FvH4_5g38072

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Reverse (-)
28125000 .. 28128454
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38072.t1

Sequence Viewer

Length: 2523 bp
ATGACTCGCGCTAGACTACATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTATGTTGTTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTCCGATCACGTTATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACCTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAGAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCCCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGTCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTAAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAGAACCTATCTTTGATGGAATTTGCCTATAACAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCCAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAGGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

841

Amino Acids

96.12

Weight (kDa)

8.87

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 2 - 77 3.1e-13 Retroviral aspartyl protease
RVT_1 PF00078 169 - 329 3.8e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 392 - 471 4.3e-25 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 418 - 471 2.6e-12 RNase H-like domain found in reverse transcriptase
SH3_Tf2-1 PF24626 703 - 767 3e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2392
Acc36I ACCTGC 2 cut(s) 1079, 2392
Acc65I GGTACC 1 cut(s) 1724
AccB1I GGYRCC 5 cut(s) 388, 521, 623, 1724, 1906
AccB7I CCANNNNNTGG 1 cut(s) 1021
AccII CGCG 2 cut(s) 9, 770
AccIII TCCGGA 2 cut(s) 292, 1246
AciI CCGC 8 cut(s) 410, 673, 768, 770, 901, 1610, 2072, 2426
AclWI GGATC 8 cut(s) 104, 602, 670, 683, 789, 1004, 1017, 2303
AcsI RAATTY 4 cut(s) 731, 1694, 1865, 2096
AcuI CTGAAG 2 cut(s) 1694, 1723
AcyI GRCGYC 2 cut(s) 389, 1907
AfaI GTAC 3 cut(s) 46, 1510, 1726
AfiI CCNNNNNNNGG 6 cut(s) 37, 1021, 1158, 1237, 1518, 2141
AgeI ACCGGT 1 cut(s) 2374
AgsI TTSAA 9 cut(s) 418, 427, 1122, 1172, 1202, 1210, 1354, 2096, 2102
AjiI CACGTC 1 cut(s) 1292
AjnI CCWGG 2 cut(s) 316, 2258
AjuI GAANNNNNNNTTGG 4 cut(s) 689, 721, 1580, 1612
AleI CACNNNNGTG 1 cut(s) 1055
Alw21I GWGCWC 3 cut(s) 493, 1617, 1708
Alw26I GTCTC 4 cut(s) 180, 204, 483, 523
AlwI GGATC 8 cut(s) 104, 602, 670, 683, 789, 1004, 1017, 2303
Ama87I CYCGRG 1 cut(s) 2179
Aor13HI TCCGGA 2 cut(s) 292, 1246
AoxI GGCC 4 cut(s) 467, 1410, 1984, 2191
ApeKI GCWGC 5 cut(s) 1315, 1397, 1715, 2323, 2497
ApoI RAATTY 4 cut(s) 731, 1694, 1865, 2096
ArsI GACNNNNNNTTYG 4 cut(s) 1667, 1699, 2338, 2370
AsiGI ACCGGT 1 cut(s) 2374
Asp700I GAANNNNTTC 3 cut(s) 270, 360, 2376
Asp718I GGTACC 1 cut(s) 1724
