FvH4_6g21771

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Reverse (-)
15331441 .. 15336010
4570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21771.t1

Sequence Viewer

Length: 4329 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCATGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCACGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCGGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTTGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCGATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTCTTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTCCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAAGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGATATCTTGGTTTACTCAAGAAAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAGAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCCCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTAGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTCCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTGGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1443

Amino Acids

162.95

Weight (kDa)

8.9

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 1.1e-14 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 2.8e-33 Retroviral aspartyl protease
RVT_1 PF00078 596 - 732 3.6e-21 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 777 - 871 4.1e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 803 - 901 1.2e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1016 - 1073 4e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1305 - 1369 5.8e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 2 cut(s) 820, 2234
Acc65I GGTACC 1 cut(s) 3530
AccB1I GGYRCC 7 cut(s) 12, 185, 1049, 1780, 1910, 3530, 3712
AccB7I CCANNNNNTGG 1 cut(s) 2176
AccII CGCG 3 cut(s) 620, 1122, 2057
AccIII TCCGGA 2 cut(s) 1684, 2401
AcoI YGGCCR 3 cut(s) 636, 668, 3152
AcsI RAATTY 5 cut(s) 420, 2018, 3500, 3671, 3902
AcuI CTGAAG 5 cut(s) 714, 943, 1011, 3500, 3529
AcyI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 4 cut(s) 1159, 1183, 3316, 3532
AfiI CCNNNNNNNGG 9 cut(s) 695, 979, 1150, 1972, 2176, 2313, 2519, 3324, 3947
AgeI ACCGGT 1 cut(s) 4180
AjiI CACGTC 1 cut(s) 2447
AjnI CCWGG 4 cut(s) 291, 1053, 1708, 2725
AjuI GAANNNNNNNTTGG 2 cut(s) 3768, 3800
AleI CACNNNNGTG 1 cut(s) 2210
Alw21I GWGCWC 6 cut(s) 124, 248, 667, 2386, 3423, 3514
Alw26I GTCTC 5 cut(s) 802, 1293, 1317, 2575, 2662
Ama87I CYCGRG 1 cut(s) 3985
Aor13HI TCCGGA 2 cut(s) 1684, 2401
AoxI GGCC 7 cut(s) 636, 668, 2888, 3152, 3216, 3790, 3997
ApoI RAATTY 5 cut(s) 420, 2018, 3500, 3671, 3902
ArsI GACNNNNNNTTYG 4 cut(s) 3473, 3505, 4144, 4176
AsiGI ACCGGT 1 cut(s) 4180
Asp700I GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4182
Asp718I GGTACC 1 cut(s) 3530
