pycom520g00860
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
OG0000094
Physical Location & Seq
Forward (+)
671704 .. 672414
711 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom520g00860.1

Sequence Viewer

Length: 711 bp
ATGCCATTTGGGTTGACGAATGCACCAGCAGCTTTCATGGATTTAATGAACCGGGTATTCCAGCCTTACCTGGATAGATTTGTCATTGTCTTCATTGACGATATTCTGGTGTATTCTAAGTCCAAAGCGGAGCATGTCCGACATCTTACTTTGGTGTTGAAGAGGTTGAGGGAACACCAATTGTATGCTAAGTTTAGCAAGTGTCAATTCTGGTTAGATCAAGTCGCGTTTTTGGGGCACATCATTTCTGCTCAAGGTATTCTCGTTGATCCTCAGAAGGTTGCAGCTGTGGAGAGTTGGGAGCAACCACGAACCGTCACTGAGGTGAGAAGTTTCATTGGTTTGGCAGGATATTATCGGAGATTCGTTAAGGATTTTTCGGTGATTGCCTTGCCACTGACGAGGTTAACAAGGAAAGATGTTAAGTTTGAGTGGAATGATAAATGTGAGCAGAGTTTCCAGCAGTTGAAGCATTGTCTTACTAATGCACCTGTTTTGGCACTCCCGGACGATAGTGGTGATTTTGAGGTTTATAGTGATGCTTCTTTGAATGGTCTGGGATGTGTATTGATGCAGCATGGTAGGGTGATTGCTTATGCTTCGCGGCAGTTGAAAACCCATGAGATGAATTACCCTACACATGATGGAATTGGCTGCTATCATCTTTGCGTTGAAGTTGTGGAGACACTATCTTTATGGAGAGAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

237

Amino Acids

27.16

Weight (kDa)