AspLEI GCGC 5 cut(s) 11, 391, 1104, 1402, 1909
AspS9I GGNCC 5 cut(s) 903, 1471, 1675, 1985, 2192
AsuC2I CCSGG 2 cut(s) 114, 366
AsuHPI GGTGA 7 cut(s) 224, 698, 751, 1471, 1546, 1549, 2120
AvaI CYCGRG 1 cut(s) 2179
AvaII GGWCC 3 cut(s) 903, 1471, 1675
AxyI CCTNAGG 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 1231
BamHI GGATCC 2 cut(s) 675, 1009
BanI GGYRCC 5 cut(s) 388, 521, 623, 1724, 1906
BanII GRGCYC 2 cut(s) 1617, 1708
BarI GAAGNNNNNNTAC 2 cut(s) 2274, 2306
BbsI GAAGAC 2 cut(s) 434, 1051
Bbv12I GWGCWC 3 cut(s) 493, 1617, 1708
BbvI GCAGC 5 cut(s) 1327, 1409, 1727, 2310, 2509
BccI CCATC 5 cut(s) 175, 512, 1511, 1760, 1855
BceAI ACGGC 1 cut(s) 1429
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 1304, 1338
BciT130I CCWGG 2 cut(s) 318, 2260
BciVI GTATCC 4 cut(s) 232, 2256, 2293, 2514
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 2 cut(s) 114, 366
BcoDI GTCTC 4 cut(s) 180, 204, 483, 523
BfaI CTAG 9 cut(s) 12, 138, 182, 224, 471, 1287, 1298, 1344, 1893
BfmI CTRYAG 2 cut(s) 276, 351
BfoI RGCGCY 3 cut(s) 392, 1105, 1910
BfuAI ACCTGC 2 cut(s) 1079, 2392
BfuI GTATCC 4 cut(s) 232, 2256, 2293, 2514
BglII AGATCT 1 cut(s) 2089
BisI GCNGC 6 cut(s) 771, 1316, 1398, 1716, 2324, 2498
BlpI GCTNAGC 1 cut(s) 2174
BlsI GCNGC 6 cut(s) 772, 1317, 1399, 1717, 2325, 2499
Bme1390I CCNGG 4 cut(s) 114, 318, 366, 2260
Bme18I GGWCC 3 cut(s) 903, 1471, 1675
BmeT110I CYCGRG 1 cut(s) 2179
BmgBI CACGTC 1 cut(s) 1292
BmgT120I GGNCC 5 cut(s) 903, 1471, 1675, 1985, 2192
BmrFI CCNGG 4 cut(s) 114, 318, 366, 2260
BmsI GCATC 5 cut(s) 732, 892, 1270, 1302, 2484
BpiI GAAGAC 2 cut(s) 434, 1051
BplI GAGNNNNNCTC 2 cut(s) 2022, 2054
BpmI CTGGAG 4 cut(s) 36, 390, 1409, 2232
Bpu10I CCTNAGC 1 cut(s) 2408
Bpu1102I GCTNAGC 1 cut(s) 2174
BpuEI CTTGAG 3 cut(s) 841, 1460, 2024
BpuMI CCSGG 2 cut(s) 114, 366
Bsa29I ATCGAT 2 cut(s) 597, 2233
BsaHI GRCGYC 2 cut(s) 389, 1907
BsaJI CCNNGG 7 cut(s) 482, 590, 768, 906, 1482, 2135, 2180
BsaWI WCCGGW 5 cut(s) 209, 292, 493, 1246, 2374
BsaXI ACNNNNNCTCC 8 cut(s) 990, 1020, 1251, 1281, 1790, 1820, 1921, 1951
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 1021, 1158, 1237, 1518, 2141
Bse118I RCCGGY 1 cut(s) 2374
Bse1I ACTGG 2 cut(s) 1457, 1577
Bse21I CCTNAGG 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 292, 1246
BseBI CCWGG 2 cut(s) 318, 2260
BseCI ATCGAT 2 cut(s) 597, 2233
BseDI CCNNGG 7 cut(s) 482, 590, 768, 906, 1482, 2135, 2180
BseGI GGATG 5 cut(s) 167, 301, 1255, 1753, 2080
BseLI CCNNNNNNNGG 6 cut(s) 37, 1021, 1158, 1237, 1518, 2141
BseMII CTCAG 4 cut(s) 297, 398, 1772, 2063
BseNI ACTGG 2 cut(s) 1457, 1577
BseRI GAGGAG 3 cut(s) 323, 1125, 2498