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 6 cut(s) 15, 349, 1124, 1783, 2259, 3715
AspS9I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3277, 3481, 3791, 3998
AsuC2I CCSGG 4 cut(s) 844, 1227, 1758, 3108
AsuHPI GGTGA 8 cut(s) 283, 1337, 1342, 2038, 3277, 3352, 3355, 3926
AsuII TTCGAA 2 cut(s) 1501, 2963
AvaI CYCGRG 1 cut(s) 3985
AvaII GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3277, 3481
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 2 cut(s) 562, 1054
BalI TGGCCA 2 cut(s) 638, 3154
BamHI GGATCC 2 cut(s) 1962, 2164
BanI GGYRCC 7 cut(s) 12, 185, 1049, 1780, 1910, 3530, 3712
BanII GRGCYC 3 cut(s) 124, 3423, 3514
BarI GAAGNNNNNNTAC 4 cut(s) 1482, 1514, 4080, 4112
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 4 cut(s) 1017, 1826, 2206, 2624
Bbv12I GWGCWC 6 cut(s) 124, 248, 667, 2386, 3423, 3514
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 3235
BcgI CGANNNNNNTGC 4 cut(s) 1136, 1170, 2459, 2493
BciT130I CCWGG 4 cut(s) 293, 1055, 1710, 2727
BciVI GTATCC 4 cut(s) 1624, 4062, 4099, 4320
BclI TGATCA 1 cut(s) 1897
BcnI CCSGG 4 cut(s) 844, 1227, 1758, 3108
BcoDI GTCTC 5 cut(s) 802, 1293, 1317, 2575, 2662
BfmI CTRYAG 3 cut(s) 1668, 1743, 2829
BfoI RGCGCY 4 cut(s) 16, 1784, 2260, 3716
BfuAI ACCTGC 2 cut(s) 820, 2234
BfuI GTATCC 4 cut(s) 1624, 4062, 4099, 4320
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 3895
BlnI CCTAGG 1 cut(s) 8
BlpI GCTNAGC 1 cut(s) 3980
Bme1390I CCNGG 8 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2727, 3108
Bme18I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3277, 3481
BmeT110I CYCGRG 1 cut(s) 3985
BmgBI CACGTC 1 cut(s) 2447
BmgT120I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3277, 3481, 3791, 3998
BmrFI CCNGG 8 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2727, 3108
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 7 cut(s) 193, 334, 2019, 2425, 2457, 2740, 4290
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 4 cut(s) 1017, 1826, 2206, 2624
BplI GAGNNNNNCTC 4 cut(s) 979, 1011, 3828, 3860
BpmI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2564, 4038
Bpu10I CCTNAGC 3 cut(s) 101, 497, 4214
Bpu1102I GCTNAGC 1 cut(s) 3980
Bpu14I TTCGAA 2 cut(s) 1501, 2963
BpuEI CTTGAG 4 cut(s) 2128, 2555, 3266, 3830
BpuMI CCSGG 4 cut(s) 844, 1227, 1758, 3108
Bsa29I ATCGAT 2 cut(s) 1884, 4039
BsaHI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 4 cut(s) 1322, 1684, 2401, 4180
Bsc4I CCNNNNNNNGG 9 cut(s) 695, 979, 1150, 1972, 2176, 2313, 2519, 3324, 3947
Bse118I RCCGGY 1 cut(s) 4180
Bse1I ACTGG 8 cut(s) 81, 317, 690, 823, 2874, 2891, 3263, 3383
Bse21I CCTNAGG 1 cut(s) 1698
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1684, 2401
BseBI CCWGG 4 cut(s) 293, 1055, 1710, 2727
BseCI ATCGAT 2 cut(s) 1884, 4039
BseLI CCNNNNNNNGG 9 cut(s) 695, 979, 1150, 1972, 2176, 2313, 2519, 3324, 3947
