAG 3 cut(s) 841, 1401, 1541
BpuMI CCSGG 2 cut(s) 114, 366
Bsa29I ATCGAT 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 482, 590, 768, 1563
BsaWI WCCGGW 4 cut(s) 209, 292, 493, 1246
BsaXI ACNNNNNCTCC 6 cut(s) 990, 1020, 1213, 1243, 1251, 1281
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 333, 1021, 1158, 1599
Bse1I ACTGG 2 cut(s) 1538, 1658
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 292, 1246
BseBI CCWGG 2 cut(s) 183, 318
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 4 cut(s) 482, 590, 768, 1563
BseGI GGATG 3 cut(s) 167, 301, 1255
BseLI CCNNNNNNNGG 5 cut(s) 37, 333, 1021, 1158, 1599
BseMII CTCAG 2 cut(s) 297, 398
BseNI ACTGG 2 cut(s) 1538, 1658
BseRI GAGGAG 2 cut(s) 323, 1125
BseXI GCAGC 2 cut(s) 1327, 1409
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 1629
Bsh1236I CGCG 2 cut(s) 9, 770
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 3 cut(s) 388, 521, 623
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 4 cut(s) 493, 1231, 1698, 1788
BsiSI CCGG 6 cut(s) 114, 210, 293, 366, 494, 1247
BslFI GGGAC 2 cut(s) 1565, 1769
BslI CCNNNNNNNGG 5 cut(s) 37, 333, 1021, 1158, 1599
BsmAI GTCTC 5 cut(s) 180, 204, 483, 523, 1421
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 1565, 1769
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 4 cut(s) 493, 1231, 1698, 1788
Bsp13I TCCGGA 2 cut(s) 292, 1246
Bsp19I CCATGG 2 cut(s) 482, 1563
BspACI CCGC 7 cut(s) 410, 673, 768, 770, 901, 1400, 1691
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 2 cut(s) 298, 397
BspDI ATCGAT 1 cut(s) 597
BspEI TCCGGA 2 cut(s) 292, 1246
BspFNI CGCG 2 cut(s) 9, 770
BspHI TCATGA 2 cut(s) 786, 1381
BspMI ACCTGC 1 cut(s) 1079
BspPI GGATC 7 cut(s) 104, 602, 670, 683, 789, 1004, 1017
BspQI GCTCTTC 1 cut(s) 1793
BspT107I GGYRCC 3 cut(s) 388, 521, 623
BsrI ACTGG 2 cut(s) 1538, 1658
BssECI CCNNGG 4 cut(s) 482, 590, 768, 1563
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 482, 1563
Bst2UI CCWGG 2 cut(s) 183, 318
Bst4CI ACNGT 3 cut(s) 568, 1057, 1610
Bst6I CTCTTC 2 cut(s) 183, 1793
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 5 cut(s) 21, 93, 876, 1190, 1395
BstDEI CTNAG 4 cut(s) 306, 384, 887, 930
BstDSI CCRYGG 3 cut(s) 482, 768, 1563
BstENI CCTNNNNNAGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 167, 301, 1255
BstFNI CGCG 2 cut(s) 9, 770
BstH2I RGCGCY 2 cut(s) 392, 1105
BstHHI GCGC 3 cut(s) 11, 391, 1104
BstMAI GTCTC 5 cut(s) 180, 204, 483, 523, 1421
BstMWI GCNNNNNNNGC 7 cut(s) 155, 224, 322, 701, 770, 880, 1792