BseSI GKGCMC 1 cut(s) 1231
BseXI GCAGC 5 cut(s) 1327, 1409, 1727, 2310, 2509
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 1548
Bsh1236I CGCG 2 cut(s) 9, 770
Bsh1285I CGRYCG 1 cut(s) 2392
BshFI GGCC 4 cut(s) 469, 1412, 1986, 2193
BshNI GGYRCC 5 cut(s) 388, 521, 623, 1724, 1906
BshTI ACCGGT 1 cut(s) 2374
BshVI ATCGAT 2 cut(s) 597, 2233
BsiEI CGRYCG 1 cut(s) 2392
BsiHKAI GWGCWC 3 cut(s) 493, 1617, 1708
BsiHKCI CYCGRG 1 cut(s) 2179
BsiSI CCGG 7 cut(s) 114, 210, 293, 366, 494, 1247, 2375
BslFI GGGAC 2 cut(s) 1484, 1688
BslI CCNNNNNNNGG 6 cut(s) 37, 1021, 1158, 1237, 1518, 2141
BsmAI GTCTC 4 cut(s) 180, 204, 483, 523
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 1484, 1688
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 4 cut(s) 469, 1412, 1986, 2193
BsoBI CYCGRG 1 cut(s) 2179
Bsp1286I GDGCHC 4 cut(s) 493, 1231, 1617, 1708
Bsp13I TCCGGA 2 cut(s) 292, 1246
Bsp1720I GCTNAGC 1 cut(s) 2174
Bsp19I CCATGG 2 cut(s) 482, 1482
BspACI CCGC 8 cut(s) 410, 673, 768, 770, 901, 1610, 2072, 2426
BspANI GGCC 4 cut(s) 469, 1412, 1986, 2193
BspCNI CTCAG 4 cut(s) 298, 397, 1771, 2062
BspDI ATCGAT 2 cut(s) 597, 2233
BspEI TCCGGA 2 cut(s) 292, 1246
BspFNI CGCG 2 cut(s) 9, 770
BspHI TCATGA 2 cut(s) 786, 1381
BspMI ACCTGC 2 cut(s) 1079, 2392
BspPI GGATC 8 cut(s) 104, 602, 670, 683, 789, 1004, 1017, 2303
BspQI GCTCTTC 1 cut(s) 1713
BspT107I GGYRCC 5 cut(s) 388, 521, 623, 1724, 1906
BsrFI RCCGGY 1 cut(s) 2374
BsrI ACTGG 2 cut(s) 1457, 1577
BssAI RCCGGY 1 cut(s) 2374
BssECI CCNNGG 7 cut(s) 482, 590, 768, 906, 1482, 2135, 2180
BssNI GRCGYC 2 cut(s) 389, 1907
BssT1I CCWWGG 4 cut(s) 482, 906, 1482, 2135
Bst2UI CCWGG 2 cut(s) 318, 2260
Bst4CI ACNGT 3 cut(s) 568, 1057, 1529
Bst6I CTCTTC 5 cut(s) 183, 1713, 1742, 2361, 2519
BstACI GRCGYC 2 cut(s) 389, 1907
BstAPI GCANNNNNTGC 1 cut(s) 2494
BstC8I GCNNGC 5 cut(s) 93, 876, 1190, 1395, 1943
BstDEI CTNAG 8 cut(s) 306, 384, 887, 930, 1758, 2049, 2174, 2408
BstDSI CCRYGG 3 cut(s) 482, 768, 1482
BstENI CCTNNNNNAGG 1 cut(s) 2139
BstF5I GGATG 5 cut(s) 167, 301, 1255, 1753, 2080
BstFNI CGCG 2 cut(s) 9, 770
BstH2I RGCGCY 3 cut(s) 392, 1105, 1910
BstHHI GCGC 5 cut(s) 11, 391, 1104, 1402, 1909
BstMAI GTCTC 4 cut(s) 180, 204, 483, 523
BstMCI CGRYCG 1 cut(s) 2392
BstNI CCWGG 2 cut(s) 318, 2260
BstNSI RCATGY 4 cut(s) 23, 197, 478, 878
BstSCI CCNGG 4 cut(s) 112, 316, 364, 2258
BstSFI CTRYAG 2 cut(s) 276, 351
BstSLI GKGCMC 1 cut(s) 1231
BstUI CGCG 2 cut(s) 9, 770
BstV1I GCAGC 5 cut(s) 1327, 1409, 1727, 2310, 2509
BstV2I GAAGAC 2 cut(s) 434, 1051
BstX2I RGATCY 4 cut(s) 675, 781, 1009, 2089
BstYI RGATCY 4 cut(s) 675, 781, 1009, 2089
Bsu15I ATCGAT 2 cut(s) 597, 2233