BseMI GCAATG 1 cut(s) 67
BseNI ACTGG 8 cut(s) 81, 317, 690, 823, 2874, 2891, 3263, 3383
BseRI GAGGAG 3 cut(s) 1715, 2280, 4304
BseSI GKGCMC 2 cut(s) 562, 1054
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 3354
Bsh1236I CGCG 3 cut(s) 620, 1122, 2057
Bsh1285I CGRYCG 1 cut(s) 4198
BshFI GGCC 7 cut(s) 638, 670, 2890, 3154, 3218, 3792, 3999
BshNI GGYRCC 7 cut(s) 12, 185, 1049, 1780, 1910, 3530, 3712
BshTI ACCGGT 1 cut(s) 4180
BshVI ATCGAT 2 cut(s) 1884, 4039
BsiEI CGRYCG 1 cut(s) 4198
BsiHKAI GWGCWC 6 cut(s) 124, 248, 667, 2386, 3423, 3514
BsiHKCI CYCGRG 1 cut(s) 3985
BsiSI CCGG 8 cut(s) 843, 1227, 1323, 1685, 1758, 2402, 3107, 4181
BslFI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1988, 3019, 3290, 3494
BslI CCNNNNNNNGG 9 cut(s) 695, 979, 1150, 1972, 2176, 2313, 2519, 3324, 3947
BsmAI GTCTC 5 cut(s) 802, 1293, 1317, 2575, 2662
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1988, 3019, 3290, 3494
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 7 cut(s) 638, 670, 2890, 3154, 3218, 3792, 3999
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 3985
Bsp119I TTCGAA 2 cut(s) 1501, 2963
Bsp1286I GDGCHC 8 cut(s) 124, 248, 562, 667, 1054, 2386, 3423, 3514
Bsp13I TCCGGA 2 cut(s) 1684, 2401
Bsp1720I GCTNAGC 1 cut(s) 3980
Bsp19I CCATGG 3 cut(s) 633, 871, 3288
BspANI GGCC 7 cut(s) 638, 670, 2890, 3154, 3218, 3792, 3999
BspDI ATCGAT 2 cut(s) 1884, 4039
BspEI TCCGGA 2 cut(s) 1684, 2401
BspFNI CGCG 3 cut(s) 620, 1122, 2057
BspHI TCATGA 3 cut(s) 949, 2073, 2536
BspMI ACCTGC 2 cut(s) 820, 2234
BspQI GCTCTTC 1 cut(s) 3519
BspT104I TTCGAA 2 cut(s) 1501, 2963
BspT107I GGYRCC 7 cut(s) 12, 185, 1049, 1780, 1910, 3530, 3712
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 4180
BsrI ACTGG 8 cut(s) 81, 317, 690, 823, 2874, 2891, 3263, 3383
BssAI RCCGGY 1 cut(s) 4180
BssNI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 7 cut(s) 8, 189, 633, 871, 1531, 3288, 3941
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 4 cut(s) 293, 1055, 1710, 2727
Bst4CI ACNGT 5 cut(s) 369, 1855, 2212, 2922, 3335
BstACI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
BstAPI GCANNNNNTGC 2 cut(s) 3098, 4300
BstBI TTCGAA 2 cut(s) 1501, 2963
BstC8I GCNNGC 8 cut(s) 324, 328, 1134, 1206, 2345, 2550, 2826, 3749
BstDSI CCRYGG 5 cut(s) 17, 633, 871, 2055, 3288
BstENI CCTNNNNNAGG 1 cut(s) 3945
BstFNI CGCG 3 cut(s) 620, 1122, 2057
BstH2I RGCGCY 4 cut(s) 16, 1784, 2260, 3716
BstHHI GCGC 6 cut(s) 15, 349, 1124, 1783, 2259, 3715
BstMAI GTCTC 5 cut(s) 802, 1293, 1317, 2575, 2662
BstMCI CGRYCG 1 cut(s) 4198
BstNI CCWGG 4 cut(s) 293, 1055, 1710, 2727
BstNSI RCATGY 2 cut(s) 1136, 1310
BstSCI CCNGG 8 cut(s) 291, 842, 1053, 1225, 1708, 1756, 2725, 3106
BstSFI CTRYAG 3 cut(s) 1668, 1743, 2829
BstSLI GKGCMC 2 cut(s) 562, 1054