7.11

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 82 1.8e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 145 - 215 2.7e-22 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 171 - 215 5.4e-10 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 227, 604
AciI CCGC 2 cut(s) 128, 604
AclWI GGATC 1 cut(s) 263
AgsI TTSAA 5 cut(s) 160, 469, 550, 613, 674
AjnI CCWGG 1 cut(s) 69
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 2 cut(s) 32, 287
AluI AGCT 2 cut(s) 32, 287
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 263
ApeKI GCWGC 4 cut(s) 29, 284, 574, 654
AsuC2I CCSGG 2 cut(s) 53, 506
AsuHPI GGTGA 4 cut(s) 337, 394, 530, 598
BaeGI GKGCMC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 41, 296, 586, 641
BccI CCATC 1 cut(s) 638
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 2 cut(s) 53, 506
BcoDI GTCTC 1 cut(s) 677
BisI GCNGC 5 cut(s) 30, 285, 575, 605, 655
BlsI GCNGC 5 cut(s) 31, 286, 576, 606, 656
Bme1390I CCNGG 3 cut(s) 53, 71, 506
BmrFI CCNGG 3 cut(s) 53, 71, 506
BmsI GCATC 2 cut(s) 529, 561
BpiI GAAGAC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 53, 506
BseBI CCWGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 566
BseMII CTCAG 2 cut(s) 287, 312
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 4 cut(s) 41, 296, 586, 641
Bsh1236I CGCG 2 cut(s) 227, 604
BsiSI CCGG 2 cut(s) 52, 506
BsmAI GTCTC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 217, 268
BspACI CCGC 2 cut(s) 128, 604
BspCNI CTCAG 2 cut(s) 286, 313
BspFNI CGCG 2 cut(s) 227, 604
BspPI GGATC 1 cut(s) 263
BssMI GATC 2 cut(s) 217, 268
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 4 cut(s) 117, 189, 273, 321
BstF5I GGATG 1 cut(s) 566
BstFNI CGCG 2 cut(s) 227, 604
BstKTI GATC 2 cut(s) 220, 271
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 2 cut(s) 217, 268
BstMWI GCNNNNNNNGC 2 cut(s) 29, 469
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 51, 69, 504
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 2 cut(s) 227, 604
BstV1I GCAGC 4 cut(s) 41, 296, 586, 641
BstV2I GAAGAC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 566
BtsIMutI CAGTG 2 cut(s) 318, 395
CviAII CATG 5 cut(s) 37, 134, 578, 620, 641
CviJI RGCY 4 cut(s) 32, 64, 287, 654
CviKI_1 RGCY 4 cut(s) 32, 64, 287, 654
DdeI CTNAG 4 cut(s) 117, 189, 273, 321
DpnI GATC 2 cut(s) 219, 270
DpnII GATC 2 cut(s) 217, 268
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 5 cut(s) 40, 137, 581, 623, 644
FaiI YATR 9 cut(s) 38, 135, 186, 534, 579, 597, 621, 642, 697
FatI CATG 5 cut(s) 36, 133, 577, 619, 640
Fnu4HI GCNGC 5 cut(s) 30, 285, 575, 605, 655
FokI GGATG 1 cut(s) 573
Fsp4HI GCNGC 5 cut(s) 30, 285, 575, 605, 655
GluI GCNGC 5 cut(s) 30, 285, 575, 605, 655
HapII CCGG 2 cut(s) 52, 506
Hin1II CATG 5 cut(s) 40, 137, 581, 623, 644
HincII GTYRAC 2 cut(s) 15, 408
HindII GTYRAC 2 cut(s) 15, 408
HinfI GANTC 1 cut(s) 363
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 2 cut(s) 52, 506
HphI GGTGA 4 cut(s) 337, 394, 530, 598
Hpy166II GTNNAC 2 cut(s) 15, 408
Hpy188I TCNGA 3 cut(s) 140, 276, 360
Hpy8I GTNNAC 2 cut(s) 15, 408
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 23, 284, 488, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 469
HpyF3I CTNAG 4 cut(s) 117, 189, 273, 321
Hsp92II CATG 5 cut(s) 40, 137, 581, 623, 644
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 217, 268
LmnI GCTCC 2 cut(s) 130, 301
Lsp1109I GCAGC 4 cut(s) 41, 296, 586, 641
LweI GCATC 2 cut(s) 529, 561
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 219, 270
MboI GATC 2 cut(s) 217, 268
MboII GAAGA 2 cut(s) 82, 172
MfeI CAATTG 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 4 cut(s) 179, 206, 628, 648
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 6 cut(s) 156, 162, 282, 316, 396, 520
MseI TTAA 4 cut(s) 44, 369, 407, 423
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 52, 506
MspR9I CCNGG 3 cut(s) 53, 71, 506
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 227, 604
MwoI GCNNNNNNNGC 2 cut(s) 29, 469
NciI CCSGG 2 cut(s) 53, 506
NdeII GATC 2 cut(s) 217, 268
NlaIII CATG 5 cut(s) 40, 137, 581, 623, 644
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 323
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 363
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 5 cut(s) 31, 286, 576, 606, 656
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 4 cut(s) 44, 369, 407, 423
SatI GCNGC 5 cut(s) 30, 285, 575, 605, 655
Sau3AI GATC 2 cut(s) 217, 268
ScrFI CCNGG 3 cut(s) 53, 71, 506
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 2 cut(s) 529, 561
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 4 cut(s) 179, 206, 628, 648
SsiI CCGC 2 cut(s) 128, 604
StyD4I CCNGG 3 cut(s) 51, 69, 504
TaaI ACNGT 1 cut(s) 316
TasI AATT 4 cut(s) 179, 206, 628, 648
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 4 cut(s) 44, 369, 407, 423
Tru9I TTAA 4 cut(s) 44, 369, 407, 423
TscAI CASTG 2 cut(s) 325, 402
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 4 cut(s) 29, 284, 574, 654
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 5 cut(s) 25, 62, 82, 325, 641
TspRI CASTG 2 cut(s) 325, 402
XceI RCATGY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.