FvH4_4g12502

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
16182581 .. 16184287
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12502.t1

Sequence Viewer

Length: 1707 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATAATATTGGGAATATGCTAAGGGATGTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTAATCGTATTTATAGATGACATTTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATAGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAATATTTTTCAAAGATTGCTGCTCCTCTCACAAACTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGGCGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAACTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGAGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGAGCTCTTCAGGCAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

569

Amino Acids

65.63

Weight (kDa)

9.3

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 40 - 107 9.7e-12 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 170 - 264 1.2e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 196 - 294 3.3e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 409 - 466 1.3e-20 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 355
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 7 cut(s) 235, 692, 734, 986, 1090, 1152, 1595
AclWI GGATC 4 cut(s) 123, 338, 351, 1103
AcoI YGGCCR 1 cut(s) 1331
AcsI RAATTY 1 cut(s) 1679
AcuI CTGAAG 1 cut(s) 1678
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 1495
AfiI CCNNNNNNNGG 4 cut(s) 355, 492, 698, 1503
AgsI TTSAA 7 cut(s) 456, 506, 536, 544, 688, 1237, 1315
AjnI CCWGG 1 cut(s) 904
AjuI GAANNNNNNNTTGG 2 cut(s) 1565, 1597
AleI CACNNNNGTG 1 cut(s) 389
Alw21I GWGCWC 3 cut(s) 565, 1602, 1692
Alw26I GTCTC 3 cut(s) 754, 841, 1178
AlwI GGATC 4 cut(s) 123, 338, 351, 1103
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 3 cut(s) 1067, 1331, 1395
ApeKI GCWGC 7 cut(s) 464, 649, 731, 1154, 1277, 1355, 1699
ApoI RAATTY 1 cut(s) 1679
ArsI GACNNNNNNTTYG 2 cut(s) 1652, 1684
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 2 cut(s) 15, 438
AspS9I GGNCC 2 cut(s) 1456, 1660
AsuC2I CCSGG 1 cut(s) 1287
AsuHPI GGTGA 3 cut(s) 1456, 1531, 1534
AsuII TTCGAA 1 cut(s) 1142
AvaII GGWCC 2 cut(s) 1456, 1660
AvrII CCTAGG 1 cut(s) 8
BalI TGGCCA 1 cut(s) 1333
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 1602, 1692
BbsI GAAGAC 2 cut(s) 385, 803
Bbv12I GWGCWC 3 cut(s) 565, 1602, 1692
BbvI GCAGC 6 cut(s) 451, 661, 743, 1166, 1264, 1367
BccI CCATC 5 cut(s) 852, 856, 967, 1123, 1496
BceAI ACGGC 2 cut(s) 35, 1414
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BciT130I CCWGG 1 cut(s) 906
BcnI CCSGG 1 cut(s) 1287
BcoDI GTCTC 3 cut(s) 754, 841, 1178
BfaI CTAG 4 cut(s) 9, 621, 632, 678
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 2 cut(s) 16, 439
BfuAI ACCTGC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 9 cut(s) 465, 650, 692, 732, 1152, 1155, 1278, 1356, 1700
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 9 cut(s) 466, 651, 693, 733, 1153, 1156, 1279, 1357, 1701
Bme1390I CCNGG 2 cut(s) 906, 1287
Bme18I GGWCC 2 cut(s) 1456, 1660
BmgT120I GGNCC 2 cut(s) 1456, 1660
