Rw1G015850

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000094
Physical Location & Seq
Forward (+)
35341885 .. 35343666
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015850.1

Sequence Viewer

Length: 1746 bp
ATGGTTAGCACTGAGAGGGAGCGGATTTATAGGTTTGTGGATGCTTTGGGGGGTAAGTATTCTGAGCAGCTGACAGGAGTGCCATTTAGTGATTATACTGAGGTCGTTAATGCTGCTTTACGACTTGAGACTATGTATATGTCTGGTACCCGACCTCGGGATTCGGGTGGCCCCAGTCAGGGCCCACCCAAGAAGGCTGCTTCTACTTCGGGGTCAGGATCTTCAACAGGCAGCGGACAGAGCAGTGGGTCTGGTGCTGGATCTCGTTATAGACGCGGGGGGCGTGACAGGAGATTTCCTCGGGGGCAGTTTAGTGGACGCCCGTTTGGGCAGAGCAGAGTTGGTTTGAGTGGTCAGCACAGGGCTCCAGCTAGGCAGCCAGCCCCGTTTGGGCAATATCAGTCAGTCGGATGCTTTGAGTGTGGACAGCAGGGCCACTTTAGGAGGGATTGCCCTCTATTGACTCAGAGAGCTGCATTTACTCCTTATCAGGCCGCGGGTCAGTCTTCTGCCGGTACGTCTACTAGTGGTACCGTGGCTTCTACTGGCGGTACCCAGCATAGTTCAGCAGCTCGTGGCAGTCCGCAGCGGGGTAGGGGTCAGAGAGGACGTCCTACCACTCAGGCTCGGTTGCATGCCATGACACAGCAGGAGGGCCACGACTCACCAGATGTTATCATTGGTACGTTGTCTGTTTTTGGTCAGCCCGCTTATACTTTAATTGACCCTGGTGCTTCGCATTCTTTTATGTCGAGTAGATTTGCATGTTTTGCGAATGTGCCATCATCACTCCTTATTGGTGAATGGAATGTATTATTACCTGCTGGAGCATCACTTAAGATAGAATGGGTTTTTAGAGGTTGTGATGTTTTGATTGAGGGTGTTAATTTGGAGGTTGATTTAATTCCATTAGAGCTTGTTGAATTTGATGTGATTTTGGGGATGGAGTTCTTGATTGTGGTCTTTCAAAGTCCAGGGAAGCCAATGATTACCTTTCAGGGAGAACGTAATGTTCTAGCTTCCTGTATGATTTCCACTTTGACCGCTGAGAAGCTGTTGAATAAGGGAGGTCAGGCTTATTTGGCACATGTGGTGGACACTAACAGGGAAGAGTTGAGTATTAGAGAGATACCAGTGGTTAGGAAATTTCCGGATGTATTTCCTGACGAATTACCTGGCTTACCTCCTGCTAGGGAGATAGATTTCACTATTGATTTACTCCCTGGCACCACACCCATATCTTTGGCACCATACAGAATGGCCCCGGCTGAATTAAGAGAGTTGAAGATTCAGTTGCAAGAACTAGTGGATAAGGGGTTCATCCAATCTAGTGTGTCTCCTTGGGGTGCCCCGGTTTTATTTGTCAAGAAGAAGGATGGTTCTTTACGGTTGTGCATTGATTATAGGAAGTTGAATAGGGTTACTGTGAAGAATAAATACCCTTTGCCTCGTATTGACGACCTCTTTGACCAGTTGAGGGGAGCCAAGGTCTTTTCCAAGATTGATTTGAGGTCTGGTTACCATCAGTTGAGGATAAGAGAGTCTGATGTACCCAAGACTGCATTTCGATCACGTTATGGGCATTATGAATTTAGAGTGATGCCGTTTGGATTGACTAATGCCCCTGCAGCTTTTATGGACCTCATGAATAGAGTGTTCCGTCCGTACCTTGATCGATTTGTATTGTGTTCATTGATGATATCTTGGTGTATTCAAAGGACAATCGTCAACATGCCAAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

581

Amino Acids

63.96

Weight (kDa)

9.53

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 207 - 318 1.3e-23 Retroviral aspartyl protease
RVT_1 PF00078 455 - 560 5.5e-22 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 829
Acc65I GGTACC 3 cut(s) 146, 530, 551
AccB1I GGYRCC 6 cut(s) 146, 530, 551, 1226, 1246, 1346
AccBSI CCGCTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 521