BstUI CGCG 3 cut(s) 620, 1122, 2057
BstV2I GAAGAC 4 cut(s) 1017, 1826, 2206, 2624
BstX2I RGATCY 4 cut(s) 1962, 2068, 2164, 3895
BstYI RGATCY 4 cut(s) 1962, 2068, 2164, 3895
Bsu15I ATCGAT 2 cut(s) 1884, 4039
Bsu36I CCTNAGG 1 cut(s) 1698
BsuI GTATCC 4 cut(s) 1624, 4062, 4099, 4320
BsuRI GGCC 7 cut(s) 638, 670, 2890, 3154, 3218, 3792, 3999
BsuTUI ATCGAT 2 cut(s) 1884, 4039
BtgI CCRYGG 5 cut(s) 17, 633, 871, 2055, 3288
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 2447
BtsI GCAGTG 4 cut(s) 1066, 2190, 3549, 3746
BveI ACCTGC 2 cut(s) 820, 2234
Cac8I GCNNGC 8 cut(s) 324, 328, 1134, 1206, 2345, 2550, 2826, 3749
CciI TCATGA 3 cut(s) 949, 2073, 2536
CfoI GCGC 6 cut(s) 15, 349, 1124, 1783, 2259, 3715
Cfr10I RCCGGY 1 cut(s) 4180
Cfr13I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3277, 3481, 3791, 3998
Cfr42I CCGCGG 1 cut(s) 2058
ClaI ATCGAT 2 cut(s) 1884, 4039
CseI GACGC 1 cut(s) 626
Csp6I GTAC 4 cut(s) 1158, 1182, 3315, 3531
CspAI ACCGGT 1 cut(s) 4180
CviQI GTAC 4 cut(s) 1158, 1182, 3315, 3531
DinI GGCGCC 3 cut(s) 14, 1782, 3714
DraI TTTAAA 1 cut(s) 3019
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 636, 668, 3152
EciI GGCGGA 1 cut(s) 3431
Ecl136II GAGCTC 3 cut(s) 122, 3421, 3512
Eco130I CCWWGG 7 cut(s) 8, 189, 633, 871, 1531, 3288, 3941
Eco24I GRGCYC 3 cut(s) 124, 3423, 3514
Eco31I GGTCTC 1 cut(s) 802
Eco32I GATATC 1 cut(s) 2131
Eco47I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3277, 3481
Eco53kI GAGCTC 3 cut(s) 122, 3421, 3512
Eco57I CTGAAG 5 cut(s) 714, 943, 1011, 3500, 3529
Eco81I CCTNAGG 1 cut(s) 1698
Eco88I CYCGRG 1 cut(s) 3985
EcoICRI GAGCTC 3 cut(s) 122, 3421, 3512
EcoNI CCTNNNNNAGG 1 cut(s) 3945
EcoO109I RGGNCCY 2 cut(s) 194, 3481
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 4 cut(s) 291, 1053, 1708, 2725
EcoRV GATATC 1 cut(s) 2131
EcoT14I CCWWGG 7 cut(s) 8, 189, 633, 871, 1531, 3288, 3941
EcoT38I GRGCYC 3 cut(s) 124, 3423, 3514
EgeI GGCGCC 3 cut(s) 14, 1782, 3714
EheI GGCGCC 3 cut(s) 14, 1782, 3714
ErhI CCWWGG 7 cut(s) 8, 189, 633, 871, 1531, 3288, 3941
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 2357, 2389
FaqI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1988, 3019, 3290, 3494
FauI CCCGC 4 cut(s) 1080, 2062, 2904, 4239
FauNDI CATATG 1 cut(s) 3094
FbaI TGATCA 1 cut(s) 1897
FriOI GRGCYC 3 cut(s) 124, 3423, 3514
GlaI GCGC 6 cut(s) 14, 348, 1123, 1782, 2258, 3714
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2564, 4038
HaeII RGCGCY 4 cut(s) 16, 1784, 2260, 3716
HaeIII GGCC 7 cut(s) 638, 670, 2890, 3154, 3218, 3792, 3999
HapII CCGG 8 cut(s) 843, 1227, 1323, 1685, 1758, 2402, 3107, 4181
HgaI GACGC 1 cut(s) 626
HhaI GCGC 6 cut(s) 15, 349, 1124, 1783, 2259, 3715
Hin1I GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
Hin6I GCGC 6 cut(s) 13, 347, 1122, 1781, 2257, 3713