BmiI GGNNCC 7 cut(s) 14, 345, 778, 1150, 1457, 1661, 1662
BmrFI CCNGG 2 cut(s) 906, 1287
BmsI GCATC 4 cut(s) 226, 604, 636, 919
BpiI GAAGAC 2 cut(s) 385, 803
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 1142
BpuEI CTTGAG 3 cut(s) 175, 734, 1445
BpuMI CCSGG 1 cut(s) 1287
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 3 cut(s) 8, 17, 1467
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 6 cut(s) 324, 354, 547, 577, 585, 615
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 492, 698, 1503
Bse1I ACTGG 5 cut(s) 81, 1053, 1070, 1442, 1562
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 3 cut(s) 8, 17, 1467
BseGI GGATG 5 cut(s) 112, 589, 867, 901, 1282
BseLI CCNNNNNNNGG 4 cut(s) 355, 492, 698, 1503
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 5 cut(s) 81, 1053, 1070, 1442, 1562
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 6 cut(s) 451, 661, 743, 1166, 1264, 1367
BsgI GTGCAG 1 cut(s) 1533
BshFI GGCC 3 cut(s) 1069, 1333, 1397
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 565, 1602, 1692
BsiSI CCGG 2 cut(s) 581, 1286
BslFI GGGAC 3 cut(s) 87, 1469, 1673
BslI CCNNNNNNNGG 4 cut(s) 355, 492, 698, 1503
BsmAI GTCTC 3 cut(s) 754, 841, 1178
BsmFI GGGAC 3 cut(s) 87, 1469, 1673
BsnI GGCC 3 cut(s) 1069, 1333, 1397
Bsp119I TTCGAA 1 cut(s) 1142
Bsp1286I GDGCHC 3 cut(s) 565, 1602, 1692
Bsp13I TCCGGA 1 cut(s) 580
Bsp19I CCATGG 1 cut(s) 1467
BspACI CCGC 7 cut(s) 235, 692, 734, 986, 1090, 1152, 1595
BspANI GGCC 3 cut(s) 1069, 1333, 1397
BspEI TCCGGA 1 cut(s) 580
BspHI TCATGA 2 cut(s) 120, 715
BspLI GGNNCC 7 cut(s) 14, 345, 778, 1150, 1457, 1661, 1662
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 4 cut(s) 123, 338, 351, 1103
BspQI GCTCTTC 1 cut(s) 1697
BspT104I TTCGAA 1 cut(s) 1142
BspT107I GGYRCC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 5 cut(s) 81, 1053, 1070, 1442, 1562
BssECI CCNNGG 3 cut(s) 8, 17, 1467
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 8, 1467
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 3 cut(s) 391, 1101, 1514
Bst6I CTCTTC 5 cut(s) 1171, 1224, 1232, 1337, 1697
BstACI GRCGYC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 1277
BstBI TTCGAA 1 cut(s) 1142
BstC8I GCNNGC 4 cut(s) 210, 524, 729, 1005
BstDEI CTNAG 4 cut(s) 101, 221, 264, 935
BstDSI CCRYGG 2 cut(s) 17, 1467
BstF5I GGATG 5 cut(s) 112, 589, 867, 901, 1282
BstH2I RGCGCY 2 cut(s) 16, 439
BstHHI GCGC 2 cut(s) 15, 438
BstMAI GTCTC 3 cut(s) 754, 841, 1178
BstMWI GCNNNNNNNGC 7 cut(s) 10, 19, 214, 688, 1049, 1277, 1696
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 904, 1285
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 6 cut(s) 451, 661, 743, 1166, 1264, 1367
BstV2I GAAGAC 2 cut(s) 385, 803
BstX2I RGATCY 2 cut(s) 115, 343
BstYI RGATCY 2 cut(s) 115, 343
BsuRI GGCC 3 cut(s) 1069, 1333, 1397
BtgI CCRYGG 2 cut(s) 17, 1467
BtsCI GGATG 5 cut(s) 112, 589, 867, 901, 1282
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 7 cut(s) 369, 387, 524, 880, 1032, 1449, 1569
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 4 cut(s) 210, 524, 729, 1005
CciI TCATGA 2 cut(s) 120, 715
CfoI GCGC 2 cut(s) 15, 438