AccII CGCG 2 cut(s) 276, 497
AccIII TCCGGA 1 cut(s) 1150
AclWI GGATC 2 cut(s) 226, 268
AcsI RAATTY 3 cut(s) 923, 1145, 1589
AcyI GRCGYC 2 cut(s) 319, 610
AfaI GTAC 7 cut(s) 148, 517, 532, 553, 685, 1551, 1667
AfiI CCNNNNNNNGG 7 cut(s) 156, 157, 178, 179, 390, 590, 1477
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 1087
AgsI TTSAA 7 cut(s) 225, 923, 968, 1060, 1285, 1414, 1715
AhlI ACTAGT 2 cut(s) 524, 1303
AjnI CCWGG 4 cut(s) 727, 973, 1174, 1222
AloI GAACNNNNNNTCC 2 cut(s) 1301, 1333
AluBI AGCT 8 cut(s) 70, 371, 473, 572, 916, 1019, 1054, 1631
AluI AGCT 8 cut(s) 70, 371, 473, 572, 916, 1019, 1054, 1631
Alw26I GTCTC 2 cut(s) 122, 1341
AlwI GGATC 2 cut(s) 226, 268
Ama87I CYCGRG 2 cut(s) 156, 300
Aor13HI TCCGGA 1 cut(s) 1150
AoxI GGCC 6 cut(s) 169, 181, 433, 492, 655, 1260
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 9 cut(s) 67, 113, 197, 231, 376, 473, 569, 586, 1628
ApoI RAATTY 3 cut(s) 923, 1145, 1589
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
Asp718I GGTACC 3 cut(s) 146, 530, 551
AspS9I GGNCC 7 cut(s) 170, 181, 182, 433, 655, 1261, 1639
AsuC2I CCSGG 2 cut(s) 1265, 1352
AsuHPI GGTGA 2 cut(s) 657, 812
AvaI CYCGRG 2 cut(s) 156, 300
AvaII GGWCC 1 cut(s) 1639
BaeGI GKGCMC 2 cut(s) 185, 1351
BanI GGYRCC 6 cut(s) 146, 530, 551, 1226, 1246, 1346
BanII GRGCYC 2 cut(s) 185, 367
BarI GAAGNNNNNNTAC 4 cut(s) 523, 555, 1421, 1453
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 9 cut(s) 79, 100, 184, 243, 388, 460, 581, 598, 1640
BccI CCATC 4 cut(s) 790, 937, 1370, 1530
BceAI ACGGC 1 cut(s) 1588
BciT130I CCWGG 4 cut(s) 729, 975, 1176, 1224
BcnI CCSGG 2 cut(s) 1265, 1352
BcoDI GTCTC 2 cut(s) 122, 1341
BcuI ACTAGT 2 cut(s) 524, 1303
BfaI CTAG 6 cut(s) 372, 525, 1016, 1191, 1304, 1329
BfmI CTRYAG 1 cut(s) 1626
BfrI CTTAAG 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 829
Bme1390I CCNGG 6 cut(s) 729, 975, 1176, 1224, 1265, 1352
Bme18I GGWCC 1 cut(s) 1639
BmeT110I CYCGRG 2 cut(s) 156, 300
BmgT120I GGNCC 7 cut(s) 170, 181, 182, 433, 655, 1261, 1639
BmrFI CCNGG 6 cut(s) 729, 975, 1176, 1224, 1265, 1352
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 4 cut(s) 31, 401, 839, 1590
BmuI ACTGGG 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 1724
BpiI GAAGAC 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 2 cut(s) 351, 846
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 1265, 1352
Bsa29I ATCGAT 1 cut(s) 1675