BstNI CCWGG 2 cut(s) 183, 318
BstNSI RCATGY 3 cut(s) 23, 478, 878
BstSCI CCNGG 4 cut(s) 112, 181, 316, 364
BstSFI CTRYAG 2 cut(s) 276, 351
BstUI CGCG 2 cut(s) 9, 770
BstV1I GCAGC 2 cut(s) 1327, 1409
BstV2I GAAGAC 3 cut(s) 434, 1051, 1470
BstX2I RGATCY 3 cut(s) 675, 781, 1009
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 3 cut(s) 675, 781, 1009
Bsu15I ATCGAT 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 469
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 3 cut(s) 482, 768, 1563
BtrI CACGTC 1 cut(s) 1292
BtsCI GGATG 3 cut(s) 167, 301, 1255
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 6 cut(s) 573, 1035, 1053, 1190, 1545, 1665
BveI ACCTGC 1 cut(s) 1079
Cac8I GCNNGC 5 cut(s) 21, 93, 876, 1190, 1395
CciI TCATGA 2 cut(s) 786, 1381
CfoI GCGC 3 cut(s) 11, 391, 1104
Cfr13I GGNCC 2 cut(s) 1552, 1756
Cfr42I CCGCGG 1 cut(s) 771
ClaI ATCGAT 1 cut(s) 597
Csp6I GTAC 3 cut(s) 45, 69, 1590
CviQI GTAC 3 cut(s) 45, 69, 1590
DdeI CTNAG 4 cut(s) 306, 384, 887, 930
DinI GGCGCC 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 183, 1793
EarI CTCTTC 2 cut(s) 183, 1793
EciI GGCGGA 1 cut(s) 1706
Ecl136II GAGCTC 2 cut(s) 1696, 1786
Eco130I CCWWGG 2 cut(s) 482, 1563
Eco24I GRGCYC 2 cut(s) 1698, 1788
Eco47I GGWCC 2 cut(s) 1552, 1756
Eco53kI GAGCTC 2 cut(s) 1696, 1786
Eco57I CTGAAG 1 cut(s) 1774
Eco81I CCTNAGG 1 cut(s) 306
EcoICRI GAGCTC 2 cut(s) 1696, 1786
EcoNI CCTNNNNNAGG 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 1756
EcoRII CCWGG 2 cut(s) 181, 316
EcoT14I CCWWGG 2 cut(s) 482, 1563
EcoT22I ATGCAT 1 cut(s) 539
EcoT38I GRGCYC 2 cut(s) 1698, 1788
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 2 cut(s) 482, 1563
Esp3I CGTCTC 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 1202, 1234
FaqI GGGAC 2 cut(s) 1565, 1769
FauI CCCGC 1 cut(s) 775
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 4 cut(s) 771, 1316, 1398, 1796
FokI GGATG 3 cut(s) 154, 308, 1262
FriOI GRGCYC 2 cut(s) 1698, 1788
Fsp4HI GCNGC 4 cut(s) 771, 1316, 1398, 1796
FspBI CTAG 8 cut(s) 12, 138, 224, 471, 956, 1287, 1298, 1344
GlaI GCGC 3 cut(s) 10, 390, 1103
GluI GCNGC 4 cut(s) 771, 1316, 1398, 1796
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 3 cut(s) 36, 390, 1409
HaeII RGCGCY 2 cut(s) 392, 1105
HaeIII GGCC 1 cut(s) 469
HapII CCGG 6 cut(s) 114, 210, 293, 366, 494, 1247
HhaI GCGC 3 cut(s) 11, 391, 1104
Hin1I GRCGYC 1 cut(s) 389
Hin6I GCGC 3 cut(s) 9, 389, 1102
HinP1I GCGC 3 cut(s) 9, 389, 1102