HinP1I GCGC 6 cut(s) 13, 347, 1122, 1781, 2257, 3713
HincII GTYRAC 1 cut(s) 2304
HindII GTYRAC 1 cut(s) 2304
HindIII AAGCTT 2 cut(s) 234, 3977
HpaII CCGG 8 cut(s) 843, 1227, 1323, 1685, 1758, 2402, 3107, 4181
HphI GGTGA 8 cut(s) 283, 1337, 1342, 2038, 3277, 3352, 3355, 3926
Hpy166II GTNNAC 5 cut(s) 220, 1106, 2140, 2304, 2646
Hpy8I GTNNAC 5 cut(s) 220, 1106, 2140, 2304, 2646
HpyAV CCTTC 8 cut(s) 50, 262, 455, 786, 1370, 3130, 3243, 4128
HpyCH4III ACNGT 5 cut(s) 369, 1855, 2212, 2922, 3335
HpyCH4IV ACGT 4 cut(s) 799, 1108, 1184, 2446
HpySE526I ACGT 4 cut(s) 799, 1108, 1184, 2446
Hsp92I GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3713
HspAI GCGC 6 cut(s) 13, 347, 1122, 1781, 2257, 3713
KasI GGCGCC 3 cut(s) 12, 1780, 3712
KflI GGGWCCC 2 cut(s) 194, 3481
Kpn2I TCCGGA 2 cut(s) 1684, 2401
KpnI GGTACC 1 cut(s) 3534
Ksp22I TGATCA 1 cut(s) 1897
KspI CCGCGG 1 cut(s) 2058
LguI GCTCTTC 1 cut(s) 3519
LweI GCATC 7 cut(s) 193, 334, 2019, 2425, 2457, 2740, 4290
MaeII ACGT 4 cut(s) 799, 1108, 1184, 2446
MaeIII GTNAC 7 cut(s) 283, 800, 1849, 1956, 1998, 2212, 3808
MfeI CAATTG 2 cut(s) 1826, 2504
MflI RGATCY 4 cut(s) 1962, 2068, 2164, 3895
MhlI GDGCHC 8 cut(s) 124, 248, 562, 667, 1054, 2386, 3423, 3514
MlsI TGGCCA 2 cut(s) 638, 3154
MluNI TGGCCA 2 cut(s) 638, 3154
Mly113I GGCGCC 3 cut(s) 13, 1781, 3713
MlyI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2638, 3001, 3351, 3837
MmeI TCCRAC 1 cut(s) 3740
Mox20I TGGCCA 2 cut(s) 638, 3154
MroI TCCGGA 2 cut(s) 1684, 2401
MroXI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4182
MscI TGGCCA 2 cut(s) 638, 3154
MslI CAYNNNNRTG 5 cut(s) 1272, 2210, 3119, 3287, 3707
Msp20I TGGCCA 2 cut(s) 638, 3154
MspA1I CMGCKG 7 cut(s) 743, 1031, 1087, 1571, 1802, 2057, 2555
MspI CCGG 8 cut(s) 843, 1227, 1323, 1685, 1758, 2402, 3107, 4181
MspR9I CCNGG 8 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2727, 3108
MunI CAATTG 2 cut(s) 1826, 2504
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 4 cut(s) 293, 1055, 1710, 2727
MvnI CGCG 3 cut(s) 620, 1122, 2057
NarI GGCGCC 3 cut(s) 13, 1781, 3713
NciI CCSGG 4 cut(s) 844, 1227, 1758, 3108
NcoI CCATGG 3 cut(s) 633, 871, 3288
NdeI CATATG 1 cut(s) 3094
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 4 cut(s) 800, 1849, 1998, 2212
NspI RCATGY 2 cut(s) 1136, 1310
NspV TTCGAA 2 cut(s) 1501, 2963
OliI CACNNNNGTG 1 cut(s) 2210
PaeI GCATGC 1 cut(s) 1136
PagI TCATGA 3 cut(s) 949, 2073, 2536
PasI CCCWGGG 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 3519
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3484
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4182
PfeI GAWTC 8 cut(s) 299, 486, 1843, 2221, 2930, 3461, 4189, 4283
PflFI GACNNNGTC 1 cut(s) 2448
PflMI CCANNNNNTGG 1 cut(s) 2176