BsaHI GRCGYC 2 cut(s) 319, 610
BsaWI WCCGGW 1 cut(s) 1150
BsaXI ACNNNNNCTCC 2 cut(s) 1473, 1503
Bsc4I CCNNNNNNNGG 7 cut(s) 156, 157, 178, 179, 390, 590, 1477
Bse118I RCCGGY 1 cut(s) 512
Bse1I ACTGG 4 cut(s) 174, 550, 1133, 1471
BseAI TCCGGA 1 cut(s) 1150
BseBI CCWGG 4 cut(s) 729, 975, 1176, 1224
BseCI ATCGAT 1 cut(s) 1675
BseGI GGATG 6 cut(s) 46, 416, 948, 1159, 1320, 1381
BseLI CCNNNNNNNGG 7 cut(s) 156, 157, 178, 179, 390, 590, 1477
BseMII CTCAG 5 cut(s) 54, 90, 479, 635, 1038
BseNI ACTGG 4 cut(s) 174, 550, 1133, 1471
BseSI GKGCMC 2 cut(s) 185, 1351
BseXI GCAGC 9 cut(s) 79, 100, 184, 243, 388, 460, 581, 598, 1640
BseYI CCCAGC 1 cut(s) 555
Bsh1236I CGCG 2 cut(s) 276, 497
BshFI GGCC 6 cut(s) 171, 183, 435, 494, 657, 1262
BshNI GGYRCC 6 cut(s) 146, 530, 551, 1226, 1246, 1346
BshVI ATCGAT 1 cut(s) 1675
BsiHKCI CYCGRG 2 cut(s) 156, 300
BsiSI CCGG 4 cut(s) 513, 1151, 1265, 1352
BslI CCNNNNNNNGG 7 cut(s) 156, 157, 178, 179, 390, 590, 1477
BsmAI GTCTC 2 cut(s) 122, 1341
BsmI GAATGC 1 cut(s) 739
BsnI GGCC 6 cut(s) 171, 183, 435, 494, 657, 1262
BsoBI CYCGRG 2 cut(s) 156, 300
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 3 cut(s) 185, 367, 1351
Bsp13I TCCGGA 1 cut(s) 1150
Bsp143I GATC 4 cut(s) 218, 260, 1568, 1672
BspANI GGCC 6 cut(s) 171, 183, 435, 494, 657, 1262
BspCNI CTCAG 6 cut(s) 4, 55, 91, 478, 634, 1039
BspDI ATCGAT 1 cut(s) 1675
BspEI TCCGGA 1 cut(s) 1150
BspFNI CGCG 2 cut(s) 276, 497
BspHI TCATGA 1 cut(s) 1644
BspMAI CTGCAG 1 cut(s) 1630
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 2 cut(s) 226, 268
BspT107I GGYRCC 6 cut(s) 146, 530, 551, 1226, 1246, 1346
BspTI CTTAAG 1 cut(s) 836
BsrBI CCGCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 512
BsrI ACTGG 4 cut(s) 174, 550, 1133, 1471
BssAI RCCGGY 1 cut(s) 512
BssMI GATC 4 cut(s) 218, 260, 1568, 1672
BssNI GRCGYC 2 cut(s) 319, 610
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 2 cut(s) 1340, 1485
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 4 cut(s) 729, 975, 1176, 1224
Bst4CI ACNGT 3 cut(s) 535, 1389, 1426
Bst6I CTCTTC 1 cut(s) 1104
BstACI GRCGYC 2 cut(s) 319, 610
BstAFI CTTAAG 1 cut(s) 836
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 3 cut(s) 381, 636, 708
BstDEI CTNAG 6 cut(s) 12, 63, 99, 465, 621, 1047
BstDSI CCRYGG 2 cut(s) 495, 534
BstEII GGTNACC 1 cut(s) 1517
BstF5I GGATG 6 cut(s) 46, 416, 948, 1159, 1320, 1381
BstFNI CGCG 2 cut(s) 276, 497
