FvH4_5g24911

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Reverse (-)
16365465 .. 16367110
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24911.t1

Sequence Viewer

Length: 1578 bp
ATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTAGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCTTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGTTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGTCCGAGAGTTATCCCGGATACATAATGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGATGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

526

Amino Acids

60.49

Weight (kDa)

8.53

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 122 - 179 1.1e-20 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 2 cut(s) 848, 1030
AciI CCGC 6 cut(s) 125, 229, 291, 734, 1196, 1481
AclWI GGATC 1 cut(s) 1358
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 3 cut(s) 818, 989, 1220
AcuI CTGAAG 2 cut(s) 818, 847
AcyI GRCGYC 1 cut(s) 1031
AfaI GTAC 2 cut(s) 634, 850
AfiI CCNNNNNNNGG 2 cut(s) 642, 1265
AgeI ACCGGT 1 cut(s) 1429
AgsI TTSAA 4 cut(s) 376, 454, 1220, 1226
AjnI CCWGG 1 cut(s) 43
Alw21I GWGCWC 2 cut(s) 741, 832
AlwI GGATC 1 cut(s) 1358
AoxI GGCC 4 cut(s) 206, 470, 534, 1108
ApeKI GCWGC 7 cut(s) 293, 416, 494, 839, 1378, 1387, 1552
ApoI RAATTY 3 cut(s) 818, 989, 1220
ArsI GACNNNNNNTTYG 4 cut(s) 791, 823, 1393, 1425
AsiGI ACCGGT 1 cut(s) 1429
Asp700I GAANNNNTTC 1 cut(s) 1431
Asp718I GGTACC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 1033
AspS9I GGNCC 3 cut(s) 595, 799, 1109
AsuC2I CCSGG 2 cut(s) 426, 1315
AsuHPI GGTGA 4 cut(s) 595, 670, 673, 1244
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 2 cut(s) 595, 799
BalI TGGCCA 1 cut(s) 472
BanI GGYRCC 2 cut(s) 848, 1030
BanII GRGCYC 2 cut(s) 741, 832
BarI GAAGNNNNNNTAC 2 cut(s) 1329, 1361
Bbv12I GWGCWC 2 cut(s) 741, 832
BbvI GCAGC 7 cut(s) 305, 403, 506, 851, 1365, 1399, 1564
BccI CCATC 6 cut(s) 106, 262, 314, 635, 884, 979
BceAI ACGGC 1 cut(s) 553
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 3 cut(s) 1311, 1348, 1569
BcnI CCSGG 2 cut(s) 426, 1315
BfaI CTAG 1 cut(s) 1017
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 1034
BfuI GTATCC 3 cut(s) 1311, 1348, 1569
BglII AGATCT 1 cut(s) 1213
BisI GCNGC 8 cut(s) 291, 294, 417, 495, 840, 1379, 1388, 1553
BlsI GCNGC 8 cut(s) 292, 295, 418, 496, 841, 1380, 1389, 1554
Bme1390I CCNGG 3 cut(s) 45, 426, 1315
Bme18I GGWCC 2 cut(s) 595, 799
BmgT120I GGNCC 3 cut(s) 595, 799, 1109
BmiI GGNNCC 7 cut(s) 289, 596, 800, 801, 850, 1032, 1428
BmrFI CCNGG 3 cut(s) 45, 426, 1315
BmsI GCATC 3 cut(s) 58, 1482, 1539
BplI GAGNNNNNCTC 2 cut(s) 1146, 1178
Bpu10I CCTNAGC 1 cut(s) 1463
Bpu14I TTCGAA 1 cut(s) 281
BpuEI CTTGAG 2 cut(s) 584, 1148
BpuMI CCSGG 2 cut(s) 426, 1315
BsaHI GRCGYC 1 cut(s) 1031
BsaJI CCNNGG 2 cut(s) 606, 1259
BsaWI WCCGGW 1 cut(s) 1429