Cfr13I GGNCC 2 cut(s) 1456, 1660
Csp6I GTAC 1 cut(s) 1494
CviQI GTAC 1 cut(s) 1494
DdeI CTNAG 4 cut(s) 101, 221, 264, 935
DinI GGCGCC 1 cut(s) 14
DraI TTTAAA 1 cut(s) 1198
EaeI YGGCCR 1 cut(s) 1331
Eam1104I CTCTTC 5 cut(s) 1171, 1224, 1232, 1337, 1697
EarI CTCTTC 5 cut(s) 1171, 1224, 1232, 1337, 1697
EciI GGCGGA 1 cut(s) 1610
Ecl136II GAGCTC 2 cut(s) 1600, 1690
Eco130I CCWWGG 2 cut(s) 8, 1467
Eco24I GRGCYC 2 cut(s) 1602, 1692
Eco47I GGWCC 2 cut(s) 1456, 1660
Eco53kI GAGCTC 2 cut(s) 1600, 1690
Eco57I CTGAAG 1 cut(s) 1678
EcoICRI GAGCTC 2 cut(s) 1600, 1690
EcoO109I RGGNCCY 1 cut(s) 1660
EcoRII CCWGG 1 cut(s) 904
EcoT14I CCWWGG 2 cut(s) 8, 1467
EcoT38I GRGCYC 2 cut(s) 1602, 1692
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 2 cut(s) 8, 1467
FalI AAGNNNNNCTT 2 cut(s) 536, 568
FaqI GGGAC 3 cut(s) 87, 1469, 1673
FauI CCCGC 1 cut(s) 1083
FauNDI CATATG 1 cut(s) 1273
Fnu4HI GCNGC 9 cut(s) 465, 650, 692, 732, 1152, 1155, 1278, 1356, 1700
FokI GGATG 5 cut(s) 119, 596, 874, 888, 1269
FriOI GRGCYC 2 cut(s) 1602, 1692
Fsp4HI GCNGC 9 cut(s) 465, 650, 692, 732, 1152, 1155, 1278, 1356, 1700
FspBI CTAG 4 cut(s) 9, 621, 632, 678
GlaI GCGC 2 cut(s) 14, 437
GluI GCNGC 9 cut(s) 465, 650, 692, 732, 1152, 1155, 1278, 1356, 1700
GsuI CTGGAG 1 cut(s) 743
HaeII RGCGCY 2 cut(s) 16, 439
HaeIII GGCC 3 cut(s) 1069, 1333, 1397
HapII CCGG 2 cut(s) 581, 1286
HhaI GCGC 2 cut(s) 15, 438
Hin1I GRCGYC 1 cut(s) 13
Hin6I GCGC 2 cut(s) 13, 436
HinP1I GCGC 2 cut(s) 13, 436
HinfI GANTC 5 cut(s) 400, 808, 1186, 1536, 1640
HpaII CCGG 2 cut(s) 581, 1286
HphI GGTGA 3 cut(s) 1456, 1531, 1534
Hpy166II GTNNAC 2 cut(s) 187, 825
Hpy188I TCNGA 5 cut(s) 514, 789, 1308, 1377, 1654
Hpy188III TCNNGA 9 cut(s) 121, 146, 192, 536, 581, 716, 722, 1637, 1658
Hpy8I GTNNAC 2 cut(s) 187, 825
HpyAV CCTTC 6 cut(s) 50, 196, 323, 1122, 1309, 1422
HpyCH4III ACNGT 3 cut(s) 391, 1101, 1514
HpyCH4V TGCA 6 cut(s) 649, 731, 888, 1271, 1355, 1550
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 19, 214, 688, 1049, 1277, 1696
HpyF3I CTNAG 4 cut(s) 101, 221, 264, 935
Hsp92I GRCGYC 1 cut(s) 13
HspAI GCGC 2 cut(s) 13, 436
KasI GGCGCC 1 cut(s) 12
KflI GGGWCCC 1 cut(s) 1660
Kpn2I TCCGGA 1 cut(s) 580
LguI GCTCTTC 1 cut(s) 1697
LmnI GCTCC 8 cut(s) 205, 472, 568, 724, 776, 1148, 1597, 1687
Lsp1109I GCAGC 6 cut(s) 451, 661, 743, 1166, 1264, 1367
LweI GCATC 4 cut(s) 226, 604, 636, 919
MaeI CTAG 4 cut(s) 9, 621, 632, 678
MaeIII GTNAC 1 cut(s) 391
MboII GAAGA 9 cut(s) 390, 556, 803, 867, 1188, 1241, 1249, 1354, 1684
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 2 cut(s) 115, 343
MhlI GDGCHC 3 cut(s) 565, 1602, 1692
MlsI TGGCCA 1 cut(s) 1333
MluCI AATT 9 cut(s) 539, 547, 683, 703, 1350, 1580, 1589, 1614, 1679
MluNI TGGCCA 1 cut(s) 1333
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 817, 1180, 1530
Mox20I TGGCCA 1 cut(s) 1333
MroI TCCGGA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 1333
MseI TTAA 4 cut(s) 498, 840, 869, 1197
MslI CAYNNNNRTG 3 cut(s) 389, 1298, 1466
Msp20I TGGCCA 1 cut(s) 1333
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 2 cut(s) 581, 1286