BstKTI GATC 4 cut(s) 221, 263, 1571, 1675
BstMAI GTCTC 2 cut(s) 122, 1341
BstMBI GATC 4 cut(s) 218, 260, 1568, 1672
BstMWI GCNNNNNNNGC 4 cut(s) 240, 770, 1082, 1628
BstNI CCWGG 4 cut(s) 729, 975, 1176, 1224
BstNSI RCATGY 4 cut(s) 638, 768, 1091, 1735
BstPAI GACNNNNGTC 1 cut(s) 1724
BstPI GGTNACC 1 cut(s) 1517
BstSCI CCNGG 6 cut(s) 727, 973, 1174, 1222, 1263, 1350
BstSFI CTRYAG 1 cut(s) 1626
BstSLI GKGCMC 2 cut(s) 185, 1351
BstUI CGCG 2 cut(s) 276, 497
BstV1I GCAGC 9 cut(s) 79, 100, 184, 243, 388, 460, 581, 598, 1640
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 218, 260
BstXI CCANNNNNNTGG 1 cut(s) 1243
BstYI RGATCY 2 cut(s) 218, 260
Bsu15I ATCGAT 1 cut(s) 1675
BsuRI GGCC 6 cut(s) 171, 183, 435, 494, 657, 1262
BsuTUI ATCGAT 1 cut(s) 1675
BtgI CCRYGG 2 cut(s) 495, 534
BtsCI GGATG 6 cut(s) 46, 416, 948, 1159, 1320, 1381
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 3 cut(s) 9, 250, 1140
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 3 cut(s) 381, 636, 708
CciI TCATGA 1 cut(s) 1644
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 7 cut(s) 170, 181, 182, 433, 655, 1261, 1639
Cfr42I CCGCGG 1 cut(s) 498
ClaI ATCGAT 1 cut(s) 1675
CseI GACGC 2 cut(s) 282, 327
Csp6I GTAC 7 cut(s) 147, 516, 531, 552, 684, 1550, 1666
CviAII CATG 6 cut(s) 635, 640, 765, 1088, 1645, 1732
CviQI GTAC 7 cut(s) 147, 516, 531, 552, 684, 1550, 1666
DdeI CTNAG 6 cut(s) 12, 63, 99, 465, 621, 1047
DpnI GATC 4 cut(s) 220, 262, 1570, 1674
DpnII GATC 4 cut(s) 218, 260, 1568, 1672
Eam1104I CTCTTC 1 cut(s) 1104
EarI CTCTTC 1 cut(s) 1104
Eco130I CCWWGG 2 cut(s) 1340, 1485
Eco24I GRGCYC 2 cut(s) 185, 367
Eco32I GATATC 1 cut(s) 1701
Eco47I GGWCC 1 cut(s) 1639
Eco88I CYCGRG 2 cut(s) 156, 300
Eco91I GGTNACC 1 cut(s) 1517
EcoO109I RGGNCCY 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 1517
EcoRII CCWGG 4 cut(s) 727, 973, 1174, 1222
EcoRV GATATC 1 cut(s) 1701
EcoT14I CCWWGG 2 cut(s) 1340, 1485
EcoT38I GRGCYC 2 cut(s) 185, 367
ErhI CCWWGG 2 cut(s) 1340, 1485
FaeI CATG 6 cut(s) 638, 643, 768, 1091, 1648, 1735
FatI CATG 6 cut(s) 634, 639, 764, 1087, 1644, 1731
FauI CCCGC 4 cut(s) 269, 490, 582, 715
FblI GTMKAC 1 cut(s) 521
FokI GGATG 6 cut(s) 53, 423, 955, 1166, 1307, 1388
FriOI GRGCYC 2 cut(s) 185, 367
FspBI CTAG 6 cut(s) 372, 525, 1016, 1191, 1304, 1329
GsaI CCCAGC 1 cut(s) 559
GsuI CTGGAG 2 cut(s) 351, 846
HaeIII GGCC 6 cut(s) 171, 183, 435, 494, 657, 1262