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HinfI GANTC 7 cut(s) 4, 430, 556, 1066, 1475, 1632, 1736
HpaII CCGG 6 cut(s) 114, 210, 293, 366, 494, 1247
HphI GGTGA 6 cut(s) 224, 698, 751, 1552, 1627, 1630
Hpy166II GTNNAC 2 cut(s) 853, 1149
Hpy188I TCNGA 6 cut(s) 594, 680, 710, 1180, 1456, 1750
Hpy8I GTNNAC 2 cut(s) 853, 1149
HpyAV CCTTC 1 cut(s) 1518
HpyCH4III ACNGT 3 cut(s) 568, 1057, 1610
HpyCH4IV ACGT 4 cut(s) 71, 715, 1145, 1291
HpyCH4V TGCA 8 cut(s) 19, 332, 439, 537, 764, 1315, 1397, 1646
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 224, 322, 701, 770, 880, 1792
HpyF3I CTNAG 4 cut(s) 306, 384, 887, 930
HpySE526I ACGT 4 cut(s) 71, 715, 1145, 1291
Hsp92I GRCGYC 1 cut(s) 389
HspAI GCGC 3 cut(s) 9, 389, 1102
KasI GGCGCC 1 cut(s) 388
Kpn2I TCCGGA 2 cut(s) 292, 1246
Ksp22I TGATCA 1 cut(s) 610
KspI CCGCGG 1 cut(s) 771
LguI GCTCTTC 1 cut(s) 1793
LmnI GCTCC 8 cut(s) 116, 409, 496, 1234, 1390, 1443, 1693, 1783
Lsp1109I GCAGC 2 cut(s) 1327, 1409
LweI GCATC 4 cut(s) 732, 892, 1270, 1302
MaeI CTAG 8 cut(s) 12, 138, 224, 471, 956, 1287, 1298, 1344
MaeII ACGT 4 cut(s) 71, 715, 1145, 1291
MaeIII GTNAC 3 cut(s) 562, 686, 1057
MboII GAAGA 9 cut(s) 170, 278, 439, 523, 583, 1056, 1222, 1470, 1780
MfeI CAATTG 2 cut(s) 434, 1349
MflI RGATCY 3 cut(s) 675, 781, 1009
MhlI GDGCHC 4 cut(s) 493, 1231, 1698, 1788
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 3 cut(s) 424, 1484, 1626
Mph1103I ATGCAT 1 cut(s) 539
MroI TCCGGA 2 cut(s) 292, 1246
MroXI GAANNNNTTC 2 cut(s) 270, 360
MseI TTAA 3 cut(s) 104, 507, 1164
MslI CAYNNNNRTG 3 cut(s) 159, 1055, 1562
MspA1I CMGCKG 3 cut(s) 410, 770, 1400
MspI CCGG 6 cut(s) 114, 210, 293, 366, 494, 1247
MspR9I CCNGG 4 cut(s) 114, 183, 318, 366
MunI CAATTG 2 cut(s) 434, 1349
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 183, 318
MvnI CGCG 2 cut(s) 9, 770
MwoI GCNNNNNNNGC 7 cut(s) 155, 224, 322, 701, 770, 880, 1792
NarI GGCGCC 1 cut(s) 389
NciI CCSGG 2 cut(s) 114, 366
NcoI CCATGG 2 cut(s) 482, 1563
NmeAIII GCCGAG 1 cut(s) 968
NmuCI GTSAC 3 cut(s) 562, 686, 1057
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 3 cut(s) 23, 478, 878
OliI CACNNNNGTG 1 cut(s) 1055
PaeI GCATGC 2 cut(s) 23, 878
PagI TCATGA 2 cut(s) 786, 1381
PciSI GCTCTTC 1 cut(s) 1793
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 270, 360
PfeI GAWTC 3 cut(s) 556, 1066, 1736
PflFI GACNNNGTC 1 cut(s) 1293
PflMI CCANNNNNTGG 1 cut(s) 1021
PfoI TCCNGGA 2 cut(s) 112, 364
PkrI GCNGC 4 cut(s) 772, 1317, 1399, 1797
PleI GAGTC 3 cut(s) 424, 1483, 1626