PfoI TCCNGGA 4 cut(s) 291, 1225, 1756, 2725
PinAI ACCGGT 1 cut(s) 4180
PleI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2637, 3001, 3351, 3837
PluTI GGCGCC 3 cut(s) 16, 1784, 3716
PpsI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2637, 3001, 3351, 3837
PpuMI RGGWCCY 2 cut(s) 194, 3481
Psp124BI GAGCTC 3 cut(s) 124, 3423, 3514
Psp5II RGGWCCY 2 cut(s) 194, 3481
Psp6I CCWGG 4 cut(s) 291, 1053, 1708, 2725
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 4 cut(s) 291, 1053, 1708, 2725
PspPI GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3277, 3481, 3791, 3998
PspPPI RGGWCCY 2 cut(s) 194, 3481
PsuI RGATCY 4 cut(s) 1962, 2068, 2164, 3895
PsyI GACNNNGTC 1 cut(s) 2448
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 4 cut(s) 1159, 1183, 3316, 3532
RsaNI GTAC 4 cut(s) 1158, 1182, 3315, 3531
RseI CAYNNNNRTG 5 cut(s) 1272, 2210, 3119, 3287, 3707
SacI GAGCTC 3 cut(s) 124, 3423, 3514
SacII CCGCGG 1 cut(s) 2058
SapI GCTCTTC 1 cut(s) 3519
Sau96I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3277, 3481, 3791, 3998
SchI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2638, 3001, 3351, 3837
ScrFI CCNGG 8 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2727, 3108
SduI GDGCHC 8 cut(s) 124, 248, 562, 667, 1054, 2386, 3423, 3514
SfaNI GCATC 7 cut(s) 193, 334, 2019, 2425, 2457, 2740, 4290
SfcI CTRYAG 3 cut(s) 1668, 1743, 2829
SfoI GGCGCC 3 cut(s) 14, 1782, 3714
Sfr303I CCGCGG 1 cut(s) 2058
SfuI TTCGAA 2 cut(s) 1501, 2963
SgrBI CCGCGG 1 cut(s) 2058
SinI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3277, 3481
SmiMI CAYNNNNRTG 5 cut(s) 1272, 2210, 3119, 3287, 3707
SmlI CTYRAG 4 cut(s) 2143, 2570, 3245, 3845
SmoI CTYRAG 4 cut(s) 2143, 2570, 3245, 3845
SphI GCATGC 1 cut(s) 1136
SspDI GGCGCC 3 cut(s) 12, 1780, 3712
SspI AATATT 1 cut(s) 395
SstI GAGCTC 3 cut(s) 124, 3423, 3514
StyD4I CCNGG 8 cut(s) 291, 842, 1053, 1225, 1708, 1756, 2725, 3106
StyI CCWWGG 7 cut(s) 8, 189, 633, 871, 1531, 3288, 3941
TaaI ACNGT 5 cut(s) 369, 1855, 2212, 2922, 3335
TaiI ACGT 4 cut(s) 802, 1111, 1187, 2449
TaqII GACCGA 3 cut(s) 1057, 1986, 4212
TauI GCSGC 3 cut(s) 2060, 2515, 2975
TfiI GAWTC 8 cut(s) 299, 486, 1843, 2221, 2930, 3461, 4189, 4283
TseFI GTSAC 4 cut(s) 800, 1849, 1998, 2212
Tsp45I GTSAC 4 cut(s) 800, 1849, 1998, 2212
TspGWI ACGGA 5 cut(s) 1860, 1975, 2231, 3875, 4302
Tth111I GACNNNGTC 1 cut(s) 2448
Van91I CCANNNNNTGG 1 cut(s) 2176
VpaK11BI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3277, 3481
XagI CCTNNNNNAGG 1 cut(s) 3945
XapI RAATTY 5 cut(s) 420, 2018, 3500, 3671, 3902
XbaI TCTAGA 1 cut(s) 2441
XceI RCATGY 2 cut(s) 1136, 1310
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 3270
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4182
ZraI GACGTC 2 cut(s) 800, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.