HapII CCGG 4 cut(s) 513, 1151, 1265, 1352
HgaI GACGC 2 cut(s) 282, 327
Hin1I GRCGYC 2 cut(s) 319, 610
Hin1II CATG 6 cut(s) 638, 643, 768, 1091, 1648, 1735
HincII GTYRAC 1 cut(s) 1729
HindII GTYRAC 1 cut(s) 1729
HinfI GANTC 5 cut(s) 161, 463, 662, 1288, 1541
HpaII CCGG 4 cut(s) 513, 1151, 1265, 1352
HphI GGTGA 2 cut(s) 657, 812
Hpy166II GTNNAC 5 cut(s) 317, 425, 522, 1096, 1729
Hpy188I TCNGA 5 cut(s) 64, 410, 468, 603, 1546
Hpy188III TCNNGA 7 cut(s) 158, 216, 952, 1151, 1163, 1366, 1645
Hpy8I GTNNAC 5 cut(s) 317, 425, 522, 1096, 1729
HpyAV CCTTC 2 cut(s) 187, 1366
HpyCH4III ACNGT 3 cut(s) 535, 1389, 1426
HpyCH4IV ACGT 5 cut(s) 518, 610, 686, 1006, 1573
HpyCH4V TGCA 7 cut(s) 476, 634, 764, 1297, 1395, 1562, 1628
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 770, 1082, 1628
HpyF3I CTNAG 6 cut(s) 12, 63, 99, 465, 621, 1047
HpySE526I ACGT 5 cut(s) 518, 610, 686, 1006, 1573
Hsp92I GRCGYC 2 cut(s) 319, 610
Hsp92II CATG 6 cut(s) 638, 643, 768, 1091, 1648, 1735
Kpn2I TCCGGA 1 cut(s) 1150
KpnI GGTACC 3 cut(s) 150, 534, 555
KspI CCGCGG 1 cut(s) 498
Kzo9I GATC 4 cut(s) 218, 260, 1568, 1672
LmnI GCTCC 4 cut(s) 19, 370, 827, 1481
Lsp1109I GCAGC 9 cut(s) 79, 100, 184, 243, 388, 460, 581, 598, 1640
LweI GCATC 4 cut(s) 31, 401, 839, 1590
MaeI CTAG 6 cut(s) 372, 525, 1016, 1191, 1304, 1329
MaeII ACGT 5 cut(s) 518, 610, 686, 1006, 1573
MaeIII GTNAC 3 cut(s) 284, 1420, 1517
MalI GATC 4 cut(s) 220, 262, 1570, 1674
MbiI CCGCTC 1 cut(s) 22
MboI GATC 4 cut(s) 218, 260, 1568, 1672
MboII GAAGA 6 cut(s) 213, 498, 1121, 1297, 1381, 1441
MflI RGATCY 2 cut(s) 218, 260
MhlI GDGCHC 3 cut(s) 185, 367, 1351
MluCI AATT 8 cut(s) 720, 886, 903, 923, 1145, 1169, 1271, 1589
MlyI GAGTC 3 cut(s) 457, 656, 1550
MmeI TCCRAC 1 cut(s) 388
MroI TCCGGA 1 cut(s) 1150
MseI TTAA 6 cut(s) 108, 719, 837, 885, 902, 1274
MspA1I CMGCKG 5 cut(s) 70, 234, 497, 589, 1046
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 4 cut(s) 513, 1151, 1265, 1352
MspR9I CCNGG 6 cut(s) 729, 975, 1176, 1224, 1265, 1352
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 4 cut(s) 729, 975, 1176, 1224
MvnI CGCG 2 cut(s) 276, 497
MwoI GCNNNNNNNGC 4 cut(s) 240, 770, 1082, 1628
NciI CCSGG 2 cut(s) 1265, 1352
NdeII GATC 4 cut(s) 218, 260, 1568, 1672
NlaIII CATG 6 cut(s) 638, 643, 768, 1091, 1648, 1735
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 4 cut(s) 638, 768, 1091, 1735
PaeI GCATGC 1 cut(s) 638
PagI TCATGA 1 cut(s) 1644