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 3 cut(s) 424, 1483, 1626
PpuMI RGGWCCY 1 cut(s) 1756
Psp124BI GAGCTC 2 cut(s) 1698, 1788
Psp1406I AACGTT 1 cut(s) 1145
Psp5II RGGWCCY 1 cut(s) 1756
Psp6I CCWGG 2 cut(s) 181, 316
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 2 cut(s) 181, 316
PspPI GGNCC 2 cut(s) 1552, 1756
PspPPI RGGWCCY 1 cut(s) 1756
PsuI RGATCY 3 cut(s) 675, 781, 1009
PsyI GACNNNGTC 1 cut(s) 1293
RsaI GTAC 3 cut(s) 46, 70, 1591
RsaNI GTAC 3 cut(s) 45, 69, 1590
RseI CAYNNNNRTG 3 cut(s) 159, 1055, 1562
SacI GAGCTC 2 cut(s) 1698, 1788
SacII CCGCGG 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 1793
SaqAI TTAA 3 cut(s) 104, 507, 1164
SatI GCNGC 4 cut(s) 771, 1316, 1398, 1796
Sau96I GGNCC 2 cut(s) 1552, 1756
SchI GAGTC 3 cut(s) 424, 1484, 1626
ScrFI CCNGG 4 cut(s) 114, 183, 318, 366
SduI GDGCHC 4 cut(s) 493, 1231, 1698, 1788
SfaNI GCATC 4 cut(s) 732, 892, 1270, 1302
SfcI CTRYAG 2 cut(s) 276, 351
SfoI GGCGCC 1 cut(s) 390
Sfr303I CCGCGG 1 cut(s) 771
SgrBI CCGCGG 1 cut(s) 771
SinI GGWCC 2 cut(s) 1552, 1756
SmiMI CAYNNNNRTG 3 cut(s) 159, 1055, 1562
SmlI CTYRAG 3 cut(s) 856, 1416, 1520
SmoI CTYRAG 3 cut(s) 856, 1416, 1520
SphI GCATGC 2 cut(s) 23, 878
SsiI CCGC 7 cut(s) 410, 673, 768, 770, 901, 1400, 1691
SspDI GGCGCC 1 cut(s) 388
SspI AATATT 1 cut(s) 897
SspMI CTAG 8 cut(s) 12, 138, 224, 471, 956, 1287, 1298, 1344
SstI GAGCTC 2 cut(s) 1698, 1788
StyD4I CCNGG 4 cut(s) 112, 181, 316, 364
StyI CCWWGG 2 cut(s) 482, 1563
TaaI ACNGT 3 cut(s) 568, 1057, 1610
TaiI ACGT 4 cut(s) 74, 718, 1148, 1294
TaqI TCGA 4 cut(s) 597, 1034, 1324, 1761
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 3 cut(s) 556, 1066, 1736
Tru1I TTAA 3 cut(s) 104, 507, 1164
Tru9I TTAA 3 cut(s) 104, 507, 1164
TscAI CASTG 6 cut(s) 573, 1035, 1060, 1190, 1545, 1665
TseFI GTSAC 3 cut(s) 562, 686, 1057
TseI GCWGC 3 cut(s) 1315, 1397, 1795
Tsp45I GTSAC 3 cut(s) 562, 686, 1057
TspDTI ATGAA 7 cut(s) 117, 121, 744, 766, 803, 1712, 1722
TspGWI ACGGA 2 cut(s) 573, 1076
TspRI CASTG 6 cut(s) 573, 1035, 1060, 1190, 1545, 1665
Tth111I GACNNNGTC 1 cut(s) 1293
Van91I CCANNNNNTGG 1 cut(s) 1021
VpaK11BI GGWCC 2 cut(s) 1552, 1756
XagI CCTNNNNNAGG 1 cut(s) 331
XapI RAATTY 2 cut(s) 731, 1774
XbaI TCTAGA 1 cut(s) 1286
XceI RCATGY 3 cut(s) 23, 478, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 1545
XmnI GAANNNNTTC 2 cut(s) 270, 360
XspI CTAG 8 cut(s) 12, 138, 224, 471, 956, 1287, 1298, 1344
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.