MspR9I CCNGG 2 cut(s) 906, 1287
MunI CAATTG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 906
MwoI GCNNNNNNNGC 7 cut(s) 10, 19, 214, 688, 1049, 1277, 1696
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 1 cut(s) 1287
NcoI CCATGG 1 cut(s) 1467
NdeI CATATG 1 cut(s) 1273
NlaIV GGNNCC 7 cut(s) 14, 345, 778, 1150, 1457, 1661, 1662
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 1 cut(s) 1142
OliI CACNNNNGTG 1 cut(s) 389
PaeI GCATGC 1 cut(s) 212
PagI TCATGA 2 cut(s) 120, 715
PciSI GCTCTTC 1 cut(s) 1697
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 1663
PfeI GAWTC 2 cut(s) 400, 1640
PflMI CCANNNNNTGG 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 904
PkrI GCNGC 9 cut(s) 466, 651, 693, 733, 1153, 1156, 1279, 1357, 1701
PleI GAGTC 3 cut(s) 816, 1180, 1530
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 3 cut(s) 816, 1180, 1530
PpuMI RGGWCCY 1 cut(s) 1660
Psp124BI GAGCTC 2 cut(s) 1602, 1692
Psp5II RGGWCCY 1 cut(s) 1660
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 7 cut(s) 14, 345, 778, 1150, 1457, 1661, 1662
PspPI GGNCC 2 cut(s) 1456, 1660
PspPPI RGGWCCY 1 cut(s) 1660
PsuI RGATCY 2 cut(s) 115, 343
RsaI GTAC 1 cut(s) 1495
RsaNI GTAC 1 cut(s) 1494
RseI CAYNNNNRTG 3 cut(s) 389, 1298, 1466
SacI GAGCTC 2 cut(s) 1602, 1692
SapI GCTCTTC 1 cut(s) 1697
SaqAI TTAA 4 cut(s) 498, 840, 869, 1197
SatI GCNGC 9 cut(s) 465, 650, 692, 732, 1152, 1155, 1278, 1356, 1700
Sau96I GGNCC 2 cut(s) 1456, 1660
SchI GAGTC 3 cut(s) 817, 1180, 1530
ScrFI CCNGG 2 cut(s) 906, 1287
SduI GDGCHC 3 cut(s) 565, 1602, 1692
SfaNI GCATC 4 cut(s) 226, 604, 636, 919
SfcI CTRYAG 1 cut(s) 1008
SfoI GGCGCC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 1142
SinI GGWCC 2 cut(s) 1456, 1660
SmiMI CAYNNNNRTG 3 cut(s) 389, 1298, 1466
SmlI CTYRAG 3 cut(s) 190, 749, 1424
SmoI CTYRAG 3 cut(s) 190, 749, 1424
SphI GCATGC 1 cut(s) 212
Sse9I AATT 9 cut(s) 539, 547, 683, 703, 1350, 1580, 1589, 1614, 1679
SsiI CCGC 7 cut(s) 235, 692, 734, 986, 1090, 1152, 1595
SspDI GGCGCC 1 cut(s) 12
SspI AATATT 3 cut(s) 88, 231, 449
SspMI CTAG 4 cut(s) 9, 621, 632, 678
SstI GAGCTC 2 cut(s) 1602, 1692
StyD4I CCNGG 2 cut(s) 904, 1285
StyI CCWWGG 2 cut(s) 8, 1467
TaaI ACNGT 3 cut(s) 391, 1101, 1514
TaqI TCGA 7 cut(s) 41, 368, 658, 940, 1123, 1142, 1666
TasI AATT 9 cut(s) 539, 547, 683, 703, 1350, 1580, 1589, 1614, 1679
TauI GCSGC 2 cut(s) 694, 1154
TfiI GAWTC 2 cut(s) 400, 1640
Tru1I TTAA 4 cut(s) 498, 840, 869, 1197
Tru9I TTAA 4 cut(s) 498, 840, 869, 1197
TscAI CASTG 7 cut(s) 369, 394, 524, 880, 1032, 1449, 1569
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 7 cut(s) 464, 649, 731, 1154, 1277, 1355, 1699
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 7 cut(s) 69, 137, 1049, 1242, 1355, 1616, 1626
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 7 cut(s) 369, 394, 524, 880, 1032, 1449, 1569
Van91I CCANNNNNTGG 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 1456, 1660
XapI RAATTY 1 cut(s) 1679
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 1449
XmaJI CCTAGG 1 cut(s) 8
XspI CTAG 4 cut(s) 9, 621, 632, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.