Bsu36I CCTNAGG 1 cut(s) 306
BsuI GTATCC 4 cut(s) 232, 2256, 2293, 2514
BsuRI GGCC 4 cut(s) 469, 1412, 1986, 2193
BsuTUI ATCGAT 2 cut(s) 597, 2233
BtgI CCRYGG 3 cut(s) 482, 768, 1482
BtrI CACGTC 1 cut(s) 1292
BtsCI GGATG 5 cut(s) 167, 301, 1255, 1753, 2080
BtsI GCAGTG 3 cut(s) 1035, 1743, 1940
BtsIMutI CAGTG 8 cut(s) 573, 1035, 1053, 1190, 1464, 1584, 1743, 1940
BveI ACCTGC 2 cut(s) 1079, 2392
Cac8I GCNNGC 5 cut(s) 93, 876, 1190, 1395, 1943
CciI TCATGA 2 cut(s) 786, 1381
CfoI GCGC 5 cut(s) 11, 391, 1104, 1402, 1909
Cfr10I RCCGGY 1 cut(s) 2374
Cfr13I GGNCC 5 cut(s) 903, 1471, 1675, 1985, 2192
Cfr42I CCGCGG 1 cut(s) 771
ClaI ATCGAT 2 cut(s) 597, 2233
Csp6I GTAC 3 cut(s) 45, 1509, 1725
CspAI ACCGGT 1 cut(s) 2374
CviQI GTAC 3 cut(s) 45, 1509, 1725
DdeI CTNAG 8 cut(s) 306, 384, 887, 930, 1758, 2049, 2174, 2408
DinI GGCGCC 2 cut(s) 390, 1908
Eam1104I CTCTTC 5 cut(s) 183, 1713, 1742, 2361, 2519
EarI CTCTTC 5 cut(s) 183, 1713, 1742, 2361, 2519
EciI GGCGGA 1 cut(s) 1625
Ecl136II GAGCTC 2 cut(s) 1615, 1706
Eco130I CCWWGG 4 cut(s) 482, 906, 1482, 2135
Eco24I GRGCYC 2 cut(s) 1617, 1708
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 3 cut(s) 903, 1471, 1675
Eco53kI GAGCTC 2 cut(s) 1615, 1706
Eco57I CTGAAG 2 cut(s) 1694, 1723
Eco81I CCTNAGG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 2179
EcoICRI GAGCTC 2 cut(s) 1615, 1706
EcoNI CCTNNNNNAGG 1 cut(s) 2139
EcoO109I RGGNCCY 1 cut(s) 1675
EcoRII CCWGG 2 cut(s) 316, 2258
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 4 cut(s) 482, 906, 1482, 2135
EcoT22I ATGCAT 1 cut(s) 539
EcoT38I GRGCYC 2 cut(s) 1617, 1708
EgeI GGCGCC 2 cut(s) 390, 1908
EheI GGCGCC 2 cut(s) 390, 1908
ErhI CCWWGG 4 cut(s) 482, 906, 1482, 2135
Esp3I CGTCTC 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 1202, 1234
FaqI GGGAC 2 cut(s) 1484, 1688
FauI CCCGC 2 cut(s) 775, 2433
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 6 cut(s) 771, 1316, 1398, 1716, 2324, 2498
FokI GGATG 5 cut(s) 154, 308, 1262, 1740, 2087
FriOI GRGCYC 2 cut(s) 1617, 1708
Fsp4HI GCNGC 6 cut(s) 771, 1316, 1398, 1716, 2324, 2498
FspBI CTAG 9 cut(s) 12, 138, 182, 224, 471, 1287, 1298, 1344, 1893
GlaI GCGC 5 cut(s) 10, 390, 1103, 1401, 1908
GluI GCNGC 6 cut(s) 771, 1316, 1398, 1716, 2324, 2498
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 4 cut(s) 36, 390, 1409, 2232
HaeII RGCGCY 3 cut(s) 392, 1105, 1910
HaeIII GGCC 4 cut(s) 469, 1412, 1986, 2193
HapII CCGG 7 cut(s) 114, 210, 293, 366, 494, 1247, 2375
HhaI GCGC 5 cut(s) 11, 391, 1104, 1402, 1909
Hin1I GRCGYC 2 cut(s) 389, 1907
Hin6I GCGC 5 cut(s) 9, 389, 1102, 1400, 1907