PciI ACATGT 1 cut(s) 1087
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 161, 1288
PleI GAGTC 3 cut(s) 457, 656, 1549
PpsI GAGTC 3 cut(s) 457, 656, 1549
PscI ACATGT 1 cut(s) 1087
PshAI GACNNNNGTC 1 cut(s) 1724
Psp6I CCWGG 4 cut(s) 727, 973, 1174, 1222
PspEI GGTNACC 1 cut(s) 1517
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 4 cut(s) 727, 973, 1174, 1222
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 7 cut(s) 170, 181, 182, 433, 655, 1261, 1639
PstI CTGCAG 1 cut(s) 1630
PsuI RGATCY 2 cut(s) 218, 260
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 7 cut(s) 148, 517, 532, 553, 685, 1551, 1667
RsaNI GTAC 7 cut(s) 147, 516, 531, 552, 684, 1550, 1666
SacII CCGCGG 1 cut(s) 498
SaqAI TTAA 6 cut(s) 108, 719, 837, 885, 902, 1274
Sau3AI GATC 4 cut(s) 218, 260, 1568, 1672
Sau96I GGNCC 7 cut(s) 170, 181, 182, 433, 655, 1261, 1639
SchI GAGTC 3 cut(s) 457, 656, 1550
ScrFI CCNGG 6 cut(s) 729, 975, 1176, 1224, 1265, 1352
SduI GDGCHC 3 cut(s) 185, 367, 1351
SfaNI GCATC 4 cut(s) 31, 401, 839, 1590
SfcI CTRYAG 1 cut(s) 1626
Sfr303I CCGCGG 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 498
SinI GGWCC 1 cut(s) 1639
SmlI CTYRAG 2 cut(s) 125, 836
SmoI CTYRAG 2 cut(s) 125, 836
SpeI ACTAGT 2 cut(s) 524, 1303
SphI GCATGC 1 cut(s) 638
Sse9I AATT 8 cut(s) 720, 886, 903, 923, 1145, 1169, 1271, 1589
SspMI CTAG 6 cut(s) 372, 525, 1016, 1191, 1304, 1329
StyD4I CCNGG 6 cut(s) 727, 973, 1174, 1222, 1263, 1350
StyI CCWWGG 2 cut(s) 1340, 1485
TaaI ACNGT 3 cut(s) 535, 1389, 1426
TaiI ACGT 5 cut(s) 521, 613, 689, 1009, 1576
TaqI TCGA 3 cut(s) 752, 1567, 1675
TasI AATT 8 cut(s) 720, 886, 903, 923, 1145, 1169, 1271, 1589
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 2 cut(s) 161, 1288
Tru1I TTAA 6 cut(s) 108, 719, 837, 885, 902, 1274
Tru9I TTAA 6 cut(s) 108, 719, 837, 885, 902, 1274
TscAI CASTG 3 cut(s) 16, 250, 1140
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 9 cut(s) 67, 113, 197, 231, 376, 473, 569, 586, 1628
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 1309, 1602, 1661, 1680
TspGWI ACGGA 2 cut(s) 1649, 1653
TspRI CASTG 3 cut(s) 16, 250, 1140
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 1639
XapI RAATTY 3 cut(s) 923, 1145, 1589
XceI RCATGY 4 cut(s) 638, 768, 1091, 1735
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 6 cut(s) 372, 525, 1016, 1191, 1304, 1329
ZraI GACGTC 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.