BsaXI ACNNNNNCTCC 4 cut(s) 914, 944, 1045, 1075
Bsc4I CCNNNNNNNGG 2 cut(s) 642, 1265
Bse118I RCCGGY 1 cut(s) 1429
Bse1I ACTGG 4 cut(s) 192, 209, 581, 701
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 606, 1259
BseGI GGATG 4 cut(s) 40, 421, 877, 1204
BseLI CCNNNNNNNGG 2 cut(s) 642, 1265
BseMII CTCAG 2 cut(s) 896, 1187
BseNI ACTGG 4 cut(s) 192, 209, 581, 701
BseRI GAGGAG 1 cut(s) 1553
BseXI GCAGC 7 cut(s) 305, 403, 506, 851, 1365, 1399, 1564
BsgI GTGCAG 1 cut(s) 672
Bsh1285I CGRYCG 1 cut(s) 1447
BshFI GGCC 4 cut(s) 208, 472, 536, 1110
BshNI GGYRCC 2 cut(s) 848, 1030
BshTI ACCGGT 1 cut(s) 1429
BsiEI CGRYCG 1 cut(s) 1447
BsiHKAI GWGCWC 2 cut(s) 741, 832
BsiSI CCGG 3 cut(s) 425, 1315, 1430
BslFI GGGAC 3 cut(s) 337, 608, 812
BslI CCNNNNNNNGG 2 cut(s) 642, 1265
BsmFI GGGAC 3 cut(s) 337, 608, 812
BsnI GGCC 4 cut(s) 208, 472, 536, 1110
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 741, 832
Bsp143I GATC 5 cut(s) 298, 793, 1213, 1363, 1392
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 6 cut(s) 125, 229, 291, 734, 1196, 1481
BspANI GGCC 4 cut(s) 208, 472, 536, 1110
BspCNI CTCAG 2 cut(s) 895, 1186
BspLI GGNNCC 7 cut(s) 289, 596, 800, 801, 850, 1032, 1428
BspPI GGATC 1 cut(s) 1358
BspQI GCTCTTC 1 cut(s) 837
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 2 cut(s) 848, 1030
BsrFI RCCGGY 1 cut(s) 1429
BsrI ACTGG 4 cut(s) 192, 209, 581, 701
BssAI RCCGGY 1 cut(s) 1429
BssECI CCNNGG 2 cut(s) 606, 1259
BssMI GATC 5 cut(s) 298, 793, 1213, 1363, 1392
BssNI GRCGYC 1 cut(s) 1031
BssT1I CCWWGG 2 cut(s) 606, 1259
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 240, 653
Bst6I CTCTTC 8 cut(s) 310, 363, 371, 476, 837, 866, 1416, 1574
BstACI GRCGYC 1 cut(s) 1031
BstAPI GCANNNNNTGC 2 cut(s) 416, 1549
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 144, 1067
BstDEI CTNAG 5 cut(s) 74, 882, 1173, 1297, 1463
BstDSI CCRYGG 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 1263
BstF5I GGATG 4 cut(s) 40, 421, 877, 1204
BstH2I RGCGCY 1 cut(s) 1034
BstHHI GCGC 1 cut(s) 1033
BstKTI GATC 5 cut(s) 301, 796, 1216, 1366, 1395
BstMBI GATC 5 cut(s) 298, 793, 1213, 1363, 1392
BstMCI CGRYCG 1 cut(s) 1447
BstMWI GCNNNNNNNGC 7 cut(s) 188, 416, 836, 1293, 1384, 1387, 1549
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 3 cut(s) 43, 424, 1313
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 7 cut(s) 305, 403, 506, 851, 1365, 1399, 1564
BstX2I RGATCY 1 cut(s) 1213
BstYI RGATCY 1 cut(s) 1213
BsuI GTATCC 3 cut(s) 1311, 1348, 1569
BsuRI GGCC 4 cut(s) 208, 472, 536, 1110
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 4 cut(s) 40, 421, 877, 1204
BtsI GCAGTG 2 cut(s) 867, 1064
BtsIMutI CAGTG 6 cut(s) 19, 171, 588, 708, 867, 1064
Cac8I GCNNGC 2 cut(s) 144, 1067
CfoI GCGC 1 cut(s) 1033
Cfr10I RCCGGY 1 cut(s) 1429
Cfr13I GGNCC 3 cut(s) 595, 799, 1109
Csp6I GTAC 2 cut(s) 633, 849
