Rw2G006480

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000094
Physical Location & Seq
Forward (+)
6241769 .. 6242915
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006480.1

Sequence Viewer

Length: 876 bp
ATGACCTGGGATATGTTCAAGACCCACTTCTATGGACGGTACTTTAGTGATGCCCACCTTAATCGGATGCAAGACCAGTTCTTGAGCTTAGTGAAGAGAGATGATCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCCTTAGCTCACCATGTGCCGGATTTGGTTCGCACCGAGCAAAGCAAGATTCGTAGATTTGTTTTGGGACTTGGAGGCAAGTTCAAGGACAAGATGTTAGGCACACCGTATCGGAGCTTTGCTGAGGCAGTATCTTATGCCATGGACATTGAGTCTGACTCACCTGCTGGATTTCACCCTAGGGATCCTGGTGGCCCTAGCCAGGGTCCATCTAAGAGGGCTACTTCCACATCTGGTTCGGGTTCTTCAGTTGGTAGTGGGAAGAACAGTGGTTCCAGTTCGAGGACCCGTACTAGGTTCAGGGTACGTGACAGGAGATTCTCTCGGGGTCAGTCTAGTGGACGACAGTTTGGACAGTTTGAGAGGTCCAGGAGTTATCATGGTGGTTCGAGTGGGGCTTCTGCTAGCCAGCCAGCCCAGTTTGGACAGTATCAGACAGCAGGATGTTTTATTTGTGGTCAGCAGGATCACTTCAGGAGGGACTGTCCCCTTGCGACTCAGGGAGCTAGATCTACCCCCACTCAGACTGTTGGTCAGTCCTCTGCTGGTGGTTCTACTAGCAGCGCCCGCACCAGGTCGGTAGGCCGAGCTAGTTCTCAGCAGGGCAGGGCTCAGCGAGGTCGTCCTGTGACACATGCTAGACTGCACGCCATGACCCAGCAGGAGGGCCGGGATTCACCGAAAGTTATCGTTGGTACACACATGGTGCATTGGTTGATTGGTTTCGTAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
HJURP_C SRF-TF

Protein Analysis

291

Amino Acids

32.05

Weight (kDa)