HinP1I GCGC 5 cut(s) 9, 389, 1102, 1400, 1907
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HindIII AAGCTT 1 cut(s) 2171
HinfI GANTC 9 cut(s) 4, 430, 556, 1066, 1551, 1655, 2037, 2383, 2477
HpaII CCGG 7 cut(s) 114, 210, 293, 366, 494, 1247, 2375
HphI GGTGA 7 cut(s) 224, 698, 751, 1471, 1546, 1549, 2120
Hpy166II GTNNAC 2 cut(s) 853, 1149
Hpy8I GTNNAC 2 cut(s) 853, 1149
HpyAV CCTTC 3 cut(s) 989, 1437, 2322
HpyCH4III ACNGT 3 cut(s) 568, 1057, 1529
HpyCH4IV ACGT 2 cut(s) 715, 1291
HpyF3I CTNAG 8 cut(s) 306, 384, 887, 930, 1758, 2049, 2174, 2408
HpySE526I ACGT 2 cut(s) 715, 1291
Hsp92I GRCGYC 2 cut(s) 389, 1907
HspAI GCGC 5 cut(s) 9, 389, 1102, 1400, 1907
KasI GGCGCC 2 cut(s) 388, 1906
KflI GGGWCCC 1 cut(s) 1675
Kpn2I TCCGGA 2 cut(s) 292, 1246
KpnI GGTACC 1 cut(s) 1728
Ksp22I TGATCA 1 cut(s) 610
KspI CCGCGG 1 cut(s) 771
LguI GCTCTTC 1 cut(s) 1713
LmnI GCTCC 8 cut(s) 116, 409, 496, 1390, 1612, 1703, 2398, 2485
Lsp1109I GCAGC 5 cut(s) 1327, 1409, 1727, 2310, 2509
LweI GCATC 5 cut(s) 732, 892, 1270, 1302, 2484
MaeI CTAG 9 cut(s) 12, 138, 182, 224, 471, 1287, 1298, 1344, 1893
MaeII ACGT 2 cut(s) 715, 1291
MaeIII GTNAC 4 cut(s) 562, 686, 1057, 2002
MfeI CAATTG 2 cut(s) 434, 1349
MflI RGATCY 4 cut(s) 675, 781, 1009, 2089
MhlI GDGCHC 4 cut(s) 493, 1231, 1617, 1708
Mly113I GGCGCC 2 cut(s) 389, 1907
MlyI GAGTC 3 cut(s) 424, 1545, 2031
MmeI TCCRAC 1 cut(s) 1934
Mph1103I ATGCAT 1 cut(s) 539
MroI TCCGGA 2 cut(s) 292, 1246
MroXI GAANNNNTTC 3 cut(s) 270, 360, 2376
MseI TTAA 7 cut(s) 77, 104, 507, 1164, 1808, 1994, 2019
MslI CAYNNNNRTG 5 cut(s) 68, 159, 1055, 1481, 1901
MspA1I CMGCKG 2 cut(s) 410, 770
MspI CCGG 7 cut(s) 114, 210, 293, 366, 494, 1247, 2375
MspR9I CCNGG 4 cut(s) 114, 318, 366, 2260
MunI CAATTG 2 cut(s) 434, 1349
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 318, 2260
MvnI CGCG 2 cut(s) 9, 770
NarI GGCGCC 2 cut(s) 389, 1907
NciI CCSGG 2 cut(s) 114, 366
NcoI CCATGG 2 cut(s) 482, 1482
NmuCI GTSAC 3 cut(s) 562, 686, 1057
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 4 cut(s) 23, 197, 478, 878
OliI CACNNNNGTG 1 cut(s) 1055
PaeI GCATGC 1 cut(s) 878
PagI TCATGA 2 cut(s) 786, 1381
PaqCI CACCTGC 1 cut(s) 2392
PciSI GCTCTTC 1 cut(s) 1713
PcsI WCGNNNNNNNCGW 1 cut(s) 1678
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 3 cut(s) 270, 360, 2376
PfeI GAWTC 5 cut(s) 556, 1066, 1655, 2383, 2477
PflFI GACNNNGTC 1 cut(s) 1293
PflMI CCANNNNNTGG 1 cut(s) 1021
PfoI TCCNGGA 2 cut(s) 112, 364
PinAI ACCGGT 1 cut(s) 2374
PkrI GCNGC 6 cut(s) 772, 1317, 1399, 1717, 2325, 2499
PleI GAGTC 3 cut(s) 424, 1545, 2031
PluTI GGCGCC 2 cut(s) 392, 1910
PpsI GAGTC 3 cut(s) 424, 1545, 2031