CspAI ACCGGT 1 cut(s) 1429
CviQI GTAC 2 cut(s) 633, 849
DdeI CTNAG 5 cut(s) 74, 882, 1173, 1297, 1463
DinI GGCGCC 1 cut(s) 1032
DpnI GATC 5 cut(s) 300, 795, 1215, 1365, 1394
DpnII GATC 5 cut(s) 298, 793, 1213, 1363, 1392
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 8 cut(s) 310, 363, 371, 476, 837, 866, 1416, 1574
EarI CTCTTC 8 cut(s) 310, 363, 371, 476, 837, 866, 1416, 1574
EciI GGCGGA 1 cut(s) 749
Ecl136II GAGCTC 2 cut(s) 739, 830
Eco130I CCWWGG 2 cut(s) 606, 1259
Eco24I GRGCYC 2 cut(s) 741, 832
Eco47I GGWCC 2 cut(s) 595, 799
Eco53kI GAGCTC 2 cut(s) 739, 830
Eco57I CTGAAG 2 cut(s) 818, 847
EcoICRI GAGCTC 2 cut(s) 739, 830
EcoNI CCTNNNNNAGG 1 cut(s) 1263
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 606, 1259
EcoT38I GRGCYC 2 cut(s) 741, 832
EgeI GGCGCC 1 cut(s) 1032
EheI GGCGCC 1 cut(s) 1032
ErhI CCWWGG 2 cut(s) 606, 1259
FaqI GGGAC 3 cut(s) 337, 608, 812
FauI CCCGC 2 cut(s) 222, 1488
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 8 cut(s) 291, 294, 417, 495, 840, 1379, 1388, 1553
FokI GGATG 4 cut(s) 27, 408, 864, 1211
FriOI GRGCYC 2 cut(s) 741, 832
Fsp4HI GCNGC 8 cut(s) 291, 294, 417, 495, 840, 1379, 1388, 1553
FspBI CTAG 1 cut(s) 1017
GlaI GCGC 1 cut(s) 1032
GluI GCNGC 8 cut(s) 291, 294, 417, 495, 840, 1379, 1388, 1553
HaeII RGCGCY 1 cut(s) 1034
HaeIII GGCC 4 cut(s) 208, 472, 536, 1110
HapII CCGG 3 cut(s) 425, 1315, 1430
HhaI GCGC 1 cut(s) 1033
Hin1I GRCGYC 1 cut(s) 1031
Hin6I GCGC 1 cut(s) 1031
HinP1I GCGC 1 cut(s) 1031
HindIII AAGCTT 1 cut(s) 1294
HinfI GANTC 7 cut(s) 248, 325, 675, 779, 1161, 1438, 1532
HpaII CCGG 3 cut(s) 425, 1315, 1430
HphI GGTGA 4 cut(s) 595, 670, 673, 1244
Hpy188III TCNNGA 7 cut(s) 776, 797, 1165, 1217, 1246, 1442, 1489
HpyAV CCTTC 3 cut(s) 448, 561, 1377
HpyCH4III ACNGT 2 cut(s) 240, 653
HpyCH4V TGCA 7 cut(s) 27, 410, 494, 689, 949, 1381, 1552
HpyF10VI GCNNNNNNNGC 7 cut(s) 188, 416, 836, 1293, 1384, 1387, 1549
HpyF3I CTNAG 5 cut(s) 74, 882, 1173, 1297, 1463
Hsp92I GRCGYC 1 cut(s) 1031
HspAI GCGC 1 cut(s) 1031
KasI GGCGCC 1 cut(s) 1030
KflI GGGWCCC 1 cut(s) 799
KpnI GGTACC 1 cut(s) 852
Kzo9I GATC 5 cut(s) 298, 793, 1213, 1363, 1392
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 5 cut(s) 287, 736, 827, 1453, 1540
Lsp1109I GCAGC 7 cut(s) 305, 403, 506, 851, 1365, 1399, 1564
LweI GCATC 3 cut(s) 58, 1482, 1539
MaeI CTAG 1 cut(s) 1017
MaeIII GTNAC 1 cut(s) 1126
MalI GATC 5 cut(s) 300, 795, 1215, 1365, 1394
MboI GATC 5 cut(s) 298, 793, 1213, 1363, 1392
MflI RGATCY 1 cut(s) 1213
MhlI GDGCHC 2 cut(s) 741, 832
MlsI TGGCCA 1 cut(s) 472
MluCI AATT 9 cut(s) 489, 719, 728, 753, 818, 854, 989, 1220, 1250
MluNI TGGCCA 1 cut(s) 472
Mly113I GGCGCC 1 cut(s) 1031
MlyI GAGTC 3 cut(s) 319, 669, 1155
MmeI TCCRAC 1 cut(s) 1058
Mox20I TGGCCA 1 cut(s) 472
MroXI GAANNNNTTC 1 cut(s) 1431
MscI TGGCCA 1 cut(s) 472
MseI TTAA 4 cut(s) 8, 336, 1118, 1143