10.75

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 2 - 70 8.4e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
AciI CCGC 1 cut(s) 706
AclWI GGATC 3 cut(s) 317, 330, 612
AcuI CTGAAG 2 cut(s) 369, 595
AdeI CACNNNGTG 2 cut(s) 154, 844
AfaI GTAC 4 cut(s) 41, 430, 444, 835
AfiI CCNNNNNNNGG 7 cut(s) 157, 340, 341, 420, 432, 711, 802
AgsI TTSAA 2 cut(s) 19, 223
AhdI GACNNNNNGTC 2 cut(s) 289, 669
AjnI CCWGG 5 cut(s) 5, 325, 339, 506, 710
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
AluBI AGCT 5 cut(s) 87, 146, 255, 644, 728
AluI AGCT 5 cut(s) 87, 146, 255, 644, 728
AlwI GGATC 3 cut(s) 317, 330, 612
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 3 cut(s) 331, 721, 805
ApeKI GCWGC 1 cut(s) 699
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 5 cut(s) 332, 344, 423, 504, 805
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 4 cut(s) 140, 291, 305, 807
AsuNHI GCTAGC 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 3 cut(s) 344, 423, 504
AvrII CCTAGG 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 751
BbvCI CCTCAGC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 711
BccI CCATC 1 cut(s) 355
BciT130I CCWGG 5 cut(s) 7, 327, 341, 508, 712
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 809
BfaI CTAG 9 cut(s) 318, 336, 432, 474, 543, 645, 696, 729, 777
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 310
BglII AGATCT 1 cut(s) 647
BisI GCNGC 1 cut(s) 700
BlnI CCTAGG 1 cut(s) 317
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 701
Bme1390I CCNGG 6 cut(s) 7, 327, 341, 508, 712, 809
Bme18I GGWCC 3 cut(s) 344, 423, 504
BmeRI GACNNNNNGTC 2 cut(s) 289, 669
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 5 cut(s) 332, 344, 423, 504, 805
BmiI GGNNCC 4 cut(s) 324, 345, 412, 425
BmrFI CCNGG 6 cut(s) 7, 327, 341, 508, 712, 809
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 2 cut(s) 40, 57
BmtI GCTAGC 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 550
BplI GAGNNNNNCTC 6 cut(s) 122, 154, 281, 313, 445, 477
Bpu10I CCTNAGC 2 cut(s) 142, 261
Bpu1102I GCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 809
BsaAI YACGTR 1 cut(s) 446
BsaJI CCNNGG 4 cut(s) 6, 279, 317, 340
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 340, 341, 420, 432, 711, 802
Bse1I ACTGG 3 cut(s) 76, 414, 556
BseBI CCWGG 5 cut(s) 7, 327, 341, 508, 712
BseDI CCNNGG 4 cut(s) 6, 279, 317, 340
BseGI GGATG 2 cut(s) 72, 587
BseLI CCNNNNNNNGG 7 cut(s) 157, 340, 341, 420, 432, 711, 802
BseMII CTCAG 5 cut(s) 252, 650, 674, 749, 764
BseNI ACTGG 3 cut(s) 76, 414, 556
BseXI GCAGC 1 cut(s) 711
BseYI CCCAGC 1 cut(s) 795
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 3 cut(s) 333, 723, 807
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 2 cut(s) 158, 808
BslFI GGGAC 3 cut(s) 219, 609, 632
BslI CCNNNNNNNGG 7 cut(s) 157, 340, 341, 420, 432, 711, 802
BsmFI GGGAC 3 cut(s) 219, 609, 632
BsnI GGCC 3 cut(s) 333, 723, 807
BsoBI CYCGRG 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 4 cut(s) 103, 322, 604, 647
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 706
BspANI GGCC 3 cut(s) 333, 723, 807
BspCNI CTCAG 5 cut(s) 253, 649, 673, 748, 763
BspLI GGNNCC 4 cut(s) 324, 345, 412, 425
BspMI ACCTGC 1 cut(s) 310
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 3 cut(s) 317, 330, 612
BsrI ACTGG 3 cut(s) 76, 414, 556
BssECI CCNNGG 4 cut(s) 6, 279, 317, 340
BssMI GATC 4 cut(s) 103, 322, 604, 647
BssT1I CCWWGG 2 cut(s) 279, 317
Bst2UI CCWGG 5 cut(s) 7, 327, 341, 508, 712
Bst4CI ACNGT 8 cut(s) 39, 246, 407, 486, 495, 567, 623, 667
Bst6I CTCTTC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 5 cut(s) 544, 548, 552, 706, 786
BstDEI CTNAG 8 cut(s) 88, 142, 261, 351, 636, 660, 735, 750
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 72, 587
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 4 cut(s) 106, 325, 607, 650
BstMBI GATC 4 cut(s) 103, 322, 604, 647
BstMWI GCNNNNNNNGC 1 cut(s) 705
BstNI CCWGG 5 cut(s) 7, 327, 341, 508, 712
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 6 cut(s) 5, 325, 339, 506, 710, 807
BstV1I GCAGC 1 cut(s) 711
BstX2I RGATCY 2 cut(s) 322, 647
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 2 cut(s) 322, 647
BsuRI GGCC 3 cut(s) 333, 723, 807
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 72, 587
BtsIMutI CAGTG 2 cut(s) 117, 412
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 5 cut(s) 544, 548, 552, 706, 786
CfoI GCGC 1 cut(s) 704
Cfr13I GGNCC 5 cut(s) 332, 344, 423, 504, 805
CsiI ACCWGGT 1 cut(s) 710
Csp6I GTAC 4 cut(s) 40, 429, 443, 834
CviAII CATG 6 cut(s) 152, 280, 518, 773, 790, 841
CviQI GTAC 4 cut(s) 40, 429, 443, 834
DdeI CTNAG 8 cut(s) 88, 142, 261, 351, 636, 660, 735, 750
DpnI GATC 4 cut(s) 105, 324, 606, 649
DpnII GATC 4 cut(s) 103, 322, 604, 647