PpuMI RGGWCCY 1 cut(s) 1675
Psp124BI GAGCTC 2 cut(s) 1617, 1708
Psp5II RGGWCCY 1 cut(s) 1675
Psp6I CCWGG 2 cut(s) 316, 2258
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 2 cut(s) 316, 2258
PspPI GGNCC 5 cut(s) 903, 1471, 1675, 1985, 2192
PspPPI RGGWCCY 1 cut(s) 1675
PsuI RGATCY 4 cut(s) 675, 781, 1009, 2089
PsyI GACNNNGTC 1 cut(s) 1293
RsaI GTAC 3 cut(s) 46, 1510, 1726
RsaNI GTAC 3 cut(s) 45, 1509, 1725
RseI CAYNNNNRTG 5 cut(s) 68, 159, 1055, 1481, 1901
SacI GAGCTC 2 cut(s) 1617, 1708
SacII CCGCGG 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 1713
SaqAI TTAA 7 cut(s) 77, 104, 507, 1164, 1808, 1994, 2019
SatI GCNGC 6 cut(s) 771, 1316, 1398, 1716, 2324, 2498
Sau96I GGNCC 5 cut(s) 903, 1471, 1675, 1985, 2192
SchI GAGTC 3 cut(s) 424, 1545, 2031
ScrFI CCNGG 4 cut(s) 114, 318, 366, 2260
SduI GDGCHC 4 cut(s) 493, 1231, 1617, 1708
SfaNI GCATC 5 cut(s) 732, 892, 1270, 1302, 2484
SfcI CTRYAG 2 cut(s) 276, 351
SfoI GGCGCC 2 cut(s) 390, 1908
Sfr303I CCGCGG 1 cut(s) 771
SgrBI CCGCGG 1 cut(s) 771
SinI GGWCC 3 cut(s) 903, 1471, 1675
SmiMI CAYNNNNRTG 5 cut(s) 68, 159, 1055, 1481, 1901
SmlI CTYRAG 3 cut(s) 856, 1439, 2039
SmoI CTYRAG 3 cut(s) 856, 1439, 2039
SphI GCATGC 1 cut(s) 878
SsiI CCGC 8 cut(s) 410, 673, 768, 770, 901, 1610, 2072, 2426
SspDI GGCGCC 2 cut(s) 388, 1906
SspI AATATT 1 cut(s) 897
SspMI CTAG 9 cut(s) 12, 138, 182, 224, 471, 1287, 1298, 1344, 1893
SstI GAGCTC 2 cut(s) 1617, 1708
StyD4I CCNGG 4 cut(s) 112, 316, 364, 2258
StyI CCWWGG 4 cut(s) 482, 906, 1482, 2135
TaaI ACNGT 3 cut(s) 568, 1057, 1529
TaiI ACGT 2 cut(s) 718, 1294
TaqI TCGA 6 cut(s) 597, 1034, 1324, 1681, 2233, 2388
TaqII GACCGA 1 cut(s) 2406
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 5 cut(s) 556, 1066, 1655, 2383, 2477
Tru1I TTAA 7 cut(s) 77, 104, 507, 1164, 1808, 1994, 2019
Tru9I TTAA 7 cut(s) 77, 104, 507, 1164, 1808, 1994, 2019
TscAI CASTG 8 cut(s) 573, 1035, 1060, 1190, 1464, 1584, 1750, 1940
TseFI GTSAC 3 cut(s) 562, 686, 1057
TseI GCWGC 5 cut(s) 1315, 1397, 1715, 2323, 2497
Tsp45I GTSAC 3 cut(s) 562, 686, 1057
TspGWI ACGGA 4 cut(s) 573, 1076, 2069, 2496
TspRI CASTG 8 cut(s) 573, 1035, 1060, 1190, 1464, 1584, 1750, 1940
Tth111I GACNNNGTC 1 cut(s) 1293
Van91I CCANNNNNTGG 1 cut(s) 1021
VpaK11BI GGWCC 3 cut(s) 903, 1471, 1675
XagI CCTNNNNNAGG 1 cut(s) 2139
XapI RAATTY 4 cut(s) 731, 1694, 1865, 2096
XbaI TCTAGA 1 cut(s) 1286
XceI RCATGY 4 cut(s) 23, 197, 478, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 1464
XmnI GAANNNNTTC 3 cut(s) 270, 360, 2376
XspI CTAG 9 cut(s) 12, 138, 182, 224, 471, 1287, 1298, 1344, 1893
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.