MslI CAYNNNNRTG 3 cut(s) 437, 605, 1025
Msp20I TGGCCA 1 cut(s) 472
MspI CCGG 3 cut(s) 425, 1315, 1430
MspR9I CCNGG 3 cut(s) 45, 426, 1315
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 7 cut(s) 188, 416, 836, 1293, 1384, 1387, 1549
NarI GGCGCC 1 cut(s) 1031
NciI CCSGG 2 cut(s) 426, 1315
NcoI CCATGG 1 cut(s) 606
NdeI CATATG 1 cut(s) 412
NdeII GATC 5 cut(s) 298, 793, 1213, 1363, 1392
NlaIV GGNNCC 7 cut(s) 289, 596, 800, 801, 850, 1032, 1428
NspV TTCGAA 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 1431
PfeI GAWTC 4 cut(s) 248, 779, 1438, 1532
PfoI TCCNGGA 2 cut(s) 43, 1313
PinAI ACCGGT 1 cut(s) 1429
PkrI GCNGC 8 cut(s) 292, 295, 418, 496, 841, 1380, 1389, 1554
PleI GAGTC 3 cut(s) 319, 669, 1155
PluTI GGCGCC 1 cut(s) 1034
PpsI GAGTC 3 cut(s) 319, 669, 1155
PpuMI RGGWCCY 1 cut(s) 799
Psp124BI GAGCTC 2 cut(s) 741, 832
Psp5II RGGWCCY 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 7 cut(s) 289, 596, 800, 801, 850, 1032, 1428
PspPI GGNCC 3 cut(s) 595, 799, 1109
PspPPI RGGWCCY 1 cut(s) 799
PsuI RGATCY 1 cut(s) 1213
RsaI GTAC 2 cut(s) 634, 850
RsaNI GTAC 2 cut(s) 633, 849
RseI CAYNNNNRTG 3 cut(s) 437, 605, 1025
SacI GAGCTC 2 cut(s) 741, 832
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 4 cut(s) 8, 336, 1118, 1143
SatI GCNGC 8 cut(s) 291, 294, 417, 495, 840, 1379, 1388, 1553
Sau3AI GATC 5 cut(s) 298, 793, 1213, 1363, 1392
Sau96I GGNCC 3 cut(s) 595, 799, 1109
SchI GAGTC 3 cut(s) 319, 669, 1155
ScrFI CCNGG 3 cut(s) 45, 426, 1315
SduI GDGCHC 2 cut(s) 741, 832
SfaNI GCATC 3 cut(s) 58, 1482, 1539
SfcI CTRYAG 1 cut(s) 147
SfoI GGCGCC 1 cut(s) 1032
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 2 cut(s) 595, 799
SmiMI CAYNNNNRTG 3 cut(s) 437, 605, 1025
SmlI CTYRAG 2 cut(s) 563, 1163
SmoI CTYRAG 2 cut(s) 563, 1163
Sse9I AATT 9 cut(s) 489, 719, 728, 753, 818, 854, 989, 1220, 1250
SsiI CCGC 6 cut(s) 125, 229, 291, 734, 1196, 1481
SspDI GGCGCC 1 cut(s) 1030
SspMI CTAG 1 cut(s) 1017
SstI GAGCTC 2 cut(s) 741, 832
StyD4I CCNGG 3 cut(s) 43, 424, 1313
StyI CCWWGG 2 cut(s) 606, 1259
TaaI ACNGT 2 cut(s) 240, 653
TaqI TCGA 5 cut(s) 79, 262, 281, 805, 1443
TaqII GACCGA 1 cut(s) 1461
TasI AATT 9 cut(s) 489, 719, 728, 753, 818, 854, 989, 1220, 1250
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 4 cut(s) 248, 779, 1438, 1532
Tru1I TTAA 4 cut(s) 8, 336, 1118, 1143
Tru9I TTAA 4 cut(s) 8, 336, 1118, 1143
TscAI CASTG 6 cut(s) 19, 171, 588, 708, 874, 1064
TseI GCWGC 7 cut(s) 293, 416, 494, 839, 1378, 1387, 1552
TspDTI ATGAA 9 cut(s) 188, 381, 494, 755, 765, 866, 1098, 1322, 1434
TspGWI ACGGA 2 cut(s) 1193, 1551
TspRI CASTG 6 cut(s) 19, 171, 588, 708, 874, 1064
VpaK11BI GGWCC 2 cut(s) 595, 799
XagI CCTNNNNNAGG 1 cut(s) 1263
XapI RAATTY 3 cut(s) 818, 989, 1220
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 1431
XspI CTAG 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.