DraIII CACNNNGTG 2 cut(s) 154, 844
DriI GACNNNNNGTC 2 cut(s) 289, 669
Eam1104I CTCTTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 2 cut(s) 289, 669
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 279, 317
Eco24I GRGCYC 1 cut(s) 751
Eco47I GGWCC 3 cut(s) 344, 423, 504
Eco57I CTGAAG 2 cut(s) 369, 595
Eco88I CYCGRG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 5 cut(s) 5, 325, 339, 506, 710
EcoT14I CCWWGG 2 cut(s) 279, 317
EcoT38I GRGCYC 1 cut(s) 751
ErhI CCWWGG 2 cut(s) 279, 317
FaeI CATG 6 cut(s) 155, 283, 521, 776, 793, 844
FaiI YATR 9 cut(s) 14, 33, 153, 276, 281, 519, 774, 791, 842
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 3 cut(s) 219, 609, 632
FatI CATG 6 cut(s) 151, 279, 517, 772, 789, 840
FauI CCCGC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 700
FokI GGATG 2 cut(s) 79, 594
FriOI GRGCYC 1 cut(s) 751
Fsp4HI GCNGC 1 cut(s) 700
FspBI CTAG 9 cut(s) 318, 336, 432, 474, 543, 645, 696, 729, 777
GlaI GCGC 1 cut(s) 703
GluI GCNGC 1 cut(s) 700
GsaI CCCAGC 1 cut(s) 799
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 3 cut(s) 333, 723, 807
HapII CCGG 2 cut(s) 158, 808
HhaI GCGC 1 cut(s) 704
Hin1II CATG 6 cut(s) 155, 283, 521, 776, 793, 844
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HinfI GANTC 6 cut(s) 187, 290, 296, 456, 634, 812
HpaII CCGG 2 cut(s) 158, 808
HphI GGTGA 4 cut(s) 140, 291, 305, 807
Hpy166II GTNNAC 2 cut(s) 479, 836
Hpy188I TCNGA 5 cut(s) 66, 252, 295, 573, 663
Hpy188III TCNNGA 3 cut(s) 19, 82, 613
Hpy8I GTNNAC 2 cut(s) 479, 836
HpyCH4III ACNGT 8 cut(s) 39, 246, 407, 486, 495, 567, 623, 667
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 3 cut(s) 70, 784, 847
HpyF10VI GCNNNNNNNGC 1 cut(s) 705
HpyF3I CTNAG 8 cut(s) 88, 142, 261, 351, 636, 660, 735, 750
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 6 cut(s) 155, 283, 521, 776, 793, 844
HspAI GCGC 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 322, 604, 647
LmnI GCTCC 2 cut(s) 252, 641
Lsp1109I GCAGC 1 cut(s) 711
LweI GCATC 2 cut(s) 40, 57
MabI ACCWGGT 1 cut(s) 710
MaeI CTAG 9 cut(s) 318, 336, 432, 474, 543, 645, 696, 729, 777
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 446, 766
MalI GATC 4 cut(s) 105, 324, 606, 649
MboI GATC 4 cut(s) 103, 322, 604, 647
MboII GAAGA 3 cut(s) 106, 375, 412
MflI RGATCY 2 cut(s) 322, 647
MhlI GDGCHC 1 cut(s) 751
MlyI GAGTC 3 cut(s) 290, 299, 628
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 206, 256, 348, 414, 495, 609, 688, 749, 796
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 158, 808
MspR9I CCNGG 6 cut(s) 7, 327, 341, 508, 712, 809
MvaI CCWGG 5 cut(s) 7, 327, 341, 508, 712
MwoI GCNNNNNNNGC 1 cut(s) 705
NciI CCSGG 1 cut(s) 809
NcoI CCATGG 1 cut(s) 279
NdeII GATC 4 cut(s) 103, 322, 604, 647
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 6 cut(s) 155, 283, 521, 776, 793, 844
NlaIV GGNNCC 4 cut(s) 324, 345, 412, 425
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 2 cut(s) 446, 766
NspI RCATGY 1 cut(s) 776
PaqCI CACCTGC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 187, 456, 812
PfoI TCCNGGA 1 cut(s) 506
PkrI GCNGC 1 cut(s) 701
PleI GAGTC 3 cut(s) 290, 298, 628
PpsI GAGTC 3 cut(s) 290, 298, 628
Ppu21I YACGTR 1 cut(s) 446
PpuMI RGGWCCY 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 423
Psp6I CCWGG 5 cut(s) 5, 325, 339, 506, 710
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 5 cut(s) 5, 325, 339, 506, 710
PspN4I GGNNCC 4 cut(s) 324, 345, 412, 425
PspPI GGNCC 5 cut(s) 332, 344, 423, 504, 805
PspPPI RGGWCCY 1 cut(s) 423
PsuI RGATCY 2 cut(s) 322, 647
RsaI GTAC 4 cut(s) 41, 430, 444, 835
RsaNI GTAC 4 cut(s) 40, 429, 443, 834
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 700
Sau3AI GATC 4 cut(s) 103, 322, 604, 647
Sau96I GGNCC 5 cut(s) 332, 344, 423, 504, 805
SchI GAGTC 3 cut(s) 290, 299, 628
ScrFI CCNGG 6 cut(s) 7, 327, 341, 508, 712, 809
SduI GDGCHC 1 cut(s) 751
SexAI ACCWGGT 1 cut(s) 710
SfaNI GCATC 2 cut(s) 40, 57
SinI GGWCC 3 cut(s) 344, 423, 504
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SsiI CCGC 1 cut(s) 706
SspMI CTAG 9 cut(s) 318, 336, 432, 474, 543, 645, 696, 729, 777
StyD4I CCNGG 6 cut(s) 5, 325, 339, 506, 710, 807
StyI CCWWGG 2 cut(s) 279, 317
TaaI ACNGT 8 cut(s) 39, 246, 407, 486, 495, 567, 623, 667
TaiI ACGT 1 cut(s) 448
TaqI TCGA 2 cut(s) 419, 527
TfiI GAWTC 3 cut(s) 187, 456, 812
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 117, 412
TseFI GTSAC 2 cut(s) 446, 766
TseI GCWGC 1 cut(s) 699
Tsp45I GTSAC 2 cut(s) 446, 766
TspRI CASTG 2 cut(s) 117, 412
VpaK11BI GGWCC 3 cut(s) 344, 423, 504
XceI RCATGY 1 cut(s) 776
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 9 cut(s) 318, 336, 432, 474, 543, 645, 696